RchiOBHm_Chr7g0197361

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000238
Physical Location & Seq
Reverse (-)
15319447 .. 15325691
6245 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17656

Sequence Viewer

Length: 954 bp
ATGGGGTTACTTAGCAGGACAGGGCCATCTGGGTTCTCAGCCTCTTCCACAGCAGAGGAAGTTACTCAAGGGATTGATGGAACTGGTCTTACCGCCATCGTTACAGGAACCACAAGCGGTCTTGGTTTAGAGACATCGCGTGTTCTTGCATTGCGTGGTGTCCATGTAGTTATGGCAGTAAGGAACACAAATGCAGGGGAAAATGTCAAAGAAGCAATCCTTAAAGAAATCCCCAATGCTAGAGTTGATGTTATGGAGTTAGATCTCAGCTCATTGGCATCTGTAAGAAAGTTTGGAGAAGAGTATAATTCCTTAGGCCTTCCACTGAACATCCTTATTAATAATGCAGGGGTTGTAACACCATTCAAGCTTTCTCAAGACAATATAGAGCTCCATTTTGCAACTAATCACTTAGGGCACTTTCTTCTCACAAATCTTTTGTTGGAGACAATGAAACGCACATCGCGAGAAAGCAACAAAGAGGGAAGAATTGTAAATTTATCGTCAATGGGCCATCAATATGTGTACCGTGAAGGAATTCGTTTTGATAAAATTAATGAGGAATCAAGCTATTACACATATTTGGCCTATGGACAATCCAAGCTTGCTAGTGTATTACATGCTAATGAGCTTACAAGGCATCTGAAGGCAGAAGGAGTAGAGATCATTGCTAATTCTCTTCATCCAGGATTAATCCAGACCAATATCGTGCGCTTTGATGGCATTTTGCATTATATTGTGAAGGTGTTGGGTGTATTTATCATTCCGTTCATTAAAACTGTTCAGCAGGGTGCAGCAACCACATGCTTTGTGGCACTCCATCCACAAGTGAAGGGAGTAAGCGGCGAATATTTTACCGACTGTAACATTGCCAAACCGAGCGATCAGGCCAACGATGCAGATTTGGCTACCAAACTTTGGGATTTTAGCTTGAGCTTGACTAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

34.56

Weight (kDa)

