Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000238

Physical Location & Seq

Genomic Coordinates Forward (+)

40004872 .. 40008767

Gene Structure 3896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1173300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTGGATATTTGGATGGAAAGGGCCGTCTGGATTTTCAGCCCGTTCTACTGCTGAGGAAGTTACTCAGGGAATTGATGGAACCGGTCTCACTGCAATCGTTACAGGAGCATCGAGTGGTCTTGGTTTGGAGACAACACGAGTTCTAGCCTTGCGTGGTGTTCATGTCGTCATGGCAGTAAGGAATACTGATGCTGGTAGGAATGTTAAAGAGGAAATACTTAAGGAAATCCCCACGGCCAAAATCGATGTCATGGAGCTTGATCTCAGCTCAATGGCTTCAGTTAGGAAGTTTGCATCGGAATATAAATCATCTGGTCGACCATTGCATATTCTGATTAATAATGCAGGGATTATGGCAACTCCGTTCATGCTTTCAAAAGACAACATTGAAATGCAGTTTGCAACCAACCATTTAGGCCATTTTCTTTTGACAAACCTTCTGTTAGAAACCATGAAAAAGACAACAGAGGAAAGCAACAAAGAAGGAAGGATCGTGAATTTATCATCAGAGGCTCACCGATTTGCATATACGGAGGGGATTCGTTTTGACAAGATTAATGATGAATCAGGATACACCAGTATTTACGCTTATGGACAATCAAAACTTGCGAATATATTGCATGCTAATGAGCTCACAAGGTGCTTGAAGGCAGAAGGGATTAATATAACTGCTAATTCCCTTCACCCCGGATCAATTGTTACCAATCTTCTACGCCACCACAGTTACATTAATGCCATTGCCGGCTTCTTCGGTAGACTTATGCTTAAAAATGTTCAGCAGGGGGCAGCAACTGAATGCTATGTAGCGTTGCATCCGCAAGTTAAGGGTATCAGCGGTGAATACTTTATGGACAGCAACAAAGCCGACCCGACCCCTCAAGCCAAAGATGCTGAATTGGCAAAGAAGCTATGGGATTTCAGTGTGAGCCTGACGGATCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

316

Amino Acids

34.51

Weight (kDa)

