RLG00000003943

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000238
Physical Location & Seq
Forward (+)
54557773 .. 54560012
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003943

Sequence Viewer

Length: 966 bp
ATGGGGATATTATTTAGCAAGAAAGGACCATCTGGATTTTCTGCCTTTTCGACAGCAGAGGAGGTTACTCATGGGATTAATGGAACTGGTCTTACTGCCATAGTCACAGGAGCTTCAAGTGGTATTGGCGTAGAGACATCACGTGTCCTTGCTTTGCGTGGTGTCCATGTAGTAATGGCAGTAAGGAACGTTGATGCTGGGAATAATGTTAAAGAAGCAATACTTAAAGACATTCCCACTGCTAAAATTGATGTCATGGAATTAGACCTCAGCTCTTTAGCATCTGTAACAAAATTTGCAGCAGACTATAATTCCAAAGGCCTTCCATTGAACATCCTTATTAACAATGCAGGGGTTATGGCAACTCCATTCAAGCTTTCTCAAGAAAACATAGAACTTCAGTTTGCTACGAACCATTTAGGTCATTTTCTCCTCACAAATCTTCTCTTGGAGACAATGAAACACACATCGCGAGAGAGCAGCATAGAAGGAAGAGTTGTTAATGTAGCATCTTTGGGCCATAAATTTGGGTATCCGGAAGGAATTCGTTTTGATGAAATCAATGATGAATCAAGATACAACAAATATCGTGCATATAACCAATCCAAGCTTGCTAACATATTACATGCTAATGAGCTTGCAAGGCTTCTAAAGGAAGAAGGTGTGGACATAACTGCTAATTCTCTTCATCCTGGAGATATTTACACAAATCTTTTACGCAATGTTCATAGCTTTTTTCAATGTTTTTTTAAGACGCTGTCCCTGTTGGGTATATTTATGTCAAAAACCGTTGAGCAGGGAGCGGCTACAACATGCTTTGTGTCACTTCATCCACAAGTAAAGGGAGTAAGCGGCGAATACTTTTCAGGGTGCAACATCACCAAACCGAGCTCTCAGGCAAAAGATGAAGATGTGGCCAAGAAACTCTGGGAATTTAGCTTGAGTTTGACCGATCAAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

322

Amino Acids

35.02

Weight (kDa)

