FvH4_5g02643

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000238
Physical Location & Seq
Forward (+)
1586612 .. 1588724
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02643.t1

Sequence Viewer

Length: 951 bp
ATGAGGATATTCGGCAAGAAAGGAGCTTCTGAATTCTCTGCCTCTTCCACAGCAGAACAAGTTACACGAGGAGTTGATGGAACTGGCCTTACTGCCATTGTTACAGGAGCCTCGAGTGGTATTGGTGTAGAGACCGTACGTGTTCTTGCATTGCGTGGTGTTCATGTAGTAATGGCAGTGAGGAACATGGATGCCGGTGCCAACGTCAAAGAAGCAATCCTTAAAAAAGTGTCTAATGCTAAGATTGATGTCATGGAGTTAGATCTCAGCTCAATGGCATCTGTAAGAAAGTTTGCAGCAGAATACAATTCCAAATGCCTTCCATTGAACATCCTTATTAACAATGCAGGGGTTATGGTAGGTAAATTCAAGCTATCTCAAGACAACATAGAACTCGATTTTGCAACTAACCATTTAGGTCATTTTCTTCTCACAAATCTTTTGTTAGAGAACATGAAACAAACATCAAGAAACAGCAACATAGAGGGGAGAATTGTTAATGTATCATCTCTTGGCCACAGATATACATACCGTGAGGGAATTCGTTTTGATTTAATTAACGACAAATCAAGATTCAACAACTATGTTGCCTATGCAGAATCCAAGCTCGCCAACATATTGCATGCTAATGAGCTTACAAGGCGCCTCAAGGAAGAAAGGGTTGAGATAACTGCTAATTCTCTTCATCCGGGAACAATTCACACCAATATTGTGCGCAATGATATCCGTTTAAAGTGTCTTCTTAAGTTGGTTAGGCTAATATTTTTGAGCAAAACTATTCAGCAGGGAGCGGCGACCACATGCTTTTTGGCACTGAATCCACAAGTTAAGGGAGTAAGTGGGGAATACTATGTGGACTGTAACATTGCCAAACCGCGCTCCAAGGCAAATGATCCAGATTTGGCCAAGAGACTCTGGGATTTTAGCTTGAGTTTGACCGATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

34.88

Weight (kDa)

