Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000238

Physical Location & Seq

Genomic Coordinates Reverse (-)

14882355 .. 14885656

Gene Structure 3302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG166100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTGGATATTTGGGTGGAAAGGGCCTTCTGGGTTTTCAGCTCGCTCTACAGCTGAGGATGTTACTCAAGGGATTGATGGAACTGGCCTCACTGCACTTGTTACAGGAGCTTCAAGTGGTCTTGGTTCGGAAACAACACGTGTTTTAGCATTGCGTGGTGTTCATGTTGTCATGGCAGTAAGGAATACAGATGCGGGTAGGGATGTCAAAGAATCAATACTTAAGGAAGTCCCCACTGCCAATATTGATGTCATGGAACTAGATCTCAGCTCATTGGCATCAGTAAGAAAATTTGCATCGGAATATAAATCATCTGGTCTTCCATTGAATATTCTGATTAATAATGCAGGTGTTATGGCAACTCCATTCATTCTTTCGCATGACAACATTGAACTGCAGTTTGCAACCAACCATTTAGGTCATTTTCTTTTGACAAACCTTCTATTGGATACCATGAAAAAGACAACAAGTGAAAGCAAAAAAGGAGGAAGGATCGTGATTGTATCATCAGAGGCTCATCGGTTTGCATATAGTGAGGGGATTCGCTTTGATATGATCAATGATGAATCGGGGTACAACAGTATGTATGCTTATGGACAATCAAAGCTAGCCAACATATTGCATGCTAGTGAGCTTGCAAAGCGCTTGAAGGCAGAAGGGGTTGATATAACTGCTAATTCCCTTCATCCTGGATCAATTGTTACCAATCTTCTACGGTACCACAGTTACATTAATGTTGTTGCTAATATGGTCGGCAAATATGTGCTTAAAAATGTTCACCAGGGAGCTGCGACTGAATGCTATTTGGCATTGCATCCGCAAGTTAAGGGTGTAAGTGGTGAGTATTTTATGGACAGCAACATTGCCAATCCAACGGCTCTGGCTAGAGATGCAGAATTGGCAAAGAAGCTATGGGACTTCAGTTTGAGCCTGACAGAACCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

315

Amino Acids

34.15

Weight (kDa)