6.8

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 180 1e-24 short chain dehydrogenase
KR PF08659 32 - 150 2.1e-06 KR domain
adh_short_C2 PF13561 37 - 254 9.4e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 803
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 2 cut(s) 803, 852
AclI AACGTT 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 4 cut(s) 293, 524, 543, 932
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 143
AfaI GTAC 1 cut(s) 962
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 4 cut(s) 117, 331, 373, 740
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 8 cut(s) 113, 273, 376, 610, 637, 732, 891, 939
AluI AGCT 8 cut(s) 113, 273, 376, 610, 637, 732, 891, 939
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 2 cut(s) 128, 446
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 3 cut(s) 319, 517, 915
ApeKI GCWGC 2 cut(s) 299, 480
ApoI RAATTY 4 cut(s) 293, 524, 543, 932
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 543
AspS9I GGNCC 2 cut(s) 26, 517
AsuHPI GGTGA 1 cut(s) 871
AvaII GGWCC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 917
BanII GRGCYC 1 cut(s) 893
BbrPI CACGTG 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 893
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 311, 492
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 128, 446
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 4 cut(s) 300, 481, 804, 853
BlsI GCNGC 4 cut(s) 301, 482, 805, 854
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 26, 517
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 184, 290, 518
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 366, 961
BsaAI YACGTR 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 727
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 693
BseGI GGATG 3 cut(s) 333, 688, 829
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 2 cut(s) 283, 908
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 74, 422
BseXI GCAGC 2 cut(s) 311, 492
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 3 cut(s) 321, 519, 917
BsiHKAI GWGCWC 1 cut(s) 893
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 745
BsmAI GTCTC 2 cut(s) 128, 446
BsmFI GGGAC 1 cut(s) 745
BsnI GGCC 3 cut(s) 321, 519, 917
Bsp1286I GDGCHC 1 cut(s) 893
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 1 cut(s) 952
Bsp68I TCGCGA 1 cut(s) 472
BspACI CCGC 2 cut(s) 803, 852
BspANI GGCC 3 cut(s) 321, 519, 917
BspCNI CTCAG 2 cut(s) 282, 907
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 472
BsrBI CCGCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 952
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 790
Bst6I CTCTTC 2 cut(s) 487, 690
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 612, 639
BstDEI CTNAG 2 cut(s) 269, 894
BstF5I GGATG 3 cut(s) 333, 688, 829
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 1 cut(s) 955
BstMAI GTCTC 2 cut(s) 128, 446
BstMBI GATC 1 cut(s) 952
BstMWI GCNNNNNNNGC 1 cut(s) 643
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 2 cut(s) 629, 816
BstSCI CCNGG 1 cut(s) 691
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 311, 492
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 3 cut(s) 321, 519, 917
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 333, 688, 829
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BtuMI TCGCGA 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 612, 639
Cfr13I GGNCC 2 cut(s) 26, 517
CseI GACGC 1 cut(s) 763
Csp6I GTAC 1 cut(s) 961
CviAII CATG 5 cut(s) 71, 167, 256, 626, 813
CviQI GTAC 1 cut(s) 961
DdeI CTNAG 2 cut(s) 269, 894
DpnI GATC 1 cut(s) 954
DpnII GATC 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 2 cut(s) 487, 690
EarI CTCTTC 2 cut(s) 487, 690
Ecl136II GAGCTC 1 cut(s) 891
Eco147I AGGCCT 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 893
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 891
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 891
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 893
FaeI CATG 5 cut(s) 74, 170, 259, 629, 816
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 745
FatI CATG 5 cut(s) 70, 166, 255, 625, 812
Fnu4HI GCNGC 4 cut(s) 300, 481, 804, 853
FokI GGATG 3 cut(s) 320, 675, 816
FriOI GRGCYC 1 cut(s) 893
Fsp4HI GCNGC 4 cut(s) 300, 481, 804, 853
GluI GCNGC 4 cut(s) 300, 481, 804, 853
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 3 cut(s) 321, 519, 917
HapII CCGG 1 cut(s) 536
HgaI GACGC 1 cut(s) 763
Hin1II CATG 5 cut(s) 74, 170, 259, 629, 816
HindIII AAGCTT 2 cut(s) 374, 608
HinfI GANTC 1 cut(s) 569
HpaII CCGG 1 cut(s) 536
HphI GGTGA 1 cut(s) 871
Hpy166II GTNNAC 1 cut(s) 667
Hpy188III TCNNGA 5 cut(s) 33, 383, 471, 536, 573
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 4 cut(s) 332, 482, 533, 653
HpyCH4III ACNGT 1 cut(s) 790
HpyCH4IV ACGT 2 cut(s) 142, 189
HpyCH4V TGCA 5 cut(s) 299, 350, 593, 641, 873
HpyF10VI GCNNNNNNNGC 1 cut(s) 643
HpyF3I CTNAG 2 cut(s) 269, 894
HpySE526I ACGT 2 cut(s) 142, 189
Hsp92II CATG 5 cut(s) 74, 170, 259, 629, 816
Kpn2I TCCGGA 1 cut(s) 535
Kzo9I GATC 1 cut(s) 952
LmnI GCTCC 2 cut(s) 110, 800
Lsp1109I GCAGC 2 cut(s) 311, 492
LweI GCATC 3 cut(s) 184, 290, 518
MaeII ACGT 2 cut(s) 142, 189
MaeIII GTNAC 4 cut(s) 64, 103, 286, 822
MalI GATC 1 cut(s) 954
MbiI CCGCTC 1 cut(s) 803
MboI GATC 1 cut(s) 952
MboII GAAGA 5 cut(s) 434, 504, 668, 677, 920
MhlI GDGCHC 1 cut(s) 893
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 932
MluNI TGGCCA 1 cut(s) 917
MnlI CCTC 4 cut(s) 52, 55, 278, 443
Mox20I TGGCCA 1 cut(s) 917
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 543
MscI TGGCCA 1 cut(s) 917
MseI TTAA 6 cut(s) 78, 210, 225, 342, 501, 750
MslI CAYNNNNRTG 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 917
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 693
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 643
NdeII GATC 1 cut(s) 952
NlaIII CATG 5 cut(s) 74, 170, 259, 629, 816
NmuCI GTSAC 2 cut(s) 103, 822
NruI TCGCGA 1 cut(s) 472
NspI RCATGY 2 cut(s) 629, 816
PceI AGGCCT 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 569
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 4 cut(s) 301, 482, 805, 854
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 143
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 893
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 691
PspCI CACGTG 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 691
PspPI GGNCC 2 cut(s) 26, 517
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PsyI GACNNNGTC 1 cut(s) 757
RruI TCGCGA 1 cut(s) 472
RsaI GTAC 1 cut(s) 962
RsaNI GTAC 1 cut(s) 961
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 893
SaqAI TTAA 6 cut(s) 78, 210, 225, 342, 501, 750
SatI GCNGC 4 cut(s) 300, 481, 804, 853
Sau3AI GATC 1 cut(s) 952
Sau96I GGNCC 2 cut(s) 26, 517
ScaI AGTACT 1 cut(s) 962
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 3 cut(s) 184, 290, 518
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 381, 940
SmoI CTYRAG 2 cut(s) 381, 940
Sse9I AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 932
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 2 cut(s) 803, 852
SstI GAGCTC 1 cut(s) 893
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 1 cut(s) 790
TaiI ACGT 2 cut(s) 145, 192
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 965
TasI AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 932
TatI WGTACW 1 cut(s) 960
TauI GCSGC 2 cut(s) 806, 855
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 6 cut(s) 78, 210, 225, 342, 501, 750
Tru9I TTAA 6 cut(s) 78, 210, 225, 342, 501, 750
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 103, 822
TseI GCWGC 2 cut(s) 299, 480
Tsp45I GTSAC 2 cut(s) 103, 822
TspDTI ATGAA 7 cut(s) 473, 570, 582, 677, 716, 818, 921
TspRI CASTG 1 cut(s) 244
Tth111I GACNNNGTC 1 cut(s) 757
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 4 cut(s) 293, 524, 543, 932
XceI RCATGY 2 cut(s) 629, 816
XmnI GAANNNNTTC 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.