RLG00000026491

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000238
Physical Location & Seq
Reverse (-)
3375100 .. 3377922
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026491

Sequence Viewer

Length: 942 bp
ATGCACAGACCTTGCAGTTCTTACATGGTCTTATGGGAACCTTTTCTTTTCGCTCTGGATGTTGTCATTATAGGAGCATCTAGTGGCATTGGCCGTGAAACTATGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGAAGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTTAGTTCATTGTCGTCTGTGAGGAAATTTGCATCAGATTACAAATCCGCTGGTCGTCCTCTAAACATCTTAGTTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAGGACTGCACGTTCAAGTAGAAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTATGCATATCGTGAAGGAATCCGTTTTGATAGAATCAGCGACCCATCAGGGTACAGCAGTTGGTCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAGCTTTCAAAACAATTAAAGGAAGATGGGGCAAATATAACTTCAAATTCACTTCACCCTGGTGTAATTCCCACCAATCTTTTCCGTCATAACGTTGTTATCAATGGTAATCATACTTTGGTTTTCTGGATTGATGCAGGGCTTGTTAATGTGCTCGGTAGATTTGTGCTTAAAAACGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCACTGCATCCGCAAGCTAAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTGCAAGCCAAGACCTCAAGCTGAAGATGAGTTGTTGGCAAAGAAGCTCTGGGATTTCAGCAAGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

314

Amino Acids

34.63

Weight (kDa)

