Prupe.5G102000_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000238
Physical Location & Seq
Forward (+)
10947448 .. 10950170
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G102000.1

Sequence Viewer

Length: 951 bp
ATGGGGATATTTAGCAGGAAAGGACCTTCTGGGTTTTCTCCCTCTTCTACAGCAGAGGAAGTTACTGAAGGGATTGATGGAACTGGTCTGACTGCCATTGTTACAGGAGCCTCAAGTGGTATCGGTGCAGAGACATCACGTGTTCTTGCGTTGCGTGGTGTTCATGTTGTTATGGCAATAAGGAACATGGATGCTGGGGCCAAAGTCAAAGAAGCAATCCTTGAAGAAATCTCCAACGCTAAGATTGATGTCATGGAGTTGGACCTGAGCTTGTTGGCATCTGTAAGAAAATTTGCAGCAGATTATAACTCCTCCGGCCTTCCATTGAACATTCTTATTAACAATGCAGGGGTAGGAGCATCTCCATTCAAGCTTTCTCAAGACAGCATAGAGCTGCTGTTTGCAACCAACCATTTAGGCCACTTTCTTCTCACCAATCTTCTGTTGGAGACCATGAAAAGCACATCGCGAGAAAGCAACATAGAGGGGAGAATTGTTAATGTATCATCACTACTTCATCCATATGGTTACCGTGAAGGAATTCGTTTCAATAAAATCAACGATGAATCAGGGTACAACAGATACTATAATTATGCGCAATCCAAGCTTGCTAACATCCTACATGCCAATGAGCTTACAAGGCGTCTCAAGGAAGAAGGGGTAGAGATAACAGCTAATTCTCTACATCCTGGAGCAATAGGAACGAATATTACGCGCCATGATAGCTTTTTACAATGTATCTTCAGTGTGCTGGGTATATTTTTCTCTAAAACTATCCAACAGGGAGCGGCAACGACATGCTTTGCAGCACTCCATCCACAAGTTAAGGGAGTAGGCGGCGTATACTTTTCAGACTGTAACATTGCCAAACCGAGCTCTAAGGCAAAAGATGCAGATTTGGCTACCAGGCTCTGGGATTTTAGCTTGAGTTTGACCGATGCCAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

34.05

Weight (kDa)

