RLG00000003993

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000238
Physical Location & Seq
Reverse (-)
55084513 .. 55086509
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003993

Sequence Viewer

Length: 993 bp
ATGGGGATTTTTGGCAAGAAAGCAGCATCTGGATTCTCTGCCTCTTCCACAGCAGAACAAGTTACTCAAGGAATTGATGGAACTGGTCTTACTGCCATTGTTACAGGAGCCACAAATGGTATTGGCCTAGAGACAGCGCGTGTTCTTGCATTGCGTGGTGTTCATGTAGTAATGGCAGTAAGGAACATGGATGCCGGTACCAATGTCAAAGAAGCAGTCCTCAAAGAAATCCCGGATGCAAAAATTGATGTTATGGAGTTAGATCTCAGCTCATTAGCATCTGTCAGAAAATTTGGAGCAGAGTTTGATTCCAGAGGCCTTCCCTTGAATATCCTTATTAACAATGCAGGGGTTATGGCAGATAAGTTCAAGCTATCTCAAGACAACATAGAGCTCAATTTTGCGACCAACCATTTAGGTCATTTTCTTCTCACAAATCTGTTGTTGGAGAACATGAAACACACATCGAGAGAAAGCGGCATAGAGGGGAGAATTGTTAATGTATCATCTCTTGGCCATACATATGTATACAATGAAGGAATTCGTTTCGATAGTTTCAATGATGAATCGAGATACAACAAGTATGTTGCATATGGAGAATCGAAGCTAGCTAACATACTGCATGCTAATGAGCTTACAACGCTCTTCAAGGAAGAAGGAATTGAGATAACTGCTAATTCTCTTCATCCTGGAGCAATTCACACGAATATTATACGCAATGATATGTTTTTAAAGTGTAAGCTAGTCTTCTCAGTGTGTTGGGTATATTTGTGGCCAAAACTACTGAGCAGGTACTTCTTTAGGCTTCACAGTATATGTAGCATCATTGGAGCGGCAACCACATGCTTTGTGGCACTGAATCCACAAGTGAAGGGAGTAAGCGGAGAATACTTTGTGGACTGTAACATTGCCAAACCGAGCTCTCAGGCCAAAGATGCAGATTTGGCTAGGAGACTCTGGATTTTTAGCTCGAATTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

331

Amino Acids

36.2

Weight (kDa)

7.68

Isoelectric Point (pI)

