MD07G1274200.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000238
Physical Location & Seq
Forward (+)
33971910 .. 33981477
9568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1274200.v1.1.491

Sequence Viewer

Length: 945 bp
ATGTGGTGCTTCAGAAGAAAGGGGCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTCAAGGGATTGATGCCACTGGTCTCACCGCCATTGTTACAGATGGAGCATCCAGTGGTATTGGCACCGAAACTGCACGCGTTCTTGCACTGCGTGGCGCCCATGTAGTTATGGCAGTGAGGAACATGGCAGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATTCCCAGTGCCAAAGTTGATGCCATGGAATTGGATCTCAGTTCGTTATCATCCGTTAGCAAATTCGCCTCGGATTTCAATTCCTCTGGTCTTCCTCTTAACATCCTAATTAACAATGCAGGAGTTATGGGAACCCCTTTCACGCTTTCGAAGGACAAGATCGAACTTCAGTTCGCGACAAACCACGTAGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAGCACGCAAAAGCAGCAAAGAAGGGAGAATCGTAAATGTGTCCTCAGAAGGTCACCGCTACCCGTATCCTGAAGGAATTCGTTTTGATAAAATTAACGACCAACAAGGGTACAGCATCTTTCGTGCATATTTCCAATCGAAGCTTGCTAACATTTTGCACGCTAATGAGCTTGCAAGACGCTTAAAGGAAGAAGGAGCTGATATAACTGCAAACTCGCTTCACCCTGGTGCAATTGTTACCAATCTGTTTCGTTATAACAGCGCTATTAGCGGGTTTGTTAATGTGCTTGGTAGAGGTGTGTTTAAAAATGTTAAGCAGGGAGCGGCAACGATGTGCTATGTGGCACTGCATCCACAAGTCAAGGGGGTGACGGGCGAATATTTTTGGGACAGTAACCTATCCAAGCCAAGTCGACAAGGTCAAGACGCGGAGATGGCAAAGAAACTATGGGATTTCAGCATGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

315

Amino Acids

34.16

Weight (kDa)

