RchiOBHm_Chr7g0197221

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000238
Physical Location & Seq
Reverse (-)
15108811 .. 15112805
3995 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17642

Sequence Viewer

Length: 1068 bp
ATGGGGATATTCAGCAAGAAAGGAGCATCAGGATTCTCGGCCTCTTCCACAGCAGAACAAGTTACTCAAGGGATTGATGGAAATAGTCTTACTTCAATTCAATCATCTGCAAAACAAATGGGGATATTCAGCAAGAAAGGAGCATCAGGATTCTCGGCCTCTTCCACAGCAGAACAAGTTACTCAAGGGATTGATGGAACTGGTCTTACTTCAATTGTTACAGGAGCCTCAAGTGGTATTGGCGTAGAGACGGCGCGTGTTCTTGCATTGCGCGGTGTTCATGTAATAATGGCAGTAAGGAATATAGATGTTGGTACCAATGTTAAAGAAGCAATCCTTAAAGAAATCCCCAGTGCTAAAATTGATGTCATGGAGTTAGATCTCAGTTCATTGGCATCCGTAAGAAAATTTGCAGCAGAGTATAATTCCAAAGGCCTTCCCTTGAATATCCTTATTAACAATGCAGGGGTCATGGCAGATAAATTCAAGCTATCTCAAGACAACATAGAACTCGATTTTGCAACTAACCATTTAGGTCATTTTCTTCTCACAAATCTTCTGTTAGATAACATGAAACACACATCAAGAAAAAGCAGCATAGAGGGGAGAATTGTTAATGTATCATCAATTGCCCATAGATATATATACCGTGAAGGAATTCGTTTTGATAGTATTAATGACGAATCAAGATACAACAAATATGTTGCTTACATAGAATCCAAGCTCGCCAACATATTGCATGCTAATGAGCTTACAAGGCGCCTCAAGGAAGAAAGGGTTGAGATAACTGCTAATTCTCTTCATCCTGGAACAATTCGCACCAATATTATGCATAATGATATCAGTGTAAAGTGTCTTCTGAAGGTGCTCAGGATCCTTTTTTTGAGCAAAACTATTCAGCAGGGAGCAGCAACCACATGCTTTTTGGCACTGAATCCACAAGTTAAGGGAGTAAGCGGTGAATACTATGCGGATTGTAACATTGCCAAACCGATATCTCAGGCAAATGATGCAGATTTGGCTAAGAGACTCTGGGATTTTAGCTTGAGTTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

355

Amino Acids

38.53

Weight (kDa)