6.8

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	31 - 177	4.5e-24	short chain dehydrogenase
KR	PF08659	31 - 132	4.4e-08	KR domain
adh_short_C2	PF13561	36 - 258	2.7e-13	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca	FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica	MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica	Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis	pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis	RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata	RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora	Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa	Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha	Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana	Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	717
AciI	CCGC	2 cut(s)	194, 818
AclWI	GGATC	2 cut(s)	500, 700
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	904
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	575, 719
AfeI	AGCGCT	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	137, 139
AgsI	TTSAA	4 cut(s)	114, 328, 392, 649
AjnI	CCWGG	2 cut(s)	688, 780
AluBI	AGCT	8 cut(s)	41, 53, 110, 270, 607, 634, 788, 910
AluI	AGCT	8 cut(s)	41, 53, 110, 270, 607, 634, 788, 910
AlwI	GGATC	2 cut(s)	500, 700
Aor51HI	AGCGCT	1 cut(s)	644
AoxI	GGCC	2 cut(s)	23, 85
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	290
AseI	ATTAAT	2 cut(s)	339, 732
Asp718I	GGTACC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	770, 851
AsuNHI	GCTAGC	1 cut(s)	607
BaeI	ACNNNNGTAYC	4 cut(s)	565, 598, 709, 742
BanI	GGYRCC	1 cut(s)	717
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	2 cut(s)	690, 782
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	555
BfaI	CTAG	4 cut(s)	260, 608, 627, 885
BfmI	CTRYAG	2 cut(s)	48, 395
BfoI	RGCGCY	1 cut(s)	646
BfrI	CTTAAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	2 cut(s)	690, 782
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	719
BmrFI	CCNGG	2 cut(s)	690, 782
BmsI	GCATC	5 cut(s)	181, 287, 305, 823, 880
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	3 cut(s)	149, 809, 861
BseBI	CCWGG	2 cut(s)	690, 782
BseDI	CCNNGG	1 cut(s)	781
BseGI	GGATG	4 cut(s)	64, 208, 685, 814
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	3 cut(s)	149, 809, 861
BseMII	CTCAG	2 cut(s)	45, 280
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	25, 87
BshNI	GGYRCC	1 cut(s)	717
BslFI	GGGAC	2 cut(s)	215, 929
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	215, 929
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	2 cut(s)	25, 87
Bsp143I	GATC	4 cut(s)	262, 492, 555, 692
BspACI	CCGC	2 cut(s)	194, 818
BspANI	GGCC	2 cut(s)	25, 87
BspCNI	CTCAG	2 cut(s)	46, 279
BspLI	GGNNCC	1 cut(s)	719
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	338
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	500, 700
BspT107I	GGYRCC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	221
BsrDI	GCAATG	3 cut(s)	149, 809, 861
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	781
BssMI	GATC	4 cut(s)	262, 492, 555, 692
Bst2UI	CCWGG	2 cut(s)	690, 782
Bst4CI	ACNGT	3 cut(s)	581, 717, 725
BstAFI	CTTAAG	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	43, 609, 624, 636
BstDEI	CTNAG	2 cut(s)	54, 266
BstF5I	GGATG	4 cut(s)	64, 208, 685, 814
BstH2I	RGCGCY	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	4 cut(s)	265, 495, 558, 695
BstMBI	GATC	4 cut(s)	262, 492, 555, 692
BstMWI	GCNNNNNNNGC	3 cut(s)	640, 890, 899
BstNI	CCWGG	2 cut(s)	690, 782
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	688, 780
BstSFI	CTRYAG	2 cut(s)	48, 395
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	25, 87
BtsCI	GGATG	4 cut(s)	64, 208, 685, 814
BtsI	GCAGTG	2 cut(s)	90, 234
BtsIMutI	CAGTG	2 cut(s)	90, 234
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	4 cut(s)	43, 609, 624, 636
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	574, 718
CviAII	CATG	6 cut(s)	164, 172, 253, 380, 454, 623
CviQI	GTAC	2 cut(s)	574, 718
DdeI	CTNAG	2 cut(s)	54, 266
DpnI	GATC	4 cut(s)	264, 494, 557, 694
DpnII	GATC	4 cut(s)	262, 492, 555, 692
Eco47III	AGCGCT	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	904
Eco72I	CACGTG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	688, 780
FaeI	CATG	6 cut(s)	167, 175, 256, 383, 457, 626
FaqI	GGGAC	2 cut(s)	215, 929
FatI	CATG	6 cut(s)	163, 171, 252, 379, 453, 622
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	4 cut(s)	71, 215, 672, 801
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	4 cut(s)	260, 608, 627, 885
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	789
HaeII	RGCGCY	1 cut(s)	646
HaeIII	GGCC	2 cut(s)	25, 87
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	6 cut(s)	167, 175, 256, 383, 457, 626
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	212, 541, 566
HphI	GGTGA	2 cut(s)	770, 851
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	4 cut(s)	130, 301, 336, 511
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	6 cut(s)	36, 449, 483, 643, 650, 692
HpyCH4III	ACNGT	3 cut(s)	581, 717, 725
HpyCH4IV	ACGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	640, 890, 899
HpyF3I	CTNAG	2 cut(s)	54, 266
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	6 cut(s)	167, 175, 256, 383, 457, 626
HspAI	GCGC	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	262, 492, 555, 692
LmnI	GCTCC	2 cut(s)	107, 785
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	5 cut(s)	181, 287, 305, 823, 880
MaeI	CTAG	4 cut(s)	260, 608, 627, 885
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	4 cut(s)	61, 100, 700, 725
MalI	GATC	4 cut(s)	264, 494, 557, 694
MboI	GATC	4 cut(s)	262, 492, 555, 692
MboII	GAAGA	2 cut(s)	311, 701
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	4 cut(s)	290, 676, 696, 896
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	5 cut(s)	49, 98, 479, 505, 529
MseI	TTAA	5 cut(s)	222, 339, 732, 768, 825
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	690, 782
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	2 cut(s)	690, 782
MwoI	GCNNNNNNNGC	3 cut(s)	640, 890, 899
NdeII	GATC	4 cut(s)	262, 492, 555, 692
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	6 cut(s)	167, 175, 256, 383, 457, 626
NlaIV	GGNNCC	1 cut(s)	719
NspI	RCATGY	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	3 cut(s)	212, 541, 566
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	790
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	140
PshBI	ATTAAT	2 cut(s)	339, 732
Psp6I	CCWGG	2 cut(s)	688, 780
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	688, 780
PspN4I	GGNNCC	1 cut(s)	719
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	575, 719
RsaNI	GTAC	2 cut(s)	574, 718
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	5 cut(s)	222, 339, 732, 768, 825
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	4 cut(s)	262, 492, 555, 692
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	690, 782
SfaNI	GCATC	5 cut(s)	181, 287, 305, 823, 880
SfcI	CTRYAG	2 cut(s)	48, 395
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	66, 221
SmoI	CTYRAG	2 cut(s)	66, 221
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	4 cut(s)	290, 676, 696, 896
SsiI	CCGC	2 cut(s)	194, 818
SspI	AATATT	2 cut(s)	244, 331
SspMI	CTAG	4 cut(s)	260, 608, 627, 885
StyD4I	CCNGG	2 cut(s)	688, 780
TaaI	ACNGT	3 cut(s)	581, 717, 725
TaiI	ACGT	1 cut(s)	142
TasI	AATT	4 cut(s)	290, 676, 696, 896
TfiI	GAWTC	3 cut(s)	212, 541, 566
Tru1I	TTAA	5 cut(s)	222, 339, 732, 768, 825
Tru9I	TTAA	5 cut(s)	222, 339, 732, 768, 825
TscAI	CASTG	2 cut(s)	97, 241
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	5 cut(s)	152, 358, 470, 579, 674
TspRI	CASTG	2 cut(s)	97, 241
Vha464I	CTTAAG	1 cut(s)	221
VspI	ATTAAT	2 cut(s)	339, 732
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	626
XspI	CTAG	4 cut(s)	260, 608, 627, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.