9.39

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 181 4.1e-25 short chain dehydrogenase
adh_short_C2 PF13561 37 - 248 5.2e-17 Enoyl-(Acyl carrier protein) reductase
KR PF08659 37 - 128 4.9e-06 KR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AccB1I GGYRCC 2 cut(s) 128, 161
AccBSI CCGCTC 1 cut(s) 791
AccI GTMKAC 1 cut(s) 880
AccII CGCG 3 cut(s) 144, 407, 896
AciI CCGC 5 cut(s) 93, 523, 738, 791, 896
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 2 cut(s) 293, 543
AcuI CTGAAG 2 cut(s) 383, 558
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 578
AfeI AGCGCT 1 cut(s) 730
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 691
AleI CACNNNNGTG 1 cut(s) 693
AluBI AGCT 3 cut(s) 610, 637, 665
AluI AGCT 3 cut(s) 610, 637, 665
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 273
Aor51HI AGCGCT 1 cut(s) 730
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 194, 480
ApoI RAATTY 2 cut(s) 293, 543
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 2 cut(s) 164, 731
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 82, 512, 680, 847
AsuII TTCGAA 1 cut(s) 380
BanI GGYRCC 2 cut(s) 128, 161
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 2 cut(s) 206, 492
BccI CCATC 3 cut(s) 34, 101, 895
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 2 cut(s) 445, 543
BcoDI GTCTC 1 cut(s) 92
BfoI RGCGCY 2 cut(s) 165, 732
BfuI GTATCC 2 cut(s) 445, 543
BisI GCNGC 3 cut(s) 195, 481, 792
BlsI GCNGC 3 cut(s) 196, 482, 793
Bme1390I CCNGG 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 4 cut(s) 24, 130, 163, 364
BmrFI CCNGG 1 cut(s) 693
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 6 cut(s) 67, 122, 196, 241, 591, 826
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 255, 300, 691
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 88, 117, 237
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 3 cut(s) 255, 300, 691
BseGI GGATG 4 cut(s) 113, 281, 333, 817
BseMII CTCAG 2 cut(s) 283, 525
BseNI ACTGG 3 cut(s) 88, 117, 237
BseXI GCAGC 2 cut(s) 206, 492
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 3 cut(s) 144, 407, 896
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 2 cut(s) 128, 161
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 869
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 380
Bsp143I GATC 2 cut(s) 265, 390
Bsp19I CCATGG 1 cut(s) 255
Bsp68I TCGCGA 1 cut(s) 407
BspACI CCGC 5 cut(s) 93, 523, 738, 791, 896
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 282, 524
BspFNI CGCG 3 cut(s) 144, 407, 896
BspLI GGNNCC 4 cut(s) 24, 130, 163, 364
BspPI GGATC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 2 cut(s) 128, 161
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 3 cut(s) 88, 117, 237
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 255, 300, 691
BssMI GATC 2 cut(s) 265, 390
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 860
BstACI GRCGYC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 5 cut(s) 142, 472, 612, 627, 639
BstDEI CTNAG 2 cut(s) 269, 511
BstDSI CCRYGG 1 cut(s) 255
BstEII GGTNACC 1 cut(s) 518
BstF5I GGATG 4 cut(s) 113, 281, 333, 817
BstFNI CGCG 3 cut(s) 144, 407, 896
BstH2I RGCGCY 2 cut(s) 165, 732
BstHHI GCGC 2 cut(s) 164, 731
BstKTI GATC 2 cut(s) 268, 393
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 265, 390
BstMWI GCNNNNNNNGC 3 cut(s) 480, 735, 902
BstNI CCWGG 1 cut(s) 693
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 691
BstUI CGCG 3 cut(s) 144, 407, 896
BstV1I GCAGC 2 cut(s) 206, 492
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 2 cut(s) 445, 543
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 4 cut(s) 113, 281, 333, 817
BtsI GCAGTG 3 cut(s) 152, 186, 812
BtsIMutI CAGTG 6 cut(s) 81, 124, 152, 186, 244, 812
BtuMI TCGCGA 1 cut(s) 407
Cac8I GCNNGC 5 cut(s) 142, 472, 612, 627, 639
CfoI GCGC 2 cut(s) 164, 731
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 2 cut(s) 654, 902
Csp6I GTAC 1 cut(s) 577
CviAII CATG 4 cut(s) 167, 190, 256, 928
CviJI RGCY 6 cut(s) 25, 197, 610, 637, 665, 874
CviKI_1 RGCY 6 cut(s) 25, 197, 610, 637, 665, 874
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 269, 511
DinI GGCGCC 1 cut(s) 163
DpnI GATC 2 cut(s) 267, 392
DpnII GATC 2 cut(s) 265, 390
DraI TTTAAA 1 cut(s) 772
DraIII CACNNNGTG 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 92
