Rorug07G0039300

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000238
Physical Location & Seq
Forward (+)
2752582 .. 2754513
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0039300.1

Sequence Viewer

Length: 1932 bp
ATGAACACCTGTTCACACCTTTGCTCTTCTTTGTTAAACAAATGCAAGACCCTCAAAACCGTGAAGCAAGTCCACGCCTTTGTGCACAAGACCGGGCTCGACACCAACCCCTTGGTCTTCGGCAAGCTCCTCCTCCACTGCGCCGTCACAATCTCCGACGCACTCGACTACGCTCGCCGCCTCTTTCTTCATTTTCCATACCCAGATGCGTTCATGTACAACACCCTTATCCGCGGACTCGCCGACTCCGATAACCCACACAATGCACTTCTCCTGTTCCATGACATGCGTCGCAAATATGTAAGACCCATCGATAGCTTCTCTTTCGCTTTCACACTCAAGGCGGCGGCGAATTGCGGGTCGCTGAGGGAAGGGATACAACTGCATTGTCAGGGTTTGTTGCATGGGCTACATACTCATGTTTTCGTTGGTACAACTCTGGTTAGTATGTATGGTGAATGTGGGTGTATTGGTCTTGCACGGAAGGTGTTCGATGAAATGCCTGAACCAAATGTGGTCGCGTGGAACGCGTTGCTTACGGCGTGTTTTAAGTGTGGGGATGTGGAGGGTGCGGAGGAAGTGTTTGGATCAATGCCTTGGAAAGATTTGACCTCCTGGAATATTGTGGTTGCGGGATACGTGAAGGCGGATGAGCTTGAGCTGGCGAAGGAGGCGTTTTGGAGGATGCCGGTGAAGGATGATGTGTCTTGGAGTACTATGATTGTTGGGTTTGCGCAGAGCGGTTGTTTTGATGAGGCATTTGGGTTTTTCGGGGACCTACAGCGGAAGGGTGTTAGGCCAAATGAGGCTAGCTTGAGTGGGGTGCTGTCTGCGTGTGCGCAGGCTGGAGCGGTTGAGTTTGGTAGAATTTTGCATGGTTTGGTGGAGAAGGCTGGATTCCTTTCGATGATTTCAGTCAATAATGCACTCCTGGATATGTACTCTAAGTCTGGAAATGTGGAGATGGCTCGGTTGGTCTTTGAAAGAATGCCGGAGAGAAAGAGTGTTGTTTCTTGGACTTCGATGATAGCAGCACTTGCAATGCATGGTTATGGCAAAGAAGCAATACAAGGTTTCTGCAGGATGGAAGCGTCTGGAGTTAGGCCTGATGGGATCGCATTCATTTCTGTTTTGTATGCTTGTAGTCATGCTGGGTTGGTTAACGAAGGATGTGAATATTTCTCTAAGATGAGAGATTTGTATGGTATAGAACCAGCTATTGACCATTATGGTTGTATGGTAGACCTGTATGGTCGAGCTGGAAAACTGCAGAAAGCCTATGATTTTGTATGTCAGTTGCCAATATCTCCTAATGCTATTATTTGGCGAACTCTTCTTGGGGCTTGTAGCATTCATGGTAATGTAGAGTTGGCAGAACAAGTGAAGGAAATGCTTTCCAAACTTGACCCTGACAATGCAGGCGACCATGTTCTCTTGTCAAATGTGTATGCTGCTGCAGGGAAGTGGAAAGACGTCGCTGCTGTAAGAAGATCAATGGCTGACCAGAAGATTAAGAAAACTCCAGGTTGGAGCGTGATTGAAGTTGACAAGGTCATGTATAGCTTTGTGGCGGGCGATAAATCAAACAAGATCACAGAAGAGGCTTATGAGAAGTTAAGGGAGATAATGCTGAAACTTCGTGTTGGTGGAGGTTATTTGCCAGAGGTTGGGAGTGTTCTGCATGACTTAGAAGCGGAGGACAAAGAAGATTCAGTGTTCATGCACAGTGAGAAACTTGCAGTAGCTTTTGGGTTGGCAAGATTGCCTGAGGGAAGGATGATAAGGATAGTGAAGAATTTGCGGGTTTGTAGAGACTGTCATACAGTGATGAAGCTGATTTCTAAGGTCTATAGATCGGAGATAGTGGTGAGGGATAGAAGCCGCTTTCACTCCTTCAAAGATGGCTGTTGTTCATGCAACGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