9.48

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 21 - 167 1.3e-25 short chain dehydrogenase
KR PF08659 21 - 120 6.3e-08 KR domain
adh_short_C2 PF13561 25 - 229 3.1e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 837
AciI CCGC 4 cut(s) 161, 279, 818, 837
AclI AACGTT 2 cut(s) 690, 774
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 2 cut(s) 257, 643
AcuI CTGAAG 3 cut(s) 347, 498, 906
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 1 cut(s) 542
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 4 cut(s) 359, 441, 606, 642
AjnI CCWGG 1 cut(s) 655
AleI CACNNNNGTG 1 cut(s) 657
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 7 cut(s) 482, 574, 578, 601, 824, 884, 910
AluI AGCT 7 cut(s) 482, 574, 578, 601, 824, 884, 910
Alw21I GWGCWC 1 cut(s) 753
AlwI GGATC 1 cut(s) 237
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 158, 788
ApoI RAATTY 2 cut(s) 257, 643
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AsiGI ACCGGT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 4 cut(s) 476, 644, 844, 851
AsuNHI GCTAGC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 532, 565
BanI GGYRCC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 145, 800
BccI CCATC 2 cut(s) 541, 617
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 657
BciVI GTATCC 2 cut(s) 409, 481
BclI TGATCA 1 cut(s) 135
BfaI CTAG 2 cut(s) 81, 575
BfuI GTATCC 2 cut(s) 409, 481
BisI GCNGC 2 cut(s) 159, 789
BlsI GCNGC 2 cut(s) 160, 790
Bme1390I CCNGG 1 cut(s) 657
BmiI GGNNCC 2 cut(s) 39, 127
BmrFI CCNGG 1 cut(s) 657
BmsI GCATC 5 cut(s) 86, 205, 272, 721, 823
BmtI GCTAGC 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 864
BsaJI CCNNGG 2 cut(s) 219, 655
BsaWI WCCGGW 1 cut(s) 486
Bse118I RCCGGY 1 cut(s) 486
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 219, 655
BseGI GGATG 2 cut(s) 64, 814
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 2 cut(s) 145, 800
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 125
BshTI ACCGGT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 1 cut(s) 487
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 130, 753
Bsp143I GATC 2 cut(s) 135, 229
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 4 cut(s) 161, 279, 818, 837
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 39, 127
BspOI GCTAGC 1 cut(s) 578
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 837
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 219, 655
BssMI GATC 2 cut(s) 135, 229
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 1 cut(s) 857
BstC8I GCNNGC 4 cut(s) 576, 591, 822, 869
BstDEI CTNAG 2 cut(s) 233, 301
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 64, 814
BstKTI GATC 2 cut(s) 138, 232
BstMBI GATC 2 cut(s) 135, 229
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 145, 800
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 2 cut(s) 409, 481
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 64, 814
BtsI GCAGTG 3 cut(s) 116, 201, 809
BtsIMutI CAGTG 3 cut(s) 116, 201, 809
Cac8I GCNNGC 4 cut(s) 576, 591, 822, 869
Cfr10I RCCGGY 1 cut(s) 486
Csp6I GTAC 1 cut(s) 541
CspAI ACCGGT 1 cut(s) 486
CviAII CATG 5 cut(s) 25, 131, 139, 220, 590
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 233, 301
DpnI GATC 2 cut(s) 137, 231
DpnII GATC 2 cut(s) 135, 229
DraIII CACNNNGTG 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 219
Eco57I CTGAAG 3 cut(s) 347, 498, 906
EcoRII CCWGG 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 5 cut(s) 28, 134, 142, 223, 593
FatI CATG 5 cut(s) 24, 130, 138, 219, 589
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 559
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 159, 789
FokI GGATG 2 cut(s) 71, 801
Fsp4HI GCNGC 2 cut(s) 159, 789
FspBI CTAG 2 cut(s) 81, 575
GluI GCNGC 2 cut(s) 159, 789
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 487
Hin1II CATG 5 cut(s) 28, 134, 142, 223, 593
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 2 cut(s) 507, 522
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 487
HphI GGTGA 4 cut(s) 476, 644, 844, 851
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 268, 478, 853
Hpy188III TCNNGA 3 cut(s) 56, 500, 724
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 446, 497
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 3 cut(s) 436, 690, 774
HpyF3I CTNAG 2 cut(s) 233, 301
HpySE526I ACGT 3 cut(s) 436, 690, 774
Hsp92II CATG 5 cut(s) 28, 134, 142, 223, 593
Ksp22I TGATCA 1 cut(s) 135
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 135, 229
LmnI GCTCC 2 cut(s) 74, 785
Lsp1109I GCAGC 2 cut(s) 145, 800
LweI GCATC 5 cut(s) 86, 205, 272, 721, 823
MaeI CTAG 2 cut(s) 81, 575
MaeII ACGT 3 cut(s) 436, 690, 774
MalI GATC 2 cut(s) 137, 231
MbiI CCGCTC 1 cut(s) 837
MboI GATC 2 cut(s) 135, 229
MboII GAAGA 2 cut(s) 632, 899
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 130, 753
MluCI AATT 7 cut(s) 210, 257, 318, 459, 611, 643, 663
MmeI TCCRAC 2 cut(s) 207, 393
MnlI CCTC 5 cut(s) 141, 246, 300, 484, 888
Mph1103I ATGCAT 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 189, 306, 614, 744, 768
MslI CAYNNNNRTG 3 cut(s) 143, 489, 657
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 657
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 559
NdeII GATC 2 cut(s) 135, 229
NheI GCTAGC 1 cut(s) 574
NlaIII CATG 5 cut(s) 28, 134, 142, 223, 593
NlaIV GGNNCC 2 cut(s) 39, 127
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 593
OliI CACNNNNGTG 1 cut(s) 657
PaeI GCATGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 507, 522
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 2 cut(s) 160, 790
Psp1406I AACGTT 2 cut(s) 690, 774
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 2 cut(s) 39, 127
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 3 cut(s) 143, 489, 657
SaqAI TTAA 5 cut(s) 189, 306, 614, 744, 768
SatI GCNGC 2 cut(s) 159, 789
Sau3AI GATC 2 cut(s) 135, 229
ScrFI CCNGG 1 cut(s) 657
SduI GDGCHC 2 cut(s) 130, 753
SfaNI GCATC 5 cut(s) 86, 205, 272, 721, 823
SmiMI CAYNNNNRTG 3 cut(s) 143, 489, 657
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
SphI GCATGC 1 cut(s) 593
Sse9I AATT 7 cut(s) 210, 257, 318, 459, 611, 643, 663
SsiI CCGC 4 cut(s) 161, 279, 818, 837
SspI AATATT 2 cut(s) 845, 862
SspMI CTAG 2 cut(s) 81, 575
StyD4I CCNGG 1 cut(s) 655
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 3 cut(s) 439, 693, 777
TasI AATT 7 cut(s) 210, 257, 318, 459, 611, 643, 663
TfiI GAWTC 2 cut(s) 507, 522
Tru1I TTAA 5 cut(s) 189, 306, 614, 744, 768
Tru9I TTAA 5 cut(s) 189, 306, 614, 744, 768
TscAI CASTG 3 cut(s) 123, 208, 816
TseI GCWGC 2 cut(s) 158, 788
TspDTI ATGAA 2 cut(s) 228, 437
TspGWI ACGGA 2 cut(s) 500, 671
TspRI CASTG 3 cut(s) 123, 208, 816
XapI RAATTY 2 cut(s) 257, 643
XceI RCATGY 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 81, 575
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.