7.16

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	31 - 177	1.6e-26	short chain dehydrogenase
KR	PF08659	31 - 132	1.3e-08	KR domain
adh_short_C2	PF13561	36 - 243	5.2e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca	FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica	MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica	Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis	pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis	RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata	RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora	Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa	Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha	Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana	Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	319, 757
AciI	CCGC	2 cut(s)	818, 837
AclWI	GGATC	4 cut(s)	500, 700, 932, 945
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	642
AflII	CTTAAG	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	378, 392, 649
AluBI	AGCT	4 cut(s)	259, 270, 634, 910
AluI	AGCT	4 cut(s)	259, 270, 634, 910
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	2 cut(s)	92, 125
AlwI	GGATC	4 cut(s)	500, 700, 932, 945
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	3 cut(s)	23, 237, 418
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	499
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AseI	ATTAAT	4 cut(s)	339, 558, 663, 732
AsiGI	ACCGGT	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	3 cut(s)	509, 677, 851
BaeI	ACNNNNGTAYC	2 cut(s)	565, 598
BamHI	GGATCC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	636
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	2 cut(s)	9, 71
BceAI	ACGGC	2 cut(s)	10, 252
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciVI	GTATCC	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	92, 125
BfaI	CTAG	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	82, 939
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	5 cut(s)	119, 181, 305, 823, 880
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	690
Bsa29I	ATCGAT	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	234, 688
BsaWI	WCCGGW	1 cut(s)	83
Bse118I	RCCGGY	2 cut(s)	83, 743
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	323, 738
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	234, 688
BseGI	GGATG	2 cut(s)	20, 814
BseMI	GCAATG	2 cut(s)	323, 738
BseMII	CTCAG	3 cut(s)	45, 80, 280
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	800
BshFI	GGCC	3 cut(s)	25, 239, 420
BshTI	ACCGGT	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	3 cut(s)	84, 690, 744
BsmAI	GTCTC	2 cut(s)	92, 125
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	25, 239, 420
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	4 cut(s)	262, 492, 692, 937
BspACI	CCGC	2 cut(s)	818, 837
BspANI	GGCC	3 cut(s)	25, 239, 420
BspCNI	CTCAG	3 cut(s)	46, 79, 279
BspDI	ATCGAT	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	82, 939
BspPI	GGATC	4 cut(s)	500, 700, 932, 945
BspTI	CTTAAG	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	323, 738
BsrFI	RCCGGY	2 cut(s)	83, 743
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	2 cut(s)	83, 743
BssECI	CCNNGG	2 cut(s)	234, 688
BssMI	GATC	4 cut(s)	262, 492, 692, 937
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	725
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	624, 745
BstDEI	CTNAG	3 cut(s)	54, 66, 266
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	20, 814
BstKTI	GATC	4 cut(s)	265, 495, 695, 940
BstMAI	GTCTC	2 cut(s)	92, 125
BstMBI	GATC	4 cut(s)	262, 492, 692, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	890, 899
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	688
BstV1I	GCAGC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
Bsu15I	ATCGAT	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	3 cut(s)	25, 239, 420
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	20, 814
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 928
Cac8I	GCNNGC	2 cut(s)	624, 745
CaiI	CAGNNNCTG	1 cut(s)	794
Cfr10I	RCCGGY	2 cut(s)	83, 743
Cfr13I	GGNCC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	246
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	6 cut(s)	164, 172, 253, 370, 454, 623
DdeI	CTNAG	3 cut(s)	54, 66, 266
DpnI	GATC	4 cut(s)	264, 494, 694, 939
DpnII	GATC	4 cut(s)	262, 492, 692, 937
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	6 cut(s)	167, 175, 256, 373, 457, 626
FatI	CATG	6 cut(s)	163, 171, 252, 369, 453, 622
FblI	GTMKAC	2 cut(s)	319, 757
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	2 cut(s)	27, 801
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	789
HaeIII	GGCC	3 cut(s)	25, 239, 420
HapII	CCGG	3 cut(s)	84, 690, 744
Hin1II	CATG	6 cut(s)	167, 175, 256, 373, 457, 626
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	541, 566
HpaII	CCGG	3 cut(s)	84, 690, 744
HphI	GGTGA	3 cut(s)	509, 677, 851
Hpy166II	GTNNAC	2 cut(s)	320, 758
Hpy188I	TCNGA	3 cut(s)	301, 336, 511
Hpy188III	TCNNGA	3 cut(s)	30, 496, 570
Hpy8I	GTNNAC	2 cut(s)	320, 758
HpyAV	CCTTC	6 cut(s)	449, 479, 483, 643, 650, 692
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4V	TGCA	9 cut(s)	95, 296, 328, 347, 397, 404, 527, 622, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	890, 899
HpyF3I	CTNAG	3 cut(s)	54, 66, 266
Hsp92II	CATG	6 cut(s)	167, 175, 256, 373, 457, 626
KroI	GCCGGC	1 cut(s)	743
KroNI	GCCGGC	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	262, 492, 692, 937
LmnI	GCTCC	2 cut(s)	107, 256
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	5 cut(s)	119, 181, 305, 823, 880
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	4 cut(s)	61, 100, 700, 725
MalI	GATC	4 cut(s)	264, 494, 694, 939
MboI	GATC	4 cut(s)	262, 492, 692, 937
MboII	GAAGA	2 cut(s)	701, 742
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	5 cut(s)	72, 499, 676, 696, 896
MnlI	CCTC	6 cut(s)	49, 205, 463, 505, 529, 888
MroNI	GCCGGC	1 cut(s)	743
MseI	TTAA	8 cut(s)	207, 222, 339, 558, 663, 732, 768, 825
MslI	CAYNNNNRTG	2 cut(s)	392, 627
MspA1I	CMGCKG	1 cut(s)	837
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	3 cut(s)	84, 690, 744
MspR9I	CCNGG	1 cut(s)	690
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	803
MwoI	GCNNNNNNNGC	2 cut(s)	890, 899
NaeI	GCCGGC	1 cut(s)	745
NciI	CCSGG	1 cut(s)	690
NdeII	GATC	4 cut(s)	262, 492, 692, 937
NgoMIV	GCCGGC	1 cut(s)	743
NlaIII	CATG	6 cut(s)	167, 175, 256, 373, 457, 626
NlaIV	GGNNCC	2 cut(s)	82, 939
NspI	RCATGY	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	803
PdiI	GCCGGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	541, 566
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	790
PshBI	ATTAAT	4 cut(s)	339, 558, 663, 732
Psp124BI	GAGCTC	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	82, 939
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	937
RseI	CAYNNNNRTG	2 cut(s)	392, 627
SacI	GAGCTC	1 cut(s)	636
SalI	GTCGAC	1 cut(s)	318
SaqAI	TTAA	8 cut(s)	207, 222, 339, 558, 663, 732, 768, 825
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	4 cut(s)	262, 492, 692, 937
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	690
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	6 cut(s)	261, 272, 441, 636, 644, 912
SfaNI	GCATC	5 cut(s)	119, 181, 305, 823, 880
SmiMI	CAYNNNNRTG	2 cut(s)	392, 627
SmlI	CTYRAG	2 cut(s)	221, 879
SmoI	CTYRAG	2 cut(s)	221, 879
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	5 cut(s)	72, 499, 676, 696, 896
SsiI	CCGC	2 cut(s)	818, 837
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	725
TaqI	TCGA	3 cut(s)	113, 246, 319
TasI	AATT	5 cut(s)	72, 499, 676, 696, 896
TfiI	GAWTC	2 cut(s)	541, 566
Tru1I	TTAA	8 cut(s)	207, 222, 339, 558, 663, 732, 768, 825
Tru9I	TTAA	8 cut(s)	207, 222, 339, 558, 663, 732, 768, 825
TscAI	CASTG	2 cut(s)	97, 928
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	152, 358, 470, 579
TspGWI	ACGGA	2 cut(s)	354, 548
TspRI	CASTG	2 cut(s)	97, 928
Vha464I	CTTAAG	1 cut(s)	221
VspI	ATTAAT	4 cut(s)	339, 558, 663, 732
XapI	RAATTY	1 cut(s)	499
XceI	RCATGY	1 cut(s)	626
XmiI	GTMKAC	2 cut(s)	319, 757
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.