643

Amino Acids

71.48

Weight (kDa)

7.25

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 68 - 114 5.7e-06 PPR repeat family
PPR_2 PF13041 170 - 199 5.3e-06 PPR repeat family
PPR_2 PF13041 233 - 280 2.9e-08 PPR repeat family
PPR PF01535 235 - 265 2.4e-06 PPR repeat
PPR_2 PF13041 335 - 382 2.7e-06 PPR repeat family
E_motif PF20431 452 - 514 2.4e-18 E motif
DYW_deaminase PF14432 551 - 643 3.3e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1476
Acc16I TGCGCA 2 cut(s) 735, 840
AccB7I CCANNNNNTGG 1 cut(s) 1667
AccBSI CCGCTC 2 cut(s) 741, 851
AccI GTMKAC 1 cut(s) 1242
AccII CGCG 3 cut(s) 234, 521, 530
AclWI GGATC 2 cut(s) 595, 1121
AcsI RAATTY 2 cut(s) 867, 1795
AcyI GRCGYC 1 cut(s) 1473
AfaI GTAC 4 cut(s) 218, 433, 715, 941
AfiI CCNNNNNNNGG 1 cut(s) 1667
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 3 cut(s) 983, 1541, 1897
AjnI CCWGG 3 cut(s) 614, 930, 1522
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 1806
Alw44I GTGCAC 1 cut(s) 83
AlwI GGATC 2 cut(s) 595, 1121
AoxI GGCC 2 cut(s) 797, 1103
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 1031, 1451, 1454, 1478
ApoI RAATTY 2 cut(s) 867, 1795
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 3 cut(s) 143, 736, 841
AspS9I GGNCC 1 cut(s) 775
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 467, 703, 1879
AsuNHI GCTAGC 1 cut(s) 809
AvaII GGWCC 1 cut(s) 775
AxyI CCTNAGG 1 cut(s) 1767
BaeGI GKGCMC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 4 cut(s) 1043, 1438, 1441, 1465
BccI CCATC 5 cut(s) 317, 958, 1078, 1103, 1895
BceAI ACGGC 2 cut(s) 128, 555
BciT130I CCWGG 3 cut(s) 616, 932, 1524
BciVI GTATCC 2 cut(s) 369, 629
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 1806
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 5 cut(s) 779, 1078, 1268, 1455, 1849
BfuI GTATCC 2 cut(s) 369, 629
BisI GCNGC 8 cut(s) 178, 345, 348, 1032, 1452, 1455, 1479, 1882
BlsI GCNGC 8 cut(s) 179, 346, 349, 1033, 1453, 1456, 1480, 1883
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 4 cut(s) 94, 616, 932, 1524
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 775
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 4 cut(s) 94, 616, 932, 1524
BmsI GCATC 2 cut(s) 196, 675
BmtI GCTAGC 1 cut(s) 813
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 3 cut(s) 867, 1116, 1506
Bpu10I CCTNAGC 1 cut(s) 365
BpuEI CTTGAG 3 cut(s) 323, 677, 835
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 1473
BsaJI CCNNGG 3 cut(s) 111, 232, 596
BsaXI ACNNNNNCTCC 2 cut(s) 566, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 1667
Bse118I RCCGGY 1 cut(s) 688
Bse1I ACTGG 1 cut(s) 1931
Bse21I CCTNAGG 1 cut(s) 1767
Bse3DI GCAATG 1 cut(s) 1047
BseBI CCWGG 3 cut(s) 616, 932, 1524
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 111, 232, 596
BseGI GGATG 7 cut(s) 565, 655, 690, 703, 1089, 1175, 1782
BseLI CCNNNNNNNGG 1 cut(s) 1667
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 2 cut(s) 356, 1758
BseNI ACTGG 1 cut(s) 1931
BseRI GAGGAG 2 cut(s) 119, 122