9.18

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 70 - 201 8.4e-08 KR domain
adh_short PF00106 72 - 279 3.4e-27 short chain dehydrogenase
adh_short_C2 PF13561 75 - 321 5.6e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 2 cut(s) 314, 759
AccII CGCG 2 cut(s) 256, 273
AciI CCGC 3 cut(s) 273, 957, 971
AclWI GGATC 2 cut(s) 868, 881
AcsI RAATTY 3 cut(s) 407, 482, 657
AcuI CTGAAG 1 cut(s) 881
AcyI GRCGYC 1 cut(s) 760
AfaI GTAC 1 cut(s) 316
AgsI TTSAA 5 cut(s) 96, 101, 213, 445, 487
AjnI CCWGG 1 cut(s) 805
AluBI AGCT 4 cut(s) 490, 724, 751, 1044
AluI AGCT 4 cut(s) 490, 724, 751, 1044
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 2 cut(s) 242, 1021
AlwI GGATC 2 cut(s) 868, 881
AoxI GGCC 3 cut(s) 39, 156, 433
ApeKI GCWGC 3 cut(s) 413, 594, 908
ApoI RAATTY 3 cut(s) 407, 482, 657
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 657
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 3 cut(s) 256, 273, 762
AsuHPI GGTGA 1 cut(s) 971
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BamHI GGATCC 1 cut(s) 873
BanI GGYRCC 2 cut(s) 314, 759
BarI GAAGNNNNNNTAC 2 cut(s) 840, 872
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 3 cut(s) 425, 606, 920
BccI CCATC 2 cut(s) 71, 188
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 807
BcoDI GTCTC 2 cut(s) 242, 1021
BfoI RGCGCY 1 cut(s) 763
BglII AGATCT 1 cut(s) 379
BisI GCNGC 3 cut(s) 414, 595, 909
BlsI GCNGC 3 cut(s) 415, 596, 910
Bme1390I CCNGG 1 cut(s) 807
BmiI GGNNCC 4 cut(s) 226, 316, 761, 875
BmrFI CCNGG 1 cut(s) 807
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 4 cut(s) 35, 152, 404, 1000
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 869
BpuEI CTTGAG 7 cut(s) 51, 168, 214, 480, 749, 1046, 1066
BsaHI GRCGYC 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 205, 351
Bse3DI GCAATG 2 cut(s) 266, 981
BseBI CCWGG 1 cut(s) 807
BseGI GGATG 2 cut(s) 395, 802
BseMI GCAATG 2 cut(s) 266, 981
BseMII CTCAG 3 cut(s) 397, 883, 1013
BseNI ACTGG 2 cut(s) 205, 351
BseXI GCAGC 3 cut(s) 425, 606, 920
Bsh1236I CGCG 2 cut(s) 256, 273
BshFI GGCC 3 cut(s) 41, 158, 435
BshNI GGYRCC 2 cut(s) 314, 759
BsiHKAI GWGCWC 1 cut(s) 870
BsmAI GTCTC 2 cut(s) 242, 1021
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 3 cut(s) 41, 158, 435
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 2 cut(s) 379, 873
BspACI CCGC 3 cut(s) 273, 957, 971
BspANI GGCC 3 cut(s) 41, 158, 435
BspCNI CTCAG 3 cut(s) 396, 882, 1012
BspFNI CGCG 2 cut(s) 256, 273
BspLI GGNNCC 4 cut(s) 226, 316, 761, 875
BspPI GGATC 2 cut(s) 868, 881
BspT107I GGYRCC 2 cut(s) 314, 759
BsrDI GCAATG 2 cut(s) 266, 981
BsrI ACTGG 2 cut(s) 205, 351
BssMI GATC 2 cut(s) 379, 873
BssNI GRCGYC 1 cut(s) 760
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 3 cut(s) 49, 166, 804
BstACI GRCGYC 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstC8I GCNNGC 2 cut(s) 726, 741
BstDEI CTNAG 4 cut(s) 383, 869, 999, 1023
BstF5I GGATG 2 cut(s) 395, 802
BstFNI CGCG 2 cut(s) 256, 273
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 3 cut(s) 256, 273, 762
BstKTI GATC 2 cut(s) 382, 876
BstMAI GTCTC 2 cut(s) 242, 1021
BstMBI GATC 2 cut(s) 379, 873
BstMWI GCNNNNNNNGC 3 cut(s) 757, 1010, 1019
BstNI CCWGG 1 cut(s) 807
BstNSI RCATGY 2 cut(s) 743, 921
BstSCI CCNGG 1 cut(s) 805
BstUI CGCG 2 cut(s) 256, 273
BstV1I GCAGC 3 cut(s) 425, 606, 920
BstV2I GAAGAC 1 cut(s) 848
BstX2I RGATCY 2 cut(s) 379, 873
BstYI RGATCY 2 cut(s) 379, 873
BsuRI GGCC 3 cut(s) 41, 158, 435
BtsCI GGATG 2 cut(s) 395, 802
BtsIMutI CAGTG 3 cut(s) 358, 850, 929
Cac8I GCNNGC 2 cut(s) 726, 741
CfoI GCGC 3 cut(s) 256, 273, 762
Csp6I GTAC 1 cut(s) 315
CviAII CATG 6 cut(s) 281, 370, 472, 571, 740, 918
CviJI RGCY 9 cut(s) 41, 158, 227, 435, 490, 724, 751, 1022, 1044
CviKI_1 RGCY 9 cut(s) 41, 158, 227, 435, 490, 724, 751, 1022, 1044
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 4 cut(s) 383, 869, 999, 1023
DinI GGCGCC 1 cut(s) 761
DpnI GATC 2 cut(s) 381, 875
DpnII GATC 2 cut(s) 379, 873
Eam1104I CTCTTC 3 cut(s) 49, 166, 804
EarI CTCTTC 3 cut(s) 49, 166, 804
Eco147I AGGCCT 1 cut(s) 435
Eco32I GATATC 2 cut(s) 841, 996
Eco57I CTGAAG 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 805