Eco47III AGCGCT 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 383, 558
Eco91I GGTNACC 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 170, 193, 259, 931
FaqI GGGAC 1 cut(s) 869
FatI CATG 4 cut(s) 166, 189, 255, 927
FauI CCCGC 1 cut(s) 731
FblI GTMKAC 1 cut(s) 880
Fnu4HI GCNGC 3 cut(s) 195, 481, 792
FokI GGATG 4 cut(s) 100, 268, 320, 804
Fsp4HI GCNGC 3 cut(s) 195, 481, 792
GlaI GCGC 2 cut(s) 163, 730
GluI GCNGC 3 cut(s) 195, 481, 792
HaeII RGCGCY 2 cut(s) 165, 732
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 198
HgaI GACGC 2 cut(s) 654, 902
HhaI GCGC 2 cut(s) 164, 731
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 170, 193, 259, 931
Hin6I GCGC 2 cut(s) 162, 729
HinP1I GCGC 2 cut(s) 162, 729
HincII GTYRAC 1 cut(s) 881
HindII GTYRAC 1 cut(s) 881
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 1 cut(s) 495
HpaII CCGG 1 cut(s) 198
HphI GGTGA 4 cut(s) 82, 512, 680, 847
Hpy166II GTNNAC 1 cut(s) 881
Hpy188I TCNGA 3 cut(s) 14, 304, 514
Hpy188III TCNNGA 3 cut(s) 406, 536, 890
Hpy8I GTNNAC 1 cut(s) 881
HpyAV CCTTC 6 cut(s) 220, 376, 482, 509, 533, 653
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 480, 735, 902
HpyF3I CTNAG 2 cut(s) 269, 511
HpySE526I ACGT 1 cut(s) 417
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 170, 193, 259, 931
HspAI GCGC 2 cut(s) 162, 729
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 265, 390
LmnI GCTCC 3 cut(s) 110, 662, 788
Lsp1109I GCAGC 2 cut(s) 206, 492
LweI GCATC 6 cut(s) 67, 122, 196, 241, 591, 826
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 6 cut(s) 61, 100, 518, 703, 835, 860
MalI GATC 2 cut(s) 267, 392
MbiI CCGCTC 1 cut(s) 791
MboI GATC 2 cut(s) 265, 390
MboII GAAGA 6 cut(s) 27, 36, 68, 314, 472, 668
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 265
MluCI AATT 8 cut(s) 231, 260, 293, 310, 339, 543, 558, 699
MluI ACGCGT 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 6 cut(s) 177, 310, 325, 336, 520, 755
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 7 cut(s) 330, 342, 561, 650, 747, 771, 780
MslI CAYNNNNRTG 2 cut(s) 630, 693
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 693
MunI CAATTG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 3 cut(s) 144, 407, 896
MwoI GCNNNNNNNGC 3 cut(s) 480, 735, 902
NarI GGCGCC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 265, 390
NlaIII CATG 4 cut(s) 170, 193, 259, 931
NlaIV GGNNCC 4 cut(s) 24, 130, 163, 364
NmuCI GTSAC 2 cut(s) 518, 835
NruI TCGCGA 1 cut(s) 407
NspV TTCGAA 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 495
PflFI GACNNNGTC 1 cut(s) 885
PkrI GCNGC 3 cut(s) 196, 482, 793
PluTI GGCGCC 1 cut(s) 165
Ppu21I YACGTR 1 cut(s) 418
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 691
PspEI GGTNACC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 4 cut(s) 24, 130, 163, 364
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 885
RruI TCGCGA 1 cut(s) 407
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 2 cut(s) 630, 693
SalI GTCGAC 1 cut(s) 879
SaqAI TTAA 7 cut(s) 330, 342, 561, 650, 747, 771, 780
SatI GCNGC 3 cut(s) 195, 481, 792
Sau3AI GATC 2 cut(s) 265, 390
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 693
SetI ASST 9 cut(s) 420, 424, 520, 612, 639, 667, 766, 867, 889
SfaNI GCATC 6 cut(s) 67, 122, 196, 241, 591, 826
SfoI GGCGCC 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 630, 693
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 8 cut(s) 231, 260, 293, 310, 339, 543, 558, 699
SsiI CCGC 5 cut(s) 93, 523, 738, 791, 896
SspDI GGCGCC 1 cut(s) 161
SspI AATATT 1 cut(s) 848
StyD4I CCNGG 1 cut(s) 691
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 1 cut(s) 420
TaqI TCGA 4 cut(s) 380, 393, 605, 880
TasI AATT 8 cut(s) 231, 260, 293, 310, 339, 543, 558, 699
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 7 cut(s) 330, 342, 561, 650, 747, 771, 780
Tru9I TTAA 7 cut(s) 330, 342, 561, 650, 747, 771, 780
TscAI CASTG 6 cut(s) 88, 124, 159, 186, 244, 819
TseFI GTSAC 2 cut(s) 518, 835
TseI GCWGC 2 cut(s) 194, 480
Tsp45I GTSAC 2 cut(s) 518, 835
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 6 cut(s) 88, 124, 159, 186, 244, 819
Tth111I GACNNNGTC 1 cut(s) 885
XapI RAATTY 2 cut(s) 293, 543
XmiI GTMKAC 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.