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 4 cut(s) 1043, 1438, 1441, 1465
BseYI CCCAGC 1 cut(s) 1151
Bsh1236I CGCG 3 cut(s) 234, 521, 530
BshFI GGCC 2 cut(s) 799, 1105
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 3 cut(s) 93, 689, 992
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 1 cut(s) 1667
BsmAI GTCTC 1 cut(s) 1806
BsmFI GGGAC 1 cut(s) 788
BsmI GAATGC 3 cut(s) 993, 1118, 1350
BsnI GGCC 2 cut(s) 799, 1105
Bsp1286I GDGCHC 2 cut(s) 87, 99
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
BspANI GGCC 2 cut(s) 799, 1105
BspCNI CTCAG 2 cut(s) 357, 1759
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 3 cut(s) 234, 521, 530
BspLI GGNNCC 1 cut(s) 776
BspMAI CTGCAG 3 cut(s) 1082, 1272, 1459
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 2 cut(s) 595, 1121
BspQI GCTCTTC 1 cut(s) 31
BsrBI CCGCTC 2 cut(s) 741, 851
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 1 cut(s) 688
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 1931
BssAI RCCGGY 1 cut(s) 688
BssECI CCNNGG 3 cut(s) 111, 232, 596
BssMI GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
BssNI GRCGYC 1 cut(s) 1473
BssT1I CCWWGG 2 cut(s) 111, 596
Bst2UI CCWGG 3 cut(s) 616, 932, 1524
Bst4CI ACNGT 4 cut(s) 61, 1727, 1817, 1825
Bst6I CTCTTC 3 cut(s) 31, 1338, 1593
BstACI GRCGYC 1 cut(s) 1473
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 7 cut(s) 125, 175, 663, 811, 843, 1420, 1573
BstDEI CTNAG 6 cut(s) 365, 945, 1185, 1687, 1767, 1842
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 7 cut(s) 565, 655, 690, 703, 1089, 1175, 1782
BstFNI CGCG 3 cut(s) 234, 521, 530
BstHHI GCGC 3 cut(s) 143, 736, 841
BstKTI GATC 5 cut(s) 590, 1116, 1493, 1593, 1856
BstMAI GTCTC 1 cut(s) 1806
BstMBI GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
BstMWI GCNNNNNNNGC 3 cut(s) 527, 671, 1037
BstNI CCWGG 3 cut(s) 616, 932, 1524
BstNSI RCATGY 1 cut(s) 289
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 4 cut(s) 92, 614, 930, 1522
BstSFI CTRYAG 5 cut(s) 779, 1078, 1268, 1455, 1849
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 3 cut(s) 234, 521, 530
BstV1I GCAGC 4 cut(s) 1043, 1438, 1441, 1465
BstV2I GAAGAC 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 1767
BsuI GTATCC 2 cut(s) 369, 629
BsuRI GGCC 2 cut(s) 799, 1105
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 7 cut(s) 565, 655, 690, 703, 1089, 1175, 1782
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 4 cut(s) 136, 1719, 1732, 1830
Cac8I GCNNGC 7 cut(s) 125, 175, 663, 811, 843, 1420, 1573
CfoI GCGC 3 cut(s) 143, 736, 841
Cfr10I RCCGGY 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 775
Cfr42I CCGCGG 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 3 cut(s) 167, 278, 1080
Csp6I GTAC 4 cut(s) 217, 432, 714, 940
CviQI GTAC 4 cut(s) 217, 432, 714, 940
DdeI CTNAG 6 cut(s) 365, 945, 1185, 1687, 1767, 1842
DpnI GATC 5 cut(s) 589, 1115, 1492, 1592, 1855
DpnII GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
Eam1104I CTCTTC 3 cut(s) 31, 1338, 1593
