Rmu_sc0018035.1_g000001

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018035.1
OG0000238
Physical Location & Seq
Forward (+)
1 .. 367
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018035.1_g000001.1.cds

Sequence Viewer

Length: 236 bp
gagcctctagtggtattggcactgagacaacgcgtgttcttgtgttgcgtggtgctcatgtggtcatggcagtgaggaacaaggatgctggtataaatgtcaaagaagcaattctcaaagaaattccggatgctaaaattgatgtcacggagttagatctcagctcaatggcatctgtaagaaaatttgcagaagagtataattccaaaggccttccattgaatatccttatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

77

Amino Acids

8.3

Weight (kDa)

6.83

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 126
AcsI RAATTY 2 cut(s) 122, 184
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 1 cut(s) 222
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 1 cut(s) 210
ApoI RAATTY 2 cut(s) 122, 184
Asp700I GAANNNNTTC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 8
BglII AGATCT 1 cut(s) 156
BmsI GCATC 3 cut(s) 75, 120, 181
BsaWI WCCGGW 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 126
BseGI GGATG 2 cut(s) 90, 135
BseMII CTCAG 2 cut(s) 14, 174
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 15, 173
BspEI TCCGGA 1 cut(s) 126
BspFNI CGCG 1 cut(s) 33
BssMI GATC 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 23, 160
BstF5I GGATG 2 cut(s) 90, 135
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 156
BstUI CGCG 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 90, 135
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 20, 77
CviAII CATG 2 cut(s) 58, 66
CviJI RGCY 3 cut(s) 4, 164, 212
CviKI_1 RGCY 3 cut(s) 4, 164, 212
DdeI CTNAG 2 cut(s) 23, 160
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco147I AGGCCT 1 cut(s) 212
FaeI CATG 2 cut(s) 61, 69
FaiI YATR 5 cut(s) 59, 67, 94, 200, 232
FatI CATG 2 cut(s) 57, 65
FokI GGATG 2 cut(s) 97, 142
FspBI CTAG 1 cut(s) 8
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 127
Hin1II CATG 2 cut(s) 61, 69
HpaII CCGG 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 23, 160
Hsp92II CATG 2 cut(s) 61, 69
Kpn2I TCCGGA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 2 cut(s) 74, 140
LweI GCATC 3 cut(s) 75, 120, 181
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 5 cut(s) 110, 122, 137, 184, 201
MluI ACGCGT 1 cut(s) 31
MnlI CCTC 2 cut(s) 15, 68
MroI TCCGGA 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 70
MspI CCGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 33
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 61, 69
NmuCI GTSAC 1 cut(s) 144
PceI AGGCCT 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 70
Sau3AI GATC 1 cut(s) 156
SduI GDGCHC 1 cut(s) 57
SetI ASST 1 cut(s) 166
SfaNI GCATC 3 cut(s) 75, 120, 181
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 5 cut(s) 110, 122, 137, 184, 201
SseBI AGGCCT 1 cut(s) 212
SspMI CTAG 1 cut(s) 8
StuI AGGCCT 1 cut(s) 212
TasI AATT 5 cut(s) 110, 122, 137, 184, 201
TscAI CASTG 2 cut(s) 27, 77
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 2 cut(s) 27, 77
XapI RAATTY 2 cut(s) 122, 184
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.