Rorug07G0038800

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000238
Physical Location & Seq
Reverse (-)
2721412 .. 2722177
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0038800.1

Sequence Viewer

Length: 573 bp
ATGTGGGCTAGTCCTTTCTCTAAGAGTGTAGAGCTGGCGCTGAAAACCAAAGGCATTCCCTTTGAGTTTGTTGACGAAGATTTGAGGAACAGGAGTCCATCACTCCTCAAATACAATCCTGTTCACAAAAAGCTTCTGCCGGAGGATCCTTACAAAAGGGCTCAAGTTCGCTTCTGGGCTAGCTTTCTCCAGCAACATGTATTTGAGAATATGTCCCTGTTGTGCAAAACTGATGGAGAAGTACAAGAGAAGGCCATCAAAGAATTGTTTGAGAAATTAAAGACATTTGAAGAGGGAATCAAGGACTTATTCCCAGACGGTGCGCCTTCTATTGACTGCAGCAACAATCTGGGGCTTCTGGACATTGTATTGTGTTCACAGTTTGGCCCTCATAAAGTTCAGGAAGAAGTGCTTGGTATAACAACTATTGACCCAGAGAAAAACCCACTTTTGTTTACTTGGCTGAAATCTCTGAATGAGTTGCCTTTAGTGAAAGAGTTAACCCCTCCTTATGAAAAGCTAGTAGCAGTTCTTCACTTTTTCAGATATGCCCTCAAATCTAGTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

190

Amino Acids

21.74

Weight (kDa)

6.12

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 140, 153
AfaI GTAC 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 1 cut(s) 290
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AluBI AGCT 4 cut(s) 34, 133, 183, 520
AluI AGCT 4 cut(s) 34, 133, 183, 520
AlwI GGATC 2 cut(s) 140, 153
AoxI GGCC 2 cut(s) 252, 385
ApeKI GCWGC 2 cut(s) 339, 566
AspLEI GCGC 2 cut(s) 40, 325
AspS9I GGNCC 1 cut(s) 386
AsuNHI GCTAGC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 163
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BbvI GCAGC 2 cut(s) 351, 553
BccI CCATC 3 cut(s) 106, 227, 263
BfaI CTAG 4 cut(s) 9, 180, 521, 561
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 2 cut(s) 340, 567
BlsI GCNGC 2 cut(s) 341, 568
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 351, 553
BshFI GGCC 2 cut(s) 254, 387
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 2 cut(s) 254, 387
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 2 cut(s) 254, 387
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 341
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 2 cut(s) 140, 153
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 320, 381
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 36, 181
BstDEI CTNAG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 325
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 351, 553
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 254, 387
Cac8I GCNNGC 2 cut(s) 36, 181
CfoI GCGC 2 cut(s) 40, 325
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 197
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 198, 212, 393, 419, 513, 549
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 340, 567
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 340, 567
FspBI CTAG 4 cut(s) 9, 180, 521, 561
GlaI GCGC 2 cut(s) 39, 324
GluI GCNGC 2 cut(s) 340, 567
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 2 cut(s) 254, 387
HapII CCGG 1 cut(s) 140
HhaI GCGC 2 cut(s) 40, 325
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 2 cut(s) 38, 323
HinP1I GCGC 2 cut(s) 38, 323
HincII GTYRAC 2 cut(s) 73, 501
HindII GTYRAC 2 cut(s) 73, 501
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 94, 297
HpaI GTTAAC 1 cut(s) 501
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 5 cut(s) 73, 124, 377, 456, 501
Hpy188I TCNGA 2 cut(s) 474, 545
Hpy188III TCNNGA 2 cut(s) 359, 401
Hpy8I GTNNAC 5 cut(s) 73, 124, 377, 456, 501
HpyAV CCTTC 2 cut(s) 244, 336
HpyCH4III ACNGT 2 cut(s) 320, 381
HpyCH4V TGCA 2 cut(s) 225, 339
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 2 cut(s) 38, 323
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 351, 553
MaeI CTAG 4 cut(s) 9, 180, 521, 561
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 89, 302, 416, 524
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 263, 275
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 7 cut(s) 78, 116, 136, 286, 399, 516, 563
MseI TTAA 2 cut(s) 278, 500
MspI CCGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 54
NdeII GATC 1 cut(s) 145
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 147
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 341, 568
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PscI ACATGT 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 278, 500
SatI GCNGC 2 cut(s) 340, 567
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 386
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 163
SetI ASST 4 cut(s) 36, 135, 185, 522
SfcI CTRYAG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 2 cut(s) 263, 275
SspMI CTAG 4 cut(s) 9, 180, 521, 561
TaaI ACNGT 2 cut(s) 320, 381
TasI AATT 2 cut(s) 263, 275
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 2 cut(s) 278, 500
Tru9I TTAA 2 cut(s) 278, 500
TseI GCWGC 2 cut(s) 339, 566
TspDTI ATGAA 1 cut(s) 528
XceI RCATGY 1 cut(s) 200
XspI CTAG 4 cut(s) 9, 180, 521, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.