EarI CTCTTC 3 cut(s) 31, 1338, 1593
EciI GGCGGA 1 cut(s) 662
Eco130I CCWWGG 2 cut(s) 111, 596
Eco147I AGGCCT 1 cut(s) 1105
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 775
Eco81I CCTNAGG 1 cut(s) 1767
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 3 cut(s) 614, 930, 1522
EcoT14I CCWWGG 2 cut(s) 111, 596
EcoT22I ATGCAT 1 cut(s) 1047
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 111, 596
FaqI GGGAC 1 cut(s) 788
FauI CCCGC 4 cut(s) 350, 625, 1564, 1794
FblI GTMKAC 1 cut(s) 1242
Fnu4HI GCNGC 8 cut(s) 178, 345, 348, 1032, 1452, 1455, 1479, 1882
FokI GGATG 7 cut(s) 572, 662, 697, 710, 1096, 1182, 1789
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 8 cut(s) 178, 345, 348, 1032, 1452, 1455, 1479, 1882
FspBI CTAG 1 cut(s) 810
FspI TGCGCA 2 cut(s) 735, 840
GlaI GCGC 3 cut(s) 142, 735, 840
GluI GCNGC 8 cut(s) 178, 345, 348, 1032, 1452, 1455, 1479, 1882
GsaI CCCAGC 1 cut(s) 1155
GsuI CTGGAG 3 cut(s) 867, 1116, 1506
HaeIII GGCC 2 cut(s) 799, 1105
HapII CCGG 3 cut(s) 93, 689, 992
HgaI GACGC 3 cut(s) 167, 278, 1080
HhaI GCGC 3 cut(s) 143, 736, 841
Hin1I GRCGYC 1 cut(s) 1473
Hin6I GCGC 3 cut(s) 141, 734, 839
HinP1I GCGC 3 cut(s) 141, 734, 839
HincII GTYRAC 2 cut(s) 1162, 1546
HindII GTYRAC 2 cut(s) 1162, 1546
HinfI GANTC 4 cut(s) 237, 245, 897, 1709
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 3 cut(s) 93, 689, 992
HphI GGTGA 3 cut(s) 467, 703, 1879
Hpy166II GTNNAC 6 cut(s) 14, 73, 85, 1162, 1243, 1546
Hpy188I TCNGA 3 cut(s) 157, 250, 1858
Hpy188III TCNNGA 2 cut(s) 951, 1095
Hpy8I GTNNAC 6 cut(s) 14, 73, 85, 1162, 1243, 1546
Hpy99I CGWCG 3 cut(s) 161, 294, 1478
HpyCH4III ACNGT 4 cut(s) 61, 1727, 1817, 1825
HpyCH4IV ACGT 2 cut(s) 639, 1473
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 671, 1037
HpyF3I CTNAG 6 cut(s) 365, 945, 1185, 1687, 1767, 1842
HpySE526I ACGT 2 cut(s) 639, 1473
Hsp92I GRCGYC 1 cut(s) 1473
HspAI GCGC 3 cut(s) 141, 734, 839
KspAI GTTAAC 1 cut(s) 1162
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 3 cut(s) 132, 848, 1530
Lsp1109I GCAGC 4 cut(s) 1043, 1438, 1441, 1465
LweI GCATC 2 cut(s) 196, 675
MaeI CTAG 1 cut(s) 810
MaeII ACGT 2 cut(s) 639, 1473
MaeIII GTNAC 1 cut(s) 145
MalI GATC 5 cut(s) 589, 1115, 1492, 1592, 1855
MbiI CCGCTC 2 cut(s) 741, 851
MboI GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
MboII GAAGA 9 cut(s) 18, 109, 179, 1325, 1500, 1519, 1610, 1718, 1804
MhlI GDGCHC 2 cut(s) 87, 99
MluCI AATT 3 cut(s) 352, 867, 1795
MluI ACGCGT 1 cut(s) 528
MlyI GAGTC 2 cut(s) 231, 239
MmeI TCCRAC 2 cut(s) 180, 1508
Mph1103I ATGCAT 1 cut(s) 1047
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 5 cut(s) 35, 549, 1161, 1512, 1616
MslI CAYNNNNRTG 3 cut(s) 417, 1050, 1359
MspA1I CMGCKG 2 cut(s) 234, 784
MspI CCGG 3 cut(s) 93, 689, 992
MspR9I CCNGG 4 cut(s) 94, 616, 932, 1524
Mva1269I GAATGC 3 cut(s) 993, 1118, 1350
MvaI CCWGG 3 cut(s) 616, 932, 1524
MvnI CGCG 3 cut(s) 234, 521, 530
MwoI GCNNNNNNNGC 3 cut(s) 527, 671, 1037
NciI CCSGG 1 cut(s) 94
