Rh7AG164300

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000238
Physical Location & Seq
Reverse (-)
13978041 .. 13980224
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG164300.1

Sequence Viewer

Length: 885 bp
ATGGGGATATTATTTAGCAAGAAAGGACCATCTGGATTTTCTGCTTTTTCGACAGCAGAGGAGGCTACTCATGGGATTGATGGAACTGGTCTTACTGCCGTAGTCACAGGAGCTTCAAGTGGTATTGGCGTAGAGACATCACATGTCCTTGCTTTGCGTGGTGTCCATGTAGTAATGGCAGTCAGGAACATTGATGCTGGGAATAATGTTAAAGAAGCAATACTTAAGGACATTCCCACTGCTAAAATTGATATCATGGAATTAGACCTCAGCTCTTTAGCATCTGTAACAAAATTTGCAGCGGACTATAATTCTAAAGGCCTTCCACTGAACATCCTTATTAACAATGCAGGGGTTATGGCAACTCCATTCAAGTTTTCTCAAGATAACATAGAACTTCAGTTTGCTACGAACCATTTAGGTCATTTTCTCCTCACAAATCTTCTCTTGGAGACAATGAAACACACATCTCGAGAGAGCAGAATAGAAGGAAGAGTTGTTAATGTAGCATCTTTAGGCCATAAATTTGGGTATCCAGAAGGAATTGTTTTCGATGAAATCAATGATGAATCAAGGTACAACAAATATCGTGCATATAACCAATCCAAGATTGCTAACATATTACATGCTAATGAGCTTGCAAGGCGTTTAAAGGAAGAAGGTGTGGAGATAACTGCTAATTCTCTTCATCCCGGAGATATTTACACAAATCTTTTATGCAATGTTCATAGCTTTTTTCAATGTTTTTTTAAGACGCTGTCCCTGCTGGGTATATTTATGTCAAAAACCGTTGAGCAGGGAGCGGCGACAACATGCTTTGTGTCACTTCATCCACAAGTAAAGGGAGTAAGCGGGGAATACTTTTCAGGGTGCAACATCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

294

Amino Acids

31.9

Weight (kDa)

