Rmu_sc0004824.1_g000009

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004824.1
Physical Location & Seq
Forward (+)
32207 .. 34651
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004824.1_g000009.1.cds

Sequence Viewer

Length: 789 bp
atgggagtgaggaatatggctgcgggtaaagatgtgaaagatgtgatagttaatgaaatccccactgccaaaattgatgccatggagttggatcttagttcattgtcatctgtcaggaaatttgcatcagatttcaaatccgctggtcgtcctctaaacatcttaattaacaatgcaggaattatggcgaccccattcttgctttccaaagataagattgaacttcagtttgccacaaaccatataggtcattttctgttgacaaatcttttgttggatactatgaaaaagactgcacgttcaagtagcaaagaagggagaattgtaaatgtatcctctgaagctcaccggtttgcatatcgtgaaggaatccgttttgatagaatcaacgacccatcagggtacagcagttggcctgcatatggtcaatcaaagctagctaacattttgcatgccaaagaactttcaaaacaaataaaggaagatggggcaaatataactgcaaatgcacttcaccctggtgcaattctcaccaatcttttccgtcataacattgttatcaatggtaatcatgtcattaatgggcttgttaatgtgctcggtagagttgtgcttaaaaatgttcagcagggagcagcaacaacttgctatgtggcactgcatccgcaagctaaaggggtgagcggtgaatatttttcagacagtaatatttccaagccaagacctcaagctgaagatgagttgttggcaaagaagctctgggatttcagcaaggatttgactaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

262

Amino Acids

28.75

Weight (kDa)

9.5

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 684
AciI CCGC 4 cut(s) 23, 141, 665, 684
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 3 cut(s) 209, 360, 753
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 422
AgeI ACCGGT 1 cut(s) 348
AgsI TTSAA 4 cut(s) 136, 221, 303, 468
AjnI CCWGG 1 cut(s) 517
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 6 cut(s) 344, 436, 440, 671, 731, 757
AluI AGCT 6 cut(s) 344, 436, 440, 671, 731, 757
Alw21I GWGCWC 1 cut(s) 600
AlwI GGATC 1 cut(s) 99
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 20, 635
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AseI ATTAAT 1 cut(s) 579
AsiGI ACCGGT 1 cut(s) 348
AsuHPI GGTGA 5 cut(s) 338, 506, 523, 691, 698
AsuNHI GCTAGC 1 cut(s) 436
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 7, 647
BccI CCATC 2 cut(s) 403, 479
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 2 cut(s) 271, 343
BfaI CTAG 1 cut(s) 437
BfuI GTATCC 2 cut(s) 271, 343
BisI GCNGC 2 cut(s) 21, 636
BlsI GCNGC 2 cut(s) 22, 637
Bme1390I CCNGG 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 3 cut(s) 67, 134, 670
BmtI GCTAGC 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 81, 517
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse118I RCCGGY 1 cut(s) 348
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 81, 517
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 1 cut(s) 422
BseXI GCAGC 2 cut(s) 7, 647
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 415
BshTI ACCGGT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 600
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 422
BsnI GGCC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 4 cut(s) 23, 141, 665, 684
BspANI GGCC 1 cut(s) 415
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 81, 517
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 704
BstC8I GCNNGC 4 cut(s) 417, 438, 453, 669
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 517
BstV1I GCAGC 2 cut(s) 7, 647
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 1 cut(s) 91
BsuI GTATCC 2 cut(s) 271, 343
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 661
BtsI GCAGTG 2 cut(s) 63, 656
BtsIMutI CAGTG 2 cut(s) 63, 656
Cac8I GCNNGC 4 cut(s) 417, 438, 453, 669
Cfr10I RCCGGY 1 cut(s) 348
Csp6I GTAC 1 cut(s) 403
CspAI ACCGGT 1 cut(s) 348
CviAII CATG 3 cut(s) 82, 452, 572
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 81
Eco57I CTGAAG 3 cut(s) 209, 360, 753
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 3 cut(s) 85, 455, 575
FatI CATG 3 cut(s) 81, 451, 571
FauI CCCGC 1 cut(s) 16
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 21, 636
FokI GGATG 1 cut(s) 648
Fsp4HI GCNGC 2 cut(s) 21, 636
FspBI CTAG 1 cut(s) 437
GluI GCNGC 2 cut(s) 21, 636
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 349
Hin1II CATG 3 cut(s) 85, 455, 575
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 2 cut(s) 369, 384
HpaII CCGG 1 cut(s) 349
HphI GGTGA 5 cut(s) 338, 506, 523, 691, 698
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 3 cut(s) 130, 340, 700
Hpy188III TCNNGA 2 cut(s) 115, 362
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 308, 359
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 3 cut(s) 85, 455, 575
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 2 cut(s) 7, 647
LweI GCATC 3 cut(s) 67, 134, 670
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 298
MalI GATC 1 cut(s) 93
MbiI CCGCTC 1 cut(s) 684
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 494, 746
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 6 cut(s) 72, 119, 165, 180, 321, 525
MmeI TCCRAC 2 cut(s) 69, 255
MnlI CCTC 4 cut(s) 3, 162, 346, 735
MseI TTAA 6 cut(s) 51, 164, 168, 579, 591, 615
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 421
NdeII GATC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 3 cut(s) 85, 455, 575
NspI RCATGY 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 519
PacI TTAATTAA 1 cut(s) 168
PaeI GCATGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 369, 384
PinAI ACCGGT 1 cut(s) 348
PkrI GCNGC 2 cut(s) 22, 637
PshBI ATTAAT 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 6 cut(s) 51, 164, 168, 579, 591, 615
SatI GCNGC 2 cut(s) 21, 636
Sau3AI GATC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 600
SetI ASST 9 cut(s) 250, 301, 346, 438, 442, 673, 727, 733, 759
SfaNI GCATC 3 cut(s) 67, 134, 670
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 726
SmoI CTYRAG 1 cut(s) 726
SphI GCATGC 1 cut(s) 455
Sse9I AATT 6 cut(s) 72, 119, 165, 180, 321, 525
SsiI CCGC 4 cut(s) 23, 141, 665, 684
SspI AATATT 2 cut(s) 692, 709
SspMI CTAG 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 1 cut(s) 301
TasI AATT 6 cut(s) 72, 119, 165, 180, 321, 525
TfiI GAWTC 2 cut(s) 369, 384
Tru1I TTAA 6 cut(s) 51, 164, 168, 579, 591, 615
Tru9I TTAA 6 cut(s) 51, 164, 168, 579, 591, 615
TscAI CASTG 2 cut(s) 70, 663
TseI GCWGC 2 cut(s) 20, 635
TspDTI ATGAA 3 cut(s) 69, 90, 299
TspGWI ACGGA 2 cut(s) 362, 533
TspRI CASTG 2 cut(s) 70, 663
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 455
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.