Rh7DG161200

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000238
Physical Location & Seq
Forward (+)
14363574 .. 14365786
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG161200.1

Sequence Viewer

Length: 948 bp
ATGGGGATTTTTGGCAAGAAAGCAGCATCTGGATTCTCTGCCTCTTCCACAGCAGAACAAGTTACTCAAGGAATTGATGGAACTGGTCTTACTGCCATTGTTACAGGAGCCACAAATGGTATTGGCCTAGAGACAGCGCGTGTTCTTGCATTGCGTGGTGTTCACGTAGTAATGGCAGTAAGGAACATGGATGCCGGTACCAATGTCAAAGAAGCAATCCTCAAAGAAATCCCGGATGCAAAAATTGATATTATGGAGTTAGATCTCAGCTCATTGGCATCTGTCAGAAAATTTGGAGCAGAGTTTGATTCCAGAGGCCTTCCCTTGAATATCCTTATTAACAATGCAGGGGTTATGGCAGATAAGTTCAAGCTATCACAAGACAACATAGAACTCAATTTTGCGACCAACCATTTAGGTCATTTTCTTCTCACAAATCTGTTGTTGGAGAACATGAAACACACATCGAGAGAAAGCGGCATCGAGGGGAGAATTGTTAATGTATCATCTCTTGGCCATACATATGTATACAACGAAGGAATTCGTTTCGATTGTTTCAATGATGAATCGAGATACAACAAGTATGTTGCATATGGAGAATCGAAGCTGGCTAATATACTGCATGCTAATGAGCTTACAACGCTCTTCAAGGAAGAAGGAATTGAGATGACTGCTAATTCTCTTCATCCTGGAGCAATTCACACAAATATTATACGCAATGATATGTTTTTAAAGTGTCTTCTCAGTGTGTTGGGTATATTTGTGGCCAAAACTACTCAGCAGGGAGCGGCAACCACATGCTTTGTGGCACTGAATCCACAAGTGAAGGGAGTAAGCGGAGAATACTTTGTGGACTGTAACATTGCCAAACCGAGCTCTCAGGCCAAAGATGCAGATTTGGCTAGGAGACTCTGGATTTTTAGCTCGAATTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

315

Amino Acids

34.16

Weight (kDa)

6.45

Isoelectric Point (pI)

