Rmu_sc0012104.1_g000004

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012104.1
OG0000238
Physical Location & Seq
Forward (+)
19462 .. 19767
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012104.1_g000004.1.cds

Sequence Viewer

Length: 306 bp
atgttgcttgaacttaagttttttttttttgtgggaatattttctttggctcctgatgttgtattgacaggagcatctagtggcattggcactgaaactacgcgtgttcttgcactacctggtgcccatgtgatcatgggagtgaggaatatggctgcgggtaaagatgtgaaagatgtgatagttaatgaaatccccactgccaaaattgatgccatggagttggatcttagttcattgtcatctgtgaggaaatttgcatcagattacaaatccactggtcgtcctctaaacatcttaatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

101

Amino Acids

10.82

Weight (kDa)

6.55

Isoelectric Point (pI)

21.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 254
AflII CTTAAG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 1 cut(s) 118
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 132
BfaI CTAG 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 51, 124
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 83, 202, 269
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 132, 226
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 158
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 51, 124
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 132, 226
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 2 cut(s) 135, 229
BstMBI GATC 2 cut(s) 132, 226
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 90, 198, 276
CsiI ACCWGGT 1 cut(s) 118
CviAII CATG 3 cut(s) 128, 136, 217
CviJI RGCY 2 cut(s) 50, 155
CviKI_1 RGCY 2 cut(s) 50, 155
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 134, 228
DpnII GATC 2 cut(s) 132, 226
Eco130I CCWWGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 131, 139, 220
FaiI YATR 4 cut(s) 129, 137, 152, 218
FatI CATG 3 cut(s) 127, 135, 216
FauI CCCGC 1 cut(s) 151
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 131, 139, 220
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 113, 260
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 3 cut(s) 131, 139, 220
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 132, 226
LmnI GCTCC 2 cut(s) 55, 71
LpnPI CCDG 5 cut(s) 54, 66, 105, 132, 264
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 3 cut(s) 83, 202, 269
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 1 cut(s) 78
MalI GATC 2 cut(s) 134, 228
MboI GATC 2 cut(s) 132, 226
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 207, 254
MluI ACGCGT 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 3 cut(s) 138, 243, 297
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 3 cut(s) 15, 186, 299
MslI CAYNNNNRTG 2 cut(s) 140, 299
MspCI CTTAAG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 216
NdeII GATC 2 cut(s) 132, 226
NlaIII CATG 3 cut(s) 131, 139, 220
NlaIV GGNNCC 2 cut(s) 51, 124
PdmI GAANNNNTTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 51, 124
PsuI RGATCY 1 cut(s) 226
RseI CAYNNNNRTG 2 cut(s) 140, 299
SaqAI TTAA 3 cut(s) 15, 186, 299
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 132, 226
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 127
SetI ASST 1 cut(s) 121
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 3 cut(s) 83, 202, 269
SmiMI CAYNNNNRTG 2 cut(s) 140, 299
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 207, 254
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 216
TasI AATT 2 cut(s) 207, 254
Tru1I TTAA 3 cut(s) 15, 186, 299
Tru9I TTAA 3 cut(s) 15, 186, 299
TscAI CASTG 3 cut(s) 97, 205, 283
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 204, 225
TspRI CASTG 3 cut(s) 97, 205, 283
Vha464I CTTAAG 1 cut(s) 14
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.