6.37

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 174 1.2e-23 short chain dehydrogenase
KR PF08659 31 - 123 1.2e-06 KR domain
adh_short_C2 PF13561 38 - 238 2.3e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 918
AccII CGCG 2 cut(s) 139, 466
AciI CCGC 3 cut(s) 93, 117, 843
AcsI RAATTY 2 cut(s) 496, 537
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 918
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 8 cut(s) 270, 370, 391, 570, 604, 631, 930, 936
AluI AGCT 8 cut(s) 270, 370, 391, 570, 604, 631, 930, 936
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 125, 440
AoxI GGCC 5 cut(s) 23, 316, 511, 585, 888
ApeKI GCWGC 1 cut(s) 794
ApoI RAATTY 2 cut(s) 496, 537
AseI ATTAAT 3 cut(s) 339, 555, 692
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 2 cut(s) 23, 511
AxyI CCTNAGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 806
BccI CCATC 6 cut(s) 34, 71, 104, 522, 713, 828
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 125, 440
BfaI CTAG 2 cut(s) 240, 609
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 795, 844
BlsI GCNGC 2 cut(s) 796, 845
Bme1390I CCNGG 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 23, 511
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 3 cut(s) 287, 649, 886
BpuEI CTTGAG 4 cut(s) 51, 360, 932, 952
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse1I ACTGG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 313
Bse3DI GCAATG 3 cut(s) 149, 666, 867
BseBI CCWGG 1 cut(s) 687
BseGI GGATG 3 cut(s) 330, 682, 820
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMI GCAATG 3 cut(s) 149, 666, 867
BseMII CTCAG 2 cut(s) 51, 280
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 1 cut(s) 806
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 2 cut(s) 139, 466
BshFI GGCC 5 cut(s) 25, 318, 513, 587, 890
BsiHKAI GWGCWC 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 918
BsmAI GTCTC 2 cut(s) 125, 440
BsnI GGCC 5 cut(s) 25, 318, 513, 587, 890
Bsp1286I GDGCHC 2 cut(s) 393, 420
Bsp143I GATC 3 cut(s) 262, 663, 883
Bsp68I TCGCGA 1 cut(s) 466
BspACI CCGC 3 cut(s) 93, 117, 843
BspANI GGCC 5 cut(s) 25, 318, 513, 587, 890
BspCNI CTCAG 2 cut(s) 50, 279
BspFNI CGCG 2 cut(s) 139, 466
BspLI GGNNCC 1 cut(s) 109
BsrDI GCAATG 3 cut(s) 149, 666, 867
BsrI ACTGG 1 cut(s) 88
BssMI GATC 3 cut(s) 262, 663, 883
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 3 cut(s) 530, 781, 863
Bst6I CTCTTC 3 cut(s) 49, 294, 684
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 5 cut(s) 11, 37, 266, 313, 412
BstF5I GGATG 3 cut(s) 330, 682, 820
BstFNI CGCG 2 cut(s) 139, 466
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 3 cut(s) 265, 666, 886
BstMAI GTCTC 2 cut(s) 125, 440
BstMBI GATC 3 cut(s) 262, 663, 883
BstMWI GCNNNNNNNGC 4 cut(s) 637, 720, 896, 905
BstNI CCWGG 1 cut(s) 687
BstNSI RCATGY 2 cut(s) 623, 807
BstSCI CCNGG 1 cut(s) 685
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 2 cut(s) 139, 466
BstV1I GCAGC 1 cut(s) 806
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
Bsu36I CCTNAGG 1 cut(s) 313
BsuRI GGCC 5 cut(s) 25, 318, 513, 587, 890
BtgZI GCGATG 2 cut(s) 120, 447
BtsCI GGATG 3 cut(s) 330, 682, 820
BtsIMutI CAGTG 1 cut(s) 323
BtuMI TCGCGA 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 2 cut(s) 23, 511
Csp6I GTAC 1 cut(s) 526
CspCI CAANNNNNGTGG 2 cut(s) 790, 825
CviAII CATG 3 cut(s) 164, 620, 804
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 5 cut(s) 11, 37, 266, 313, 412
DpnI GATC 3 cut(s) 264, 665, 885
DpnII GATC 3 cut(s) 262, 663, 883
Eam1104I CTCTTC 3 cut(s) 49, 294, 684
EarI CTCTTC 3 cut(s) 49, 294, 684
Ecl136II GAGCTC 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 665
Eco81I CCTNAGG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 393
FaeI CATG 3 cut(s) 167, 623, 807
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 3 cut(s) 163, 619, 803
Fnu4HI GCNGC 2 cut(s) 795, 844
FokI GGATG 3 cut(s) 317, 669, 807
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 2 cut(s) 795, 844
FspBI CTAG 2 cut(s) 240, 609
GlaI GCGC 1 cut(s) 713
GluI GCNGC 2 cut(s) 795, 844
HaeIII GGCC 5 cut(s) 25, 318, 513, 587, 890
HhaI GCGC 1 cut(s) 714
Hin1II CATG 3 cut(s) 167, 623, 807
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HindIII AAGCTT 2 cut(s) 368, 602
HinfI GANTC 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 1 cut(s) 645
Hpy188III TCNNGA 3 cut(s) 377, 465, 697
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 6 cut(s) 329, 527, 640, 647, 736, 826
HpyCH4III ACNGT 3 cut(s) 530, 781, 863
HpyCH4V TGCA 7 cut(s) 149, 194, 347, 401, 730, 794, 899
HpyF10VI GCNNNNNNNGC 4 cut(s) 637, 720, 896, 905
HpyF3I CTNAG 5 cut(s) 11, 37, 266, 313, 412
Hsp92II CATG 3 cut(s) 167, 623, 807
HspAI GCGC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 262, 663, 883
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 1 cut(s) 806
LweI GCATC 3 cut(s) 287, 649, 886
MaeI CTAG 2 cut(s) 240, 609
MaeIII GTNAC 5 cut(s) 6, 61, 100, 355, 863
MalI GATC 3 cut(s) 264, 665, 885
MboI GATC 3 cut(s) 262, 663, 883
MboII GAAGA 5 cut(s) 36, 311, 416, 498, 671
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 393, 420
MluCI AATT 6 cut(s) 307, 489, 496, 537, 552, 673
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 4 cut(s) 49, 52, 475, 553
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 5 cut(s) 222, 339, 555, 692, 774
MslI CAYNNNNRTG 2 cut(s) 519, 624
MspR9I CCNGG 1 cut(s) 687
MvaI CCWGG 1 cut(s) 687
MvnI CGCG 2 cut(s) 139, 466
MwoI GCNNNNNNNGC 4 cut(s) 637, 720, 896, 905
NdeII GATC 3 cut(s) 262, 663, 883
NlaIII CATG 3 cut(s) 167, 623, 807
NlaIV GGNNCC 1 cut(s) 109
NruI TCGCGA 1 cut(s) 466
NspI RCATGY 2 cut(s) 623, 807
PceI AGGCCT 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 563
PflMI CCANNNNNTGG 1 cut(s) 918
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 2 cut(s) 796, 845
PshBI ATTAAT 3 cut(s) 339, 555, 692
Psp124BI GAGCTC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 685
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 23, 511
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PsuI RGATCY 1 cut(s) 262
RruI TCGCGA 1 cut(s) 466
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 2 cut(s) 519, 624
SacI GAGCTC 1 cut(s) 393
SaqAI TTAA 5 cut(s) 222, 339, 555, 692, 774
SatI GCNGC 2 cut(s) 795, 844
Sau3AI GATC 3 cut(s) 262, 663, 883
Sau96I GGNCC 2 cut(s) 23, 511
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 2 cut(s) 393, 420
SetI ASST 9 cut(s) 272, 372, 393, 572, 606, 633, 747, 932, 938
SfaNI GCATC 3 cut(s) 287, 649, 886
SmiMI CAYNNNNRTG 2 cut(s) 519, 624
SmlI CTYRAG 4 cut(s) 66, 375, 931, 947
SmoI CTYRAG 4 cut(s) 66, 375, 931, 947
Sse9I AATT 6 cut(s) 307, 489, 496, 537, 552, 673
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 3 cut(s) 93, 117, 843
SspI AATATT 1 cut(s) 851
SspMI CTAG 2 cut(s) 240, 609
SstI GAGCTC 1 cut(s) 393
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 3 cut(s) 530, 781, 863
TasI AATT 6 cut(s) 307, 489, 496, 537, 552, 673
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 5 cut(s) 222, 339, 555, 692, 774
Tru9I TTAA 5 cut(s) 222, 339, 555, 692, 774
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 794
TspDTI ATGAA 3 cut(s) 467, 671, 760
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 918
VspI ATTAAT 3 cut(s) 339, 555, 692
XapI RAATTY 2 cut(s) 496, 537
XceI RCATGY 2 cut(s) 623, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 240, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.