25.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 173 5e-25 short chain dehydrogenase
KR PF08659 31 - 126 4.6e-08 KR domain
adh_short_C2 PF13561 36 - 239 1.5e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 788
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 139
AciI CCGC 3 cut(s) 477, 788, 837
AcoI YGGCCR 2 cut(s) 514, 765
AcsI RAATTY 3 cut(s) 290, 540, 928
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 4 cut(s) 328, 370, 559, 649
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 6 cut(s) 270, 373, 607, 634, 876, 924
AluI AGCT 6 cut(s) 270, 373, 607, 634, 876, 924
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 2 cut(s) 125, 901
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 5 cut(s) 124, 316, 514, 765, 882
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 290, 540, 928
Asp700I GAANNNNTTC 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BalI TGGCCA 2 cut(s) 516, 767
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 125, 901
BfaI CTAG 2 cut(s) 128, 903
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 24, 478, 789
BlsI GCNGC 3 cut(s) 25, 479, 790
Bme1390I CCNGG 2 cut(s) 233, 690
BmiI GGNNCC 2 cut(s) 109, 199
BmrFI CCNGG 2 cut(s) 233, 690
BmsI GCATC 6 cut(s) 35, 181, 226, 287, 489, 880
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 711
BpuEI CTTGAG 2 cut(s) 51, 926
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 3 cut(s) 149, 724, 861
BseBI CCWGG 1 cut(s) 690
BseGI GGATG 3 cut(s) 196, 241, 685
BseMI GCAATG 3 cut(s) 149, 724, 861
BseMII CTCAG 4 cut(s) 280, 757, 791, 893
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 5 cut(s) 126, 318, 516, 767, 884
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 878
BsiSI CCGG 2 cut(s) 195, 233
BsmAI GTCTC 2 cut(s) 125, 901
BsnI GGCC 5 cut(s) 126, 318, 516, 767, 884
Bsp1286I GDGCHC 1 cut(s) 878
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 477, 788, 837
BspANI GGCC 5 cut(s) 126, 318, 516, 767, 884
BspCNI CTCAG 4 cut(s) 279, 756, 790, 892
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 109, 199
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 788
BsrDI GCAATG 3 cut(s) 149, 724, 861
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 194
BssMI GATC 1 cut(s) 262
BssNAI GTATAC 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 3 cut(s) 49, 650, 687
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 609, 624
BstDEI CTNAG 4 cut(s) 266, 743, 777, 879
BstF5I GGATG 3 cut(s) 196, 241, 685
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 125, 901
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 640, 890, 899
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 2 cut(s) 626, 801
BstSCI CCNGG 2 cut(s) 231, 688
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BstZ17I GTATAC 1 cut(s) 529
BsuRI GGCC 5 cut(s) 126, 318, 516, 767, 884
BtsCI GGATG 3 cut(s) 196, 241, 685
BtsIMutI CAGTG 2 cut(s) 751, 809
Cac8I GCNNGC 2 cut(s) 609, 624
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 4 cut(s) 187, 454, 623, 798
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 4 cut(s) 266, 743, 777, 879
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 514, 765
Eam1104I CTCTTC 3 cut(s) 49, 650, 687
EarI CTCTTC 3 cut(s) 49, 650, 687
Ecl136II GAGCTC 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 878
Eco53kI GAGCTC 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 688
EcoT38I GRGCYC 1 cut(s) 878
FaeI CATG 4 cut(s) 190, 457, 626, 801
FatI CATG 4 cut(s) 186, 453, 622, 797
FauNDI CATATG 2 cut(s) 523, 592
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 24, 478, 789
FokI GGATG 3 cut(s) 203, 248, 672
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 3 cut(s) 24, 478, 789
FspBI CTAG 2 cut(s) 128, 903
GlaI GCGC 1 cut(s) 138
GluI GCNGC 3 cut(s) 24, 478, 789
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 5 cut(s) 126, 318, 516, 767, 884
HapII CCGG 2 cut(s) 195, 233
HhaI GCGC 1 cut(s) 139
Hin1II CATG 4 cut(s) 190, 457, 626, 801
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 6 cut(s) 33, 308, 566, 599, 814, 909
HpaII CCGG 2 cut(s) 195, 233
Hpy166II GTNNAC 3 cut(s) 163, 529, 853
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 5 cut(s) 30, 312, 468, 570, 913
Hpy8I GTNNAC 3 cut(s) 163, 529, 853
HpyAV CCTTC 4 cut(s) 329, 530, 650, 820
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 6 cut(s) 149, 239, 347, 590, 622, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 890, 899
HpyF3I CTNAG 4 cut(s) 266, 743, 777, 879
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 4 cut(s) 190, 457, 626, 801
HspAI GCGC 1 cut(s) 137
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 4 cut(s) 107, 296, 692, 785
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 6 cut(s) 35, 181, 226, 287, 489, 880
MaeI CTAG 2 cut(s) 128, 903
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 61, 100, 857
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 788
MboI GATC 1 cut(s) 262
MboII GAAGA 6 cut(s) 36, 419, 637, 665, 674, 731
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 878
MlsI TGGCCA 2 cut(s) 516, 767
MluNI TGGCCA 2 cut(s) 516, 767
MlyI GAGTC 1 cut(s) 903
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 52, 230, 308, 478
Mox20I TGGCCA 2 cut(s) 516, 767
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 2 cut(s) 516, 767
MseI TTAA 3 cut(s) 339, 498, 731
MslI CAYNNNNRTG 2 cut(s) 522, 627
Msp20I TGGCCA 2 cut(s) 516, 767
MspI CCGG 2 cut(s) 195, 233
MspR9I CCNGG 2 cut(s) 233, 690
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 640, 890, 899
NciI CCSGG 1 cut(s) 233
NdeI CATATG 2 cut(s) 523, 592
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 190, 457, 626, 801
NlaIV GGNNCC 2 cut(s) 109, 199
NspI RCATGY 2 cut(s) 626, 801
PaeI GCATGC 1 cut(s) 626
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 5 cut(s) 33, 308, 566, 599, 814
PfoI TCCNGGA 2 cut(s) 231, 688
PkrI GCNGC 3 cut(s) 25, 479, 790
PleI GAGTC 1 cut(s) 903
PpsI GAGTC 1 cut(s) 903
Ppu21I YACGTR 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 878
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 109, 199
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 522, 627
SacI GAGCTC 1 cut(s) 878
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 339, 498, 731
SatI GCNGC 3 cut(s) 24, 478, 789
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 903
ScrFI CCNGG 2 cut(s) 233, 690
SduI GDGCHC 1 cut(s) 878
SetI ASST 8 cut(s) 168, 272, 375, 421, 609, 636, 878, 926
SfaNI GCATC 6 cut(s) 35, 181, 226, 287, 489, 880
SmiMI CAYNNNNRTG 2 cut(s) 522, 627
SmlI CTYRAG 2 cut(s) 66, 941
SmoI CTYRAG 2 cut(s) 66, 941
SphI GCATGC 1 cut(s) 626
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 3 cut(s) 477, 788, 837
SspI AATATT 1 cut(s) 709
SspMI CTAG 2 cut(s) 128, 903
SstI GAGCTC 1 cut(s) 878
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 231, 688
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 1 cut(s) 168
TaqI TCGA 6 cut(s) 467, 483, 549, 569, 602, 926
TauI GCSGC 2 cut(s) 480, 791
TfiI GAWTC 5 cut(s) 33, 308, 566, 599, 814
Tru1I TTAA 3 cut(s) 339, 498, 731
Tru9I TTAA 3 cut(s) 339, 498, 731
TscAI CASTG 2 cut(s) 751, 816
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 470, 579, 674
TspRI CASTG 2 cut(s) 751, 816
XapI RAATTY 3 cut(s) 290, 540, 928
XceI RCATGY 2 cut(s) 626, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 2 cut(s) 128, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.