26.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 239 7.3e-27 short chain dehydrogenase
KR PF08659 31 - 126 1.9e-08 KR domain
adh_short_C2 PF13561 36 - 237 1.7e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 780
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 833
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 139
AciI CCGC 3 cut(s) 477, 833, 882
AcoI YGGCCR 2 cut(s) 514, 773
AcsI RAATTY 3 cut(s) 290, 540, 973
AfaI GTAC 2 cut(s) 199, 794
AgsI TTSAA 4 cut(s) 328, 370, 559, 649
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 9 cut(s) 270, 373, 394, 607, 611, 634, 742, 921, 969
AluI AGCT 9 cut(s) 270, 373, 394, 607, 611, 634, 742, 921, 969
Alw21I GWGCWC 2 cut(s) 396, 923
Alw26I GTCTC 2 cut(s) 125, 946
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 5 cut(s) 124, 316, 514, 773, 927
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 290, 540, 973
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
Asp700I GAANNNNTTC 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BalI TGGCCA 2 cut(s) 516, 775
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 2 cut(s) 396, 923
BbsI GAAGAC 1 cut(s) 739
Bbv12I GWGCWC 2 cut(s) 396, 923
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 125, 946
BfaI CTAG 4 cut(s) 128, 608, 743, 948
BfuAI ACCTGC 1 cut(s) 780
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 24, 478, 834
BlsI GCNGC 3 cut(s) 25, 479, 835
Bme1390I CCNGG 2 cut(s) 233, 690
BmiI GGNNCC 2 cut(s) 109, 199
BmrFI CCNGG 2 cut(s) 233, 690
BmsI GCATC 6 cut(s) 35, 181, 226, 287, 831, 925
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 739
BpmI CTGGAG 1 cut(s) 711
BpuEI CTTGAG 3 cut(s) 51, 363, 971
BpuMI CCSGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 3 cut(s) 149, 724, 906
BseBI CCWGG 1 cut(s) 690
BseGI GGATG 3 cut(s) 196, 241, 685
BseMI GCAATG 3 cut(s) 149, 724, 906
BseMII CTCAG 4 cut(s) 280, 765, 776, 938
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 5 cut(s) 126, 318, 516, 775, 929
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 396, 923
BsiSI CCGG 2 cut(s) 195, 233
BsmAI GTCTC 2 cut(s) 125, 946
BsnI GGCC 5 cut(s) 126, 318, 516, 775, 929
Bsp1286I GDGCHC 2 cut(s) 396, 923
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 477, 833, 882
BspANI GGCC 5 cut(s) 126, 318, 516, 775, 929
BspCNI CTCAG 4 cut(s) 279, 764, 777, 937
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 109, 199
BspMI ACCTGC 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 833
BsrDI GCAATG 3 cut(s) 149, 724, 906
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 194
BssMI GATC 1 cut(s) 262
BssNAI GTATAC 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 812, 902
Bst6I CTCTTC 3 cut(s) 49, 650, 687
BstC8I GCNNGC 2 cut(s) 609, 624
BstDEI CTNAG 4 cut(s) 266, 751, 785, 924
BstF5I GGATG 3 cut(s) 196, 241, 685
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 125, 946
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 640, 935, 944
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 2 cut(s) 626, 846
BstSCI CCNGG 2 cut(s) 231, 688
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BstZ17I GTATAC 1 cut(s) 529
BsuRI GGCC 5 cut(s) 126, 318, 516, 775, 929
BtsCI GGATG 3 cut(s) 196, 241, 685
BtsIMutI CAGTG 2 cut(s) 759, 854
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 2 cut(s) 609, 624
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 2 cut(s) 198, 793
CspCI CAANNNNNGTGG 2 cut(s) 829, 864
CviAII CATG 5 cut(s) 164, 187, 454, 623, 843
CviQI GTAC 2 cut(s) 198, 793
DdeI CTNAG 4 cut(s) 266, 751, 785, 924
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 514, 773
Eam1104I CTCTTC 3 cut(s) 49, 650, 687
EarI CTCTTC 3 cut(s) 49, 650, 687
Ecl136II GAGCTC 2 cut(s) 394, 921
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 396, 923
Eco53kI GAGCTC 2 cut(s) 394, 921
EcoICRI GAGCTC 2 cut(s) 394, 921
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 688
EcoT38I GRGCYC 2 cut(s) 396, 923
FaeI CATG 5 cut(s) 167, 190, 457, 626, 846