6.41

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 183 1.2e-24 short chain dehydrogenase
adh_short_C2 PF13561 37 - 251 2.5e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 803
AciI CCGC 3 cut(s) 302, 803, 852
AcsI RAATTY 2 cut(s) 293, 524
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 578
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 3 cut(s) 117, 373, 740
AluBI AGCT 4 cut(s) 113, 273, 637, 732
AluI AGCT 4 cut(s) 113, 273, 637, 732
Alw26I GTCTC 2 cut(s) 128, 446
Ama87I CYCGRG 1 cut(s) 471
AoxI GGCC 2 cut(s) 319, 517
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 293, 524
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 471
AvaII GGWCC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 37, 74
BceAI ACGGC 1 cut(s) 83
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 128, 446
BfrI CTTAAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 2 cut(s) 300, 804
BlsI GCNGC 2 cut(s) 301, 805
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 184, 290, 518
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 693
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 727
BseGI GGATG 3 cut(s) 333, 688, 829
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 74, 422
BseXI GCAGC 1 cut(s) 311
BseYI CCCAGC 2 cut(s) 197, 766
BshFI GGCC 2 cut(s) 321, 519
BsiHKCI CYCGRG 1 cut(s) 471
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 1 cut(s) 745
BsmAI GTCTC 2 cut(s) 128, 446
BsmFI GGGAC 1 cut(s) 745
BsnI GGCC 2 cut(s) 321, 519
BsoBI CYCGRG 1 cut(s) 471
BspACI CCGC 3 cut(s) 302, 803, 852
BspANI GGCC 2 cut(s) 321, 519
BspCNI CTCAG 1 cut(s) 282
BspTI CTTAAG 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 790
Bst6I CTCTTC 2 cut(s) 487, 690
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 333, 688, 829
BstMAI GTCTC 2 cut(s) 128, 446
BstMWI GCNNNNNNNGC 3 cut(s) 62, 643, 763
BstNSI RCATGY 3 cut(s) 146, 629, 816
BstSCI CCNGG 1 cut(s) 691
BstV1I GCAGC 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 2 cut(s) 321, 519
BtsCI GGATG 3 cut(s) 333, 688, 829
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 326
Cac8I GCNNGC 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 763
Csp6I GTAC 1 cut(s) 577
CviAII CATG 6 cut(s) 71, 143, 167, 256, 626, 813
CviJI RGCY 7 cut(s) 65, 113, 273, 321, 519, 637, 732
CviKI_1 RGCY 7 cut(s) 65, 113, 273, 321, 519, 637, 732
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 1 cut(s) 269
DraI TTTAAA 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 487, 690
EarI CTCTTC 2 cut(s) 487, 690
Eco147I AGGCCT 1 cut(s) 321
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 471
EcoRV GATATC 1 cut(s) 253
FaeI CATG 6 cut(s) 74, 146, 170, 259, 629, 816
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 745
FatI CATG 6 cut(s) 70, 142, 166, 255, 625, 812
FauI CCCGC 1 cut(s) 845
Fnu4HI GCNGC 2 cut(s) 300, 804
FokI GGATG 3 cut(s) 320, 675, 816
Fsp4HI GCNGC 2 cut(s) 300, 804
GluI GCNGC 2 cut(s) 300, 804
GsaI CCCAGC 2 cut(s) 201, 770
HaeIII GGCC 2 cut(s) 321, 519
HapII CCGG 1 cut(s) 693
HgaI GACGC 1 cut(s) 763
Hin1II CATG 6 cut(s) 74, 146, 170, 259, 629, 816
HinfI GANTC 1 cut(s) 569
HpaII CCGG 1 cut(s) 693
HphI GGTGA 1 cut(s) 871
Hpy188III TCNNGA 6 cut(s) 33, 184, 383, 471, 473, 536
HpyAV CCTTC 4 cut(s) 332, 482, 533, 653
HpyCH4III ACNGT 1 cut(s) 790
HpyCH4V TGCA 6 cut(s) 299, 350, 593, 641, 720, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 643, 763
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 6 cut(s) 74, 146, 170, 259, 629, 816
LmnI GCTCC 2 cut(s) 110, 800
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 3 cut(s) 184, 290, 518
MaeIII GTNAC 3 cut(s) 103, 286, 822
MbiI CCGCTC 1 cut(s) 803
MboII GAAGA 4 cut(s) 434, 504, 668, 677
MluCI AATT 7 cut(s) 246, 260, 293, 310, 524, 543, 679
MnlI CCTC 4 cut(s) 52, 55, 278, 443
MseI TTAA 6 cut(s) 210, 225, 342, 501, 650, 750
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 62, 643, 763
NciI CCSGG 1 cut(s) 693
NlaIII CATG 6 cut(s) 74, 146, 170, 259, 629, 816
NmuCI GTSAC 2 cut(s) 103, 822
NspI RCATGY 3 cut(s) 146, 629, 816
PaeR7I CTCGAG 1 cut(s) 471
PceI AGGCCT 1 cut(s) 321
PciI ACATGT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 569
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 2 cut(s) 301, 805
PscI ACATGT 1 cut(s) 142
PspFI CCCAGC 2 cut(s) 197, 766
PspPI GGNCC 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PsyI GACNNNGTC 1 cut(s) 757
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 6 cut(s) 210, 225, 342, 501, 650, 750
SatI GCNGC 2 cut(s) 300, 804
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 693
SetI ASST 9 cut(s) 115, 270, 275, 424, 578, 639, 664, 734, 884
SfaNI GCATC 3 cut(s) 184, 290, 518
Sfr274I CTCGAG 1 cut(s) 471
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 3 cut(s) 224, 381, 471
SmoI CTYRAG 3 cut(s) 224, 381, 471
Sse9I AATT 7 cut(s) 246, 260, 293, 310, 524, 543, 679
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 3 cut(s) 302, 803, 852
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 1 cut(s) 790
TaqI TCGA 3 cut(s) 50, 472, 552
TasI AATT 7 cut(s) 246, 260, 293, 310, 524, 543, 679
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 6 cut(s) 210, 225, 342, 501, 650, 750
Tru9I TTAA 6 cut(s) 210, 225, 342, 501, 650, 750
TscAI CASTG 2 cut(s) 244, 333
TseFI GTSAC 2 cut(s) 103, 822
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 103, 822
TspDTI ATGAA 6 cut(s) 473, 570, 582, 677, 716, 818
TspRI CASTG 2 cut(s) 244, 333
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 2 cut(s) 293, 524
XceI RCATGY 3 cut(s) 146, 629, 816
XhoI CTCGAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.