9.56

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 176 5.2e-26 short chain dehydrogenase
KR PF08659 31 - 120 2.3e-06 KR domain
adh_short_C2 PF13561 36 - 283 3.6e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 716
AccB1I GGYRCC 2 cut(s) 197, 642
AccBSI CCGCTC 1 cut(s) 791
AccII CGCG 1 cut(s) 877
AciI CCGC 2 cut(s) 791, 875
AclWI GGATC 1 cut(s) 887
AcoI YGGCCR 2 cut(s) 514, 903
AcsI RAATTY 3 cut(s) 32, 365, 540
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 1 cut(s) 138
AflII CTTAAG 1 cut(s) 743
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 3 cut(s) 328, 370, 577
AluBI AGCT 6 cut(s) 26, 270, 373, 607, 634, 927
AluI AGCT 6 cut(s) 26, 270, 373, 607, 634, 927
Alw26I GTCTC 2 cut(s) 125, 904
AlwI GGATC 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 3 cut(s) 85, 514, 903
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 3 cut(s) 32, 365, 540
AspLEI GCGC 3 cut(s) 645, 717, 879
AsuC2I CCSGG 1 cut(s) 690
AvaI CYCGRG 1 cut(s) 112
BalI TGGCCA 2 cut(s) 516, 905
BanI GGYRCC 2 cut(s) 197, 642
BauI CACGAG 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 125, 904
BfoI RGCGCY 1 cut(s) 646
BfrI CTTAAG 1 cut(s) 743
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 297, 792
BlsI GCNGC 2 cut(s) 298, 793
Bme1390I CCNGG 1 cut(s) 690
BmeT110I CYCGRG 1 cut(s) 112
BmiI GGNNCC 3 cut(s) 109, 199, 644
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 2 cut(s) 181, 287
BpiI GAAGAC 1 cut(s) 731
BpuEI CTTGAG 4 cut(s) 363, 632, 929, 949
BpuMI CCSGG 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 882
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 3 cut(s) 149, 724, 864
BseDI CCNNGG 1 cut(s) 882
BseGI GGATG 3 cut(s) 196, 330, 685
BseMI GCAATG 3 cut(s) 149, 724, 864
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 877
BshFI GGCC 3 cut(s) 87, 516, 905
BshNI GGYRCC 2 cut(s) 197, 642
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 195, 689
BsiWI CGTACG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 125, 904
BsnI GGCC 3 cut(s) 87, 516, 905
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 112
Bsp143I GATC 3 cut(s) 262, 892, 940
BspACI CCGC 2 cut(s) 791, 875
BspANI GGCC 3 cut(s) 87, 516, 905
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 877
BspLI GGNNCC 3 cut(s) 109, 199, 644
BspPI GGATC 1 cut(s) 887
BspT107I GGYRCC 2 cut(s) 197, 642
BspTI CTTAAG 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 791
BsrDI GCAATG 3 cut(s) 149, 724, 864
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 882
BssMI GATC 3 cut(s) 262, 892, 940
BssNI GRCGYC 1 cut(s) 643
BssSI CACGAG 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 882
Bst2BI CACGAG 1 cut(s) 66
Bst4CI ACNGT 3 cut(s) 136, 533, 860
Bst6I CTCTTC 2 cut(s) 49, 687
BstACI GRCGYC 1 cut(s) 643
BstAFI CTTAAG 1 cut(s) 743
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 609, 624
BstDEI CTNAG 2 cut(s) 240, 266
BstF5I GGATG 3 cut(s) 196, 330, 685
BstFNI CGCG 1 cut(s) 877
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 3 cut(s) 645, 717, 879
BstKTI GATC 3 cut(s) 265, 895, 943
BstMAI GTCTC 2 cut(s) 125, 904
BstMBI GATC 3 cut(s) 262, 892, 940
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNSI RCATGY 2 cut(s) 626, 804
BstSCI CCNGG 1 cut(s) 688
BstUI CGCG 1 cut(s) 877
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 3 cut(s) 87, 516, 905
BtsCI GGATG 3 cut(s) 196, 330, 685
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 812
Cac8I GCNNGC 2 cut(s) 609, 624
CfoI GCGC 3 cut(s) 645, 717, 879
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 1 cut(s) 137
CviAII CATG 6 cut(s) 164, 187, 253, 454, 623, 801
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 240, 266
DinI GGCGCC 1 cut(s) 644
DpnI GATC 3 cut(s) 264, 894, 942
DpnII GATC 3 cut(s) 262, 892, 940
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 514, 903
Eam1104I CTCTTC 2 cut(s) 49, 687
EarI CTCTTC 2 cut(s) 49, 687
Eco130I CCWWGG 1 cut(s) 882
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 724
Eco88I CYCGRG 1 cut(s) 112
EcoRI GAATTC 2 cut(s) 32, 540
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 882
EgeI GGCGCC 1 cut(s) 644
EheI GGCGCC 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 6 cut(s) 167, 190, 256, 457, 626, 804
