Rroxscaffold_3G00258990

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000238
Physical Location & Seq
Reverse (-)
53384732 .. 53386903
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258990.1

Sequence Viewer

Length: 603 bp
ATGGGGATTTTTAGCAAGAAAGCAGCATCTGGATTCTCTGCCTCTTCCACAGCAGAACAAGTTACTCAAGGAATTGATGGAACTGGTCTTACTGCCATTGTTACAGGAGCCACAAATGGTATTGGCCTAGAGACAGCGCGTGTTCTTGCATTGCGTGGTGTTCATGTAGTAATGGCAGTAAGGAACATGGATGCCGGTACCAATGTCAAAGAAGCAATCCTCAAAGAAATCCCGGATGCAAAAATTGATGTTATGGAGTTAGATCTCAGCTTATTGGCTTCTGTCAGAAAATTTGGAGCAGAGTTTGATTCCAGAGGCCTTCCCTTGAATATCCTTATATACAACAAGTATGTTGCATATGGAGAATCGAAGCTGGCTAATATACTACATGCTAATGAGCTTACAACGCTCTTCAAGGTATTGACCTTAAGCTTCAAGGGAGCGGCAACCACATGCTTTGTGGCACTGAATCCACAAGTGAAGGGAGTAAGCGGAGAATACTTTGTGGACTGTAACATTGCCAAACCGAGCTCTCAGGCCAAAGATGCAGATTTGGCTAGGAGACTCTGGATTTTTAGCTCGAATTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

200

Amino Acids

21.32

Weight (kDa)

8.85

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 157 1.2e-11 short chain dehydrogenase
adh_short_C2 PF13561 36 - 152 9.6e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 443
AccII CGCG 1 cut(s) 139
AciI CCGC 2 cut(s) 443, 492
AcsI RAATTY 2 cut(s) 290, 583
AfaI GTAC 1 cut(s) 199
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 3 cut(s) 328, 415, 436
AluBI AGCT 6 cut(s) 270, 373, 400, 432, 531, 579
AluI AGCT 6 cut(s) 270, 373, 400, 432, 531, 579
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 2 cut(s) 125, 556
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 3 cut(s) 124, 316, 537
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 290, 583
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 125, 556
BfaI CTAG 2 cut(s) 128, 558
BfrI CTTAAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 24, 444
BlsI GCNGC 2 cut(s) 25, 445
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 109, 199
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 4 cut(s) 35, 181, 226, 535
BpuEI CTTGAG 2 cut(s) 51, 581
BpuMI CCSGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 2 cut(s) 149, 516
BseGI GGATG 2 cut(s) 196, 241
BseMI GCAATG 2 cut(s) 149, 516
BseMII CTCAG 2 cut(s) 280, 548
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 126, 318, 539
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 533
BsiSI CCGG 2 cut(s) 195, 233
BsmAI GTCTC 2 cut(s) 125, 556
BsnI GGCC 3 cut(s) 126, 318, 539
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 2 cut(s) 443, 492
BspANI GGCC 3 cut(s) 126, 318, 539
BspCNI CTCAG 2 cut(s) 279, 547
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 109, 199
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 149, 516
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 194
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 2 cut(s) 49, 416
BstAFI CTTAAG 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 266, 534
BstF5I GGATG 2 cut(s) 196, 241
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 125, 556
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 406, 545, 554
BstNSI RCATGY 2 cut(s) 392, 456
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 3 cut(s) 126, 318, 539
BtsCI GGATG 2 cut(s) 196, 241
BtsIMutI CAGTG 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 4 cut(s) 164, 187, 389, 453
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 2 cut(s) 266, 534
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 49, 416
EarI CTCTTC 2 cut(s) 49, 416
Ecl136II GAGCTC 1 cut(s) 531
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 533
FaeI CATG 4 cut(s) 167, 190, 392, 456
FatI CATG 4 cut(s) 163, 186, 388, 452
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 24, 444
FokI GGATG 2 cut(s) 203, 248
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 2 cut(s) 24, 444
FspBI CTAG 2 cut(s) 128, 558
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 24, 444
HaeIII GGCC 3 cut(s) 126, 318, 539
HapII CCGG 2 cut(s) 195, 233
HhaI GCGC 1 cut(s) 139
Hin1II CATG 4 cut(s) 167, 190, 392, 456
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 5 cut(s) 33, 308, 365, 469, 564
HpaII CCGG 2 cut(s) 195, 233
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 3 cut(s) 30, 312, 568
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 2 cut(s) 329, 475
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4V TGCA 4 cut(s) 149, 239, 356, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 545, 554
HpyF3I CTNAG 2 cut(s) 266, 534
Hsp92II CATG 4 cut(s) 167, 190, 392, 456
HspAI GCGC 1 cut(s) 137
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 3 cut(s) 107, 296, 440
LpnPI CCDG 9 cut(s) 15, 69, 90, 208, 246, 325, 359, 521, 553
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 4 cut(s) 35, 181, 226, 535
MaeI CTAG 2 cut(s) 128, 558
MaeIII GTNAC 3 cut(s) 61, 100, 512
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 443
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 36, 403
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 4 cut(s) 72, 243, 290, 583
MlyI GAGTC 1 cut(s) 558
MnlI CCTC 3 cut(s) 52, 230, 308
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 393
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 2 cut(s) 195, 233
MspR9I CCNGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 406, 545, 554
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 358
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 167, 190, 392, 456
NlaIV GGNNCC 2 cut(s) 109, 199
NspI RCATGY 2 cut(s) 392, 456
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 416
PfeI GAWTC 4 cut(s) 33, 308, 365, 469
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 2 cut(s) 25, 445
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 109, 199
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 2 cut(s) 24, 444
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 533
SetI ASST 8 cut(s) 272, 375, 402, 420, 428, 434, 533, 581
SfaNI GCATC 4 cut(s) 35, 181, 226, 535
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 3 cut(s) 66, 427, 596
SmoI CTYRAG 3 cut(s) 66, 427, 596
Sse9I AATT 4 cut(s) 72, 243, 290, 583
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 2 cut(s) 443, 492
SspMI CTAG 2 cut(s) 128, 558
SstI GAGCTC 1 cut(s) 533
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 512
TaqI TCGA 2 cut(s) 368, 581
TasI AATT 4 cut(s) 72, 243, 290, 583
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 4 cut(s) 33, 308, 365, 469
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 471
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 1 cut(s) 471
Vha464I CTTAAG 1 cut(s) 427
XapI RAATTY 2 cut(s) 290, 583
XceI RCATGY 2 cut(s) 392, 456
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XspI CTAG 2 cut(s) 128, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.