EcoRV GATATC 2 cut(s) 841, 996
EcoT22I ATGCAT 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 761
EheI GGCGCC 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 6 cut(s) 284, 373, 475, 574, 743, 921
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 6 cut(s) 280, 369, 471, 570, 739, 917
Fnu4HI GCNGC 3 cut(s) 414, 595, 909
FokI GGATG 2 cut(s) 382, 789
Fsp4HI GCNGC 3 cut(s) 414, 595, 909
GlaI GCGC 3 cut(s) 255, 272, 761
GluI GCNGC 3 cut(s) 414, 595, 909
HaeII RGCGCY 1 cut(s) 763
HaeIII GGCC 3 cut(s) 41, 158, 435
HhaI GCGC 3 cut(s) 256, 273, 762
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 6 cut(s) 284, 373, 475, 574, 743, 921
Hin6I GCGC 3 cut(s) 254, 271, 760
HinP1I GCGC 3 cut(s) 254, 271, 760
HinfI GANTC 6 cut(s) 33, 150, 683, 716, 934, 1029
HphI GGTGA 1 cut(s) 971
Hpy188I TCNGA 1 cut(s) 861
Hpy188III TCNNGA 6 cut(s) 30, 147, 497, 585, 687, 871
HpyAV CCTTC 3 cut(s) 446, 647, 856
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4V TGCA 8 cut(s) 110, 266, 413, 464, 521, 739, 832, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 757, 1010, 1019
HpyF3I CTNAG 4 cut(s) 383, 869, 999, 1023
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 6 cut(s) 284, 373, 475, 574, 743, 921
HspAI GCGC 3 cut(s) 254, 271, 760
KasI GGCGCC 1 cut(s) 759
KpnI GGTACC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 379, 873
LmnI GCTCC 4 cut(s) 23, 140, 224, 905
Lsp1109I GCAGC 3 cut(s) 425, 606, 920
LweI GCATC 4 cut(s) 35, 152, 404, 1000
MaeIII GTNAC 4 cut(s) 61, 178, 217, 977
MalI GATC 2 cut(s) 381, 875
MboI GATC 2 cut(s) 379, 873
MboII GAAGA 7 cut(s) 36, 153, 536, 548, 782, 791, 848
MfeI CAATTG 2 cut(s) 213, 627
MflI RGATCY 2 cut(s) 379, 873
MhlI GDGCHC 1 cut(s) 870
Mly113I GGCGCC 1 cut(s) 760
MlyI GAGTC 1 cut(s) 1023
MnlI CCTC 5 cut(s) 52, 169, 238, 595, 773
Mph1103I ATGCAT 1 cut(s) 834
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 6 cut(s) 324, 339, 456, 615, 675, 945
MslI CAYNNNNRTG 1 cut(s) 744
MspR9I CCNGG 1 cut(s) 807
MunI CAATTG 2 cut(s) 213, 627
MvaI CCWGG 1 cut(s) 807
MvnI CGCG 2 cut(s) 256, 273
MwoI GCNNNNNNNGC 3 cut(s) 757, 1010, 1019
NarI GGCGCC 1 cut(s) 760
NdeII GATC 2 cut(s) 379, 873
NlaIII CATG 6 cut(s) 284, 373, 475, 574, 743, 921
NlaIV GGNNCC 4 cut(s) 226, 316, 761, 875
NmeAIII GCCGAG 2 cut(s) 17, 134
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 2 cut(s) 743, 921
PaeI GCATGC 1 cut(s) 743
PceI AGGCCT 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 5 cut(s) 33, 150, 683, 716, 934
PfoI TCCNGGA 1 cut(s) 805
PkrI GCNGC 3 cut(s) 415, 596, 910
PleI GAGTC 1 cut(s) 1023
PluTI GGCGCC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 1023
PshBI ATTAAT 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 805
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 4 cut(s) 226, 316, 761, 875
PsrI GAACNNNNNNTAC 2 cut(s) 190, 222
PsuI RGATCY 2 cut(s) 379, 873
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 6 cut(s) 324, 339, 456, 615, 675, 945
SatI GCNGC 3 cut(s) 414, 595, 909
Sau3AI GATC 2 cut(s) 379, 873
SchI GAGTC 1 cut(s) 1023
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 870
SetI ASST 6 cut(s) 492, 538, 726, 753, 867, 1046
SfaNI GCATC 4 cut(s) 35, 152, 404, 1000
SfoI GGCGCC 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 7 cut(s) 66, 183, 229, 495, 764, 1045, 1061
SmoI CTYRAG 7 cut(s) 66, 183, 229, 495, 764, 1045, 1061
SphI GCATGC 1 cut(s) 743
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 3 cut(s) 273, 957, 971
SspDI GGCGCC 1 cut(s) 759
SspI AATATT 1 cut(s) 826
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 805
TaaI ACNGT 1 cut(s) 650
TaqI TCGA 1 cut(s) 513
TfiI GAWTC 5 cut(s) 33, 150, 683, 716, 934
Tru1I TTAA 6 cut(s) 324, 339, 456, 615, 675, 945
Tru9I TTAA 6 cut(s) 324, 339, 456, 615, 675, 945
TscAI CASTG 3 cut(s) 358, 850, 936
TseI GCWGC 3 cut(s) 413, 594, 908
TspDTI ATGAA 4 cut(s) 269, 378, 587, 791
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 3 cut(s) 358, 850, 936
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 3 cut(s) 407, 482, 657
XceI RCATGY 2 cut(s) 743, 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XmnI GAANNNNTTC 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.