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 5 cut(s) 163, 186, 453, 622, 842
FauNDI CATATG 2 cut(s) 523, 592
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 24, 478, 834
FokI GGATG 3 cut(s) 203, 248, 672
FriOI GRGCYC 2 cut(s) 396, 923
Fsp4HI GCNGC 3 cut(s) 24, 478, 834
FspBI CTAG 4 cut(s) 128, 608, 743, 948
GlaI GCGC 1 cut(s) 138
GluI GCNGC 3 cut(s) 24, 478, 834
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 5 cut(s) 126, 318, 516, 775, 929
HapII CCGG 2 cut(s) 195, 233
HhaI GCGC 1 cut(s) 139
Hin1II CATG 5 cut(s) 167, 190, 457, 626, 846
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 6 cut(s) 33, 308, 566, 599, 859, 954
HpaII CCGG 2 cut(s) 195, 233
Hpy166II GTNNAC 2 cut(s) 529, 898
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 6 cut(s) 30, 312, 380, 468, 570, 958
Hpy8I GTNNAC 2 cut(s) 529, 898
HpyAV CCTTC 4 cut(s) 329, 530, 650, 865
HpyCH4III ACNGT 2 cut(s) 812, 902
HpyCH4V TGCA 6 cut(s) 149, 239, 347, 590, 622, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 935, 944
HpyF3I CTNAG 4 cut(s) 266, 751, 785, 924
Hsp92II CATG 5 cut(s) 167, 190, 457, 626, 846
HspAI GCGC 1 cut(s) 137
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 4 cut(s) 107, 296, 692, 830
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 6 cut(s) 35, 181, 226, 287, 831, 925
MaeI CTAG 4 cut(s) 128, 608, 743, 948
MaeIII GTNAC 3 cut(s) 61, 100, 902
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 833
MboI GATC 1 cut(s) 262
MboII GAAGA 6 cut(s) 36, 419, 637, 665, 674, 739
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 396, 923
MlsI TGGCCA 2 cut(s) 516, 775
MluNI TGGCCA 2 cut(s) 516, 775
MlyI GAGTC 1 cut(s) 948
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 52, 230, 308, 478
Mox20I TGGCCA 2 cut(s) 516, 775
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 2 cut(s) 516, 775
MseI TTAA 3 cut(s) 339, 498, 731
MslI CAYNNNNRTG 2 cut(s) 522, 627
Msp20I TGGCCA 2 cut(s) 516, 775
MspI CCGG 2 cut(s) 195, 233
MspR9I CCNGG 2 cut(s) 233, 690
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 640, 935, 944
NciI CCSGG 1 cut(s) 233
NdeI CATATG 2 cut(s) 523, 592
NdeII GATC 1 cut(s) 262
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 5 cut(s) 167, 190, 457, 626, 846
NlaIV GGNNCC 2 cut(s) 109, 199
NspI RCATGY 2 cut(s) 626, 846
PaeI GCATGC 1 cut(s) 626
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 5 cut(s) 33, 308, 566, 599, 859
PfoI TCCNGGA 2 cut(s) 231, 688
PkrI GCNGC 3 cut(s) 25, 479, 835
PleI GAGTC 1 cut(s) 948
PpsI GAGTC 1 cut(s) 948
Psp124BI GAGCTC 2 cut(s) 396, 923
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 109, 199
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 199, 794
RsaNI GTAC 2 cut(s) 198, 793
RseI CAYNNNNRTG 2 cut(s) 522, 627
SacI GAGCTC 2 cut(s) 396, 923
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 339, 498, 731
SatI GCNGC 3 cut(s) 24, 478, 834
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 948
ScrFI CCNGG 2 cut(s) 233, 690
SduI GDGCHC 2 cut(s) 396, 923
SfaNI GCATC 6 cut(s) 35, 181, 226, 287, 831, 925
SmiMI CAYNNNNRTG 2 cut(s) 522, 627
SmlI CTYRAG 3 cut(s) 66, 378, 986
SmoI CTYRAG 3 cut(s) 66, 378, 986
SphI GCATGC 1 cut(s) 626
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 3 cut(s) 477, 833, 882
SspI AATATT 1 cut(s) 709
SspMI CTAG 4 cut(s) 128, 608, 743, 948
SstI GAGCTC 2 cut(s) 396, 923
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 231, 688
TaaI ACNGT 2 cut(s) 812, 902
TaqI TCGA 5 cut(s) 467, 549, 569, 602, 971
TauI GCSGC 2 cut(s) 480, 836
TfiI GAWTC 5 cut(s) 33, 308, 566, 599, 859
Tru1I TTAA 3 cut(s) 339, 498, 731
Tru9I TTAA 3 cut(s) 339, 498, 731
TscAI CASTG 2 cut(s) 759, 861
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 5 cut(s) 152, 470, 549, 579, 674
TspRI CASTG 2 cut(s) 759, 861
XapI RAATTY 3 cut(s) 290, 540, 973
XceI RCATGY 2 cut(s) 626, 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 4 cut(s) 128, 608, 743, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.