NdeII GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
NheI GCTAGC 1 cut(s) 809
NlaIV GGNNCC 1 cut(s) 776
NmuCI GTSAC 1 cut(s) 145
NsbI TGCGCA 2 cut(s) 735, 840
NsiI ATGCAT 1 cut(s) 1047
NspI RCATGY 1 cut(s) 289
PceI AGGCCT 1 cut(s) 1105
PciSI GCTCTTC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 3 cut(s) 993, 1118, 1350
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 2 cut(s) 897, 1709
PflFI GACNNNGTC 1 cut(s) 1550
PflMI CCANNNNNTGG 1 cut(s) 1667
PfoI TCCNGGA 2 cut(s) 614, 930
PkrI GCNGC 8 cut(s) 179, 346, 349, 1033, 1453, 1456, 1480, 1883
PleI GAGTC 2 cut(s) 231, 239
PpsI GAGTC 2 cut(s) 231, 239
Ppu21I YACGTR 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 775
PshAI GACNNNNGTC 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 3 cut(s) 614, 930, 1522
PspFI CCCAGC 1 cut(s) 1151
PspGI CCWGG 3 cut(s) 614, 930, 1522
PspN4I GGNNCC 1 cut(s) 776
PspPI GGNCC 1 cut(s) 775
PspPPI RGGWCCY 1 cut(s) 775
PstI CTGCAG 3 cut(s) 1082, 1272, 1459
PsyI GACNNNGTC 1 cut(s) 1550
RsaI GTAC 4 cut(s) 218, 433, 715, 941
RsaNI GTAC 4 cut(s) 217, 432, 714, 940
RseI CAYNNNNRTG 3 cut(s) 417, 1050, 1359
SacII CCGCGG 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 5 cut(s) 35, 549, 1161, 1512, 1616
SatI GCNGC 8 cut(s) 178, 345, 348, 1032, 1452, 1455, 1479, 1882
Sau3AI GATC 5 cut(s) 587, 1113, 1490, 1590, 1853
Sau96I GGNCC 1 cut(s) 775
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 2 cut(s) 231, 239
ScrFI CCNGG 4 cut(s) 94, 616, 932, 1524
SduI GDGCHC 2 cut(s) 87, 99
SfaNI GCATC 2 cut(s) 196, 675
SfcI CTRYAG 5 cut(s) 779, 1078, 1268, 1455, 1849
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 3 cut(s) 417, 1050, 1359
SmlI CTYRAG 3 cut(s) 338, 656, 814
SmoI CTYRAG 3 cut(s) 338, 656, 814
Sse9I AATT 3 cut(s) 352, 867, 1795
SseBI AGGCCT 1 cut(s) 1105
SspI AATATT 2 cut(s) 622, 1178
SspMI CTAG 1 cut(s) 810
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 4 cut(s) 92, 614, 930, 1522
StyI CCWWGG 2 cut(s) 111, 596
TaaI ACNGT 4 cut(s) 61, 1727, 1817, 1825
TaiI ACGT 2 cut(s) 642, 1476
TaqI TCGA 7 cut(s) 99, 165, 312, 492, 905, 1022, 1255
TasI AATT 3 cut(s) 352, 867, 1795
TatI WGTACW 3 cut(s) 216, 713, 939
TauI GCSGC 4 cut(s) 180, 347, 350, 1884
TfiI GAWTC 2 cut(s) 897, 1709
Tru1I TTAA 5 cut(s) 35, 549, 1161, 1512, 1616
Tru9I TTAA 5 cut(s) 35, 549, 1161, 1512, 1616
TscAI CASTG 4 cut(s) 143, 1719, 1732, 1830
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 4 cut(s) 1031, 1451, 1454, 1478
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 9 cut(s) 17, 179, 202, 510, 1111, 1343, 1708, 1844, 1902
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 4 cut(s) 143, 1719, 1732, 1830
Tth111I GACNNNGTC 1 cut(s) 1550
Van91I CCANNNNNTGG 1 cut(s) 1667
VneI GTGCAC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 2 cut(s) 867, 1795
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 1242
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 1 cut(s) 810
ZraI GACGTC 1 cut(s) 1474
ZrmI AGTACT 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.