Rh2DG543200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000238
Physical Location & Seq
Forward (+)
77234822 .. 77236337
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG543200.1

Sequence Viewer

Length: 570 bp
ATGCAAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTACCTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGATGTGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTTAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCCACTGGTCGTCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTCATTTTCTACTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTTCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCAGTTTGCATATCGTGAAGGAATCCGTTTTGATAGAATCAACGACCCATCAGGGTACAGCAGTTGGCCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAAAACTTTCAAAACAAATAAAGGTATATATCTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

189

Amino Acids

20.77

Weight (kDa)

9.78

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 3 - 144 2e-22 short chain dehydrogenase
adh_short_C2 PF13561 3 - 143 5.8e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 40
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 2 cut(s) 281, 432
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 3 cut(s) 293, 375, 540
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 3 cut(s) 416, 508, 512
AluI AGCT 3 cut(s) 416, 508, 512
AlwI GGATC 1 cut(s) 171
AoxI GGCC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AsuHPI GGTGA 1 cut(s) 410
AsuNHI GCTAGC 1 cut(s) 508
BaeGI GKGCMC 1 cut(s) 64
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 2 cut(s) 343, 415
BclI TGATCA 1 cut(s) 69
BfaI CTAG 2 cut(s) 15, 509
BfuI GTATCC 2 cut(s) 343, 415
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 3 cut(s) 20, 139, 206
BmtI GCTAGC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 220, 421
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 220, 421
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 494
BsnI GGCC 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 69, 163
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 487
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 2 cut(s) 220, 421
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 69, 163
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 489, 510, 525
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 40
BstKTI GATC 2 cut(s) 72, 166
BstMBI GATC 2 cut(s) 69, 163
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 2 cut(s) 343, 415
BsuRI GGCC 1 cut(s) 487
BtgI CCRYGG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 27, 135, 213
Cac8I GCNNGC 3 cut(s) 489, 510, 525
CsiI ACCWGGT 1 cut(s) 55
Csp6I GTAC 1 cut(s) 475
CviAII CATG 4 cut(s) 65, 73, 154, 524
CviJI RGCY 5 cut(s) 92, 416, 487, 508, 512
CviKI_1 RGCY 5 cut(s) 92, 416, 487, 508, 512
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 71, 165
DpnII GATC 2 cut(s) 69, 163
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 281, 432
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 68, 76, 157, 527
FatI CATG 4 cut(s) 64, 72, 153, 523
FauI CCCGC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 15, 509
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 487
Hin1II CATG 4 cut(s) 68, 76, 157, 527
HinfI GANTC 2 cut(s) 441, 456
HphI GGTGA 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 202, 412
Hpy188III TCNNGA 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 380, 431
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 8 cut(s) 4, 50, 197, 248, 368, 428, 491, 523
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 4 cut(s) 68, 76, 157, 527
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 163
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 7 cut(s) 42, 69, 201, 234, 434, 456, 501
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 3 cut(s) 20, 139, 206
MabI ACCWGGT 1 cut(s) 55
MaeI CTAG 2 cut(s) 15, 509
MaeII ACGT 1 cut(s) 370
MalI GATC 2 cut(s) 71, 165
MboI GATC 2 cut(s) 69, 163
MboII GAAGA 1 cut(s) 553
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 5 cut(s) 144, 191, 237, 252, 393
MluI ACGCGT 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 141, 327
MnlI CCTC 4 cut(s) 75, 180, 234, 418
MseI TTAA 3 cut(s) 123, 236, 240
MslI CAYNNNNRTG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 40
NcoI CCATGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 493
NdeII GATC 2 cut(s) 69, 163
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 4 cut(s) 68, 76, 157, 527
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 1 cut(s) 527
PacI TTAATTAA 1 cut(s) 240
PaeI GCATGC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 441, 456
PkrI GCNGC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 3 cut(s) 123, 236, 240
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 69, 163
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 58, 322, 373, 418, 510, 514, 555
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 3 cut(s) 20, 139, 206
SmiMI CAYNNNNRTG 1 cut(s) 77
SphI GCATGC 1 cut(s) 527
Sse9I AATT 5 cut(s) 144, 191, 237, 252, 393
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 15, 509
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 373
TasI AATT 5 cut(s) 144, 191, 237, 252, 393
TfiI GAWTC 2 cut(s) 441, 456
Tru1I TTAA 3 cut(s) 123, 236, 240
Tru9I TTAA 3 cut(s) 123, 236, 240
TscAI CASTG 3 cut(s) 34, 142, 220
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 162, 371
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 3 cut(s) 34, 142, 220
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 527
XspI CTAG 2 cut(s) 15, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.