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 6 cut(s) 163, 186, 252, 453, 622, 800
Fnu4HI GCNGC 2 cut(s) 297, 792
FokI GGATG 3 cut(s) 203, 317, 672
Fsp4HI GCNGC 2 cut(s) 297, 792
FspI TGCGCA 1 cut(s) 716
GlaI GCGC 3 cut(s) 644, 716, 878
GluI GCNGC 2 cut(s) 297, 792
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 3 cut(s) 87, 516, 905
HapII CCGG 2 cut(s) 195, 689
HhaI GCGC 3 cut(s) 645, 717, 879
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 6 cut(s) 167, 190, 256, 457, 626, 804
Hin6I GCGC 3 cut(s) 643, 715, 877
HinP1I GCGC 3 cut(s) 643, 715, 877
HinfI GANTC 4 cut(s) 573, 599, 817, 912
HpaII CCGG 2 cut(s) 195, 689
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 4 cut(s) 380, 468, 570, 896
Hpy8I GTNNAC 1 cut(s) 856
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 3 cut(s) 136, 533, 860
HpyCH4IV ACGT 2 cut(s) 139, 204
HpyCH4V TGCA 6 cut(s) 149, 296, 347, 404, 596, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 2 cut(s) 240, 266
HpySE526I ACGT 2 cut(s) 139, 204
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 6 cut(s) 167, 190, 256, 457, 626, 804
HspAI GCGC 3 cut(s) 643, 715, 877
KasI GGCGCC 1 cut(s) 642
Kzo9I GATC 3 cut(s) 262, 892, 940
LmnI GCTCC 4 cut(s) 23, 107, 788, 884
LpnPI CCDG 8 cut(s) 69, 90, 208, 333, 702, 770, 901, 909
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 181, 287
MaeII ACGT 2 cut(s) 139, 204
MaeIII GTNAC 3 cut(s) 61, 100, 860
MalI GATC 3 cut(s) 264, 894, 942
MbiI CCGCTC 1 cut(s) 791
MboI GATC 3 cut(s) 262, 892, 940
MboII GAAGA 5 cut(s) 36, 419, 665, 674, 731
MflI RGATCY 1 cut(s) 262
MlsI TGGCCA 2 cut(s) 516, 905
MluCI AATT 8 cut(s) 32, 307, 365, 492, 540, 555, 676, 696
MluNI TGGCCA 2 cut(s) 516, 905
Mly113I GGCGCC 1 cut(s) 643
MlyI GAGTC 1 cut(s) 906
MnlI CCTC 7 cut(s) 52, 62, 121, 174, 478, 529, 656
Mox20I TGGCCA 2 cut(s) 516, 905
MscI TGGCCA 2 cut(s) 516, 905
MseI TTAA 8 cut(s) 222, 339, 498, 554, 558, 731, 744, 828
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 2 cut(s) 516, 905
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 2 cut(s) 195, 689
MspR9I CCNGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 877
MwoI GCNNNNNNNGC 1 cut(s) 640
NarI GGCGCC 1 cut(s) 643
NciI CCSGG 1 cut(s) 690
NdeII GATC 3 cut(s) 262, 892, 940
NlaIII CATG 6 cut(s) 167, 190, 256, 457, 626, 804
NlaIV GGNNCC 3 cut(s) 109, 199, 644
NsbI TGCGCA 1 cut(s) 716
NspI RCATGY 2 cut(s) 626, 804
PacI TTAATTAA 1 cut(s) 558
PaeI GCATGC 1 cut(s) 626
PaeR7I CTCGAG 1 cut(s) 112
PfeI GAWTC 3 cut(s) 573, 599, 817
Pfl23II CGTACG 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 2 cut(s) 298, 793
PleI GAGTC 1 cut(s) 906
PluTI GGCGCC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 906
Ppu21I YACGTR 1 cut(s) 140
PspLI CGTACG 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 109, 199, 644
PspXI VCTCGAGB 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 8 cut(s) 222, 339, 498, 554, 558, 731, 744, 828
SatI GCNGC 2 cut(s) 297, 792
Sau3AI GATC 3 cut(s) 262, 892, 940
SchI GAGTC 1 cut(s) 906
ScrFI CCNGG 1 cut(s) 690
SfaNI GCATC 2 cut(s) 181, 287
SfoI GGCGCC 1 cut(s) 644
Sfr274I CTCGAG 1 cut(s) 112
SlaI CTCGAG 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 6 cut(s) 112, 378, 647, 743, 928, 944
SmoI CTYRAG 6 cut(s) 112, 378, 647, 743, 928, 944
SphI GCATGC 1 cut(s) 626
Sse9I AATT 8 cut(s) 32, 307, 365, 492, 540, 555, 676, 696
SsiI CCGC 2 cut(s) 791, 875
SspDI GGCGCC 1 cut(s) 642
SspI AATATT 2 cut(s) 709, 762
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 3 cut(s) 136, 533, 860
TaiI ACGT 2 cut(s) 142, 207
TaqI TCGA 2 cut(s) 113, 396
TasI AATT 8 cut(s) 32, 307, 365, 492, 540, 555, 676, 696
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 3 cut(s) 573, 599, 817
Tru1I TTAA 8 cut(s) 222, 339, 498, 554, 558, 731, 744, 828
Tru9I TTAA 8 cut(s) 222, 339, 498, 554, 558, 731, 744, 828
TscAI CASTG 2 cut(s) 183, 819
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 152, 470, 674
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 2 cut(s) 183, 819
Vha464I CTTAAG 1 cut(s) 743
XapI RAATTY 3 cut(s) 32, 365, 540
XceI RCATGY 2 cut(s) 626, 804
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XhoI CTCGAG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.