6.72

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
Acc16I TGCGCA 1 cut(s) 597
AccB7I CCANNNNNTGG 1 cut(s) 912
AccBSI CCGCTC 1 cut(s) 788
AccI GTMKAC 1 cut(s) 843
AccII CGCG 2 cut(s) 469, 715
AciI CCGC 2 cut(s) 788, 837
AcsI RAATTY 2 cut(s) 290, 540
AcuI CTGAAG 2 cut(s) 87, 727
AcvI CACGTG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 912
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 4 cut(s) 224, 328, 370, 550
AjnI CCWGG 2 cut(s) 688, 905
AluBI AGCT 9 cut(s) 270, 373, 394, 607, 634, 674, 726, 876, 924
AluI AGCT 9 cut(s) 270, 373, 394, 607, 634, 674, 726, 876, 924
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 3 cut(s) 125, 443, 650
AlwNI CAGNNNCTG 1 cut(s) 912
AoxI GGCC 3 cut(s) 198, 316, 418
ApeKI GCWGC 3 cut(s) 296, 394, 806
ApoI RAATTY 2 cut(s) 290, 540
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 2 cut(s) 598, 717
AspS9I GGNCC 3 cut(s) 23, 198, 262
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 2 cut(s) 23, 262
BanII GRGCYC 1 cut(s) 878
BbrPI CACGTG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 3 cut(s) 308, 381, 818
BccI CCATC 2 cut(s) 71, 822
BciT130I CCWGG 2 cut(s) 690, 907
BcoDI GTCTC 3 cut(s) 125, 443, 650
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 5 cut(s) 297, 395, 789, 807, 838
BlsI GCNGC 5 cut(s) 298, 396, 790, 808, 839
Bme1390I CCNGG 2 cut(s) 690, 907
Bme18I GGWCC 2 cut(s) 23, 262
BmgT120I GGNCC 3 cut(s) 23, 198, 262
BmiI GGNNCC 2 cut(s) 109, 199
BmrFI CCNGG 2 cut(s) 690, 907
BmsI GCATC 5 cut(s) 181, 287, 368, 880, 928
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 4 cut(s) 97, 363, 632, 946
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 912
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 861
BseBI CCWGG 2 cut(s) 690, 907
BseGI GGATG 5 cut(s) 196, 517, 615, 685, 814
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 308, 381, 818
BseYI CCCAGC 2 cut(s) 194, 751
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 2 cut(s) 469, 715
BshFI GGCC 3 cut(s) 200, 318, 420
BsiHKAI GWGCWC 1 cut(s) 878
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 912
BsmAI GTCTC 3 cut(s) 125, 443, 650
BsmBI CGTCTC 1 cut(s) 650
BsnI GGCC 3 cut(s) 200, 318, 420
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 878
Bsp68I TCGCGA 1 cut(s) 469
BspACI CCGC 2 cut(s) 788, 837
BspANI GGCC 3 cut(s) 200, 318, 420
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 2 cut(s) 469, 715
BspLI GGNNCC 2 cut(s) 109, 199
BspTNI GGTCTC 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 861
BsrI ACTGG 1 cut(s) 88
BssNAI GTATAC 1 cut(s) 844
BssNI GRCGYC 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 844
Bst2UI CCWGG 2 cut(s) 690, 907
Bst4CI ACNGT 2 cut(s) 533, 857
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 643
BstAPI GCANNNNNTGC 1 cut(s) 890
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 240, 266, 879
BstEII GGTNACC 1 cut(s) 527
BstF5I GGATG 5 cut(s) 196, 517, 615, 685, 814
BstFNI CGCG 2 cut(s) 469, 715
BstHHI GCGC 2 cut(s) 598, 717
BstMAI GTCTC 3 cut(s) 125, 443, 650
BstMWI GCNNNNNNNGC 5 cut(s) 604, 640, 723, 890, 899
BstNI CCWGG 2 cut(s) 690, 907
BstNSI RCATGY 2 cut(s) 626, 801
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 688, 905
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 2 cut(s) 469, 715
BstV1I GCAGC 3 cut(s) 308, 381, 818
BstZ17I GTATAC 1 cut(s) 844
BsuRI GGCC 3 cut(s) 200, 318, 420
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 5 cut(s) 196, 517, 615, 685, 814
BtsIMutI CAGTG 1 cut(s) 751
BtuMI TCGCGA 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 912
CfoI GCGC 2 cut(s) 598, 717
Cfr13I GGNCC 3 cut(s) 23, 198, 262
CseI GACGC 1 cut(s) 632
Csp6I GTAC 1 cut(s) 574
CviAII CATG 7 cut(s) 164, 187, 253, 454, 623, 719, 798
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 3 cut(s) 240, 266, 879
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 878
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 2 cut(s) 23, 262
Eco53kI GAGCTC 1 cut(s) 876
Eco57I CTGAAG 2 cut(s) 87, 727
Eco72I CACGTG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 688, 905
EcoT38I GRGCYC 1 cut(s) 878
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 7 cut(s) 167, 190, 256, 457, 626, 722, 801
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 7 cut(s) 163, 186, 252, 453, 622, 718, 797
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 5 cut(s) 297, 395, 789, 807, 838
FokI GGATG 5 cut(s) 203, 504, 602, 672, 801
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 5 cut(s) 297, 395, 789, 807, 838
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 2 cut(s) 597, 716
GluI GCNGC 5 cut(s) 297, 395, 789, 807, 838
GsaI CCCAGC 2 cut(s) 198, 755
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 3 cut(s) 200, 318, 420
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 632
HhaI GCGC 2 cut(s) 598, 717
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 7 cut(s) 167, 190, 256, 457, 626, 722, 801
Hin6I GCGC 2 cut(s) 596, 715
HinP1I GCGC 2 cut(s) 596, 715
HindIII AAGCTT 2 cut(s) 371, 605
HinfI GANTC 1 cut(s) 566
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 844
Hpy188I TCNGA 2 cut(s) 90, 853
Hpy188III TCNNGA 2 cut(s) 380, 468
Hpy8I GTNNAC 1 cut(s) 844
HpyAV CCTTC 5 cut(s) 36, 62, 329, 530, 650
HpyCH4III ACNGT 2 cut(s) 533, 857
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 6 cut(s) 128, 296, 347, 404, 806, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 604, 640, 723, 890, 899
HpyF3I CTNAG 3 cut(s) 240, 266, 879
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 7 cut(s) 167, 190, 256, 457, 626, 722, 801
HspAI GCGC 2 cut(s) 596, 715
LmnI GCTCC 4 cut(s) 107, 356, 692, 785
Lsp1109I GCAGC 3 cut(s) 308, 381, 818
LweI GCATC 5 cut(s) 181, 287, 368, 880, 928
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 4 cut(s) 61, 100, 527, 857
MbiI CCGCTC 1 cut(s) 788
MboII GAAGA 6 cut(s) 36, 236, 419, 431, 665, 733
MhlI GDGCHC 1 cut(s) 878
MluCI AATT 5 cut(s) 290, 492, 540, 589, 676
MmeI TCCRAC 4 cut(s) 240, 258, 426, 802
MnlI CCTC 5 cut(s) 49, 52, 121, 322, 478
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 3 cut(s) 339, 498, 825
MslI CAYNNNNRTG 2 cut(s) 522, 627
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 690, 907
MvaI CCWGG 2 cut(s) 690, 907
MvnI CGCG 2 cut(s) 469, 715
MwoI GCNNNNNNNGC 5 cut(s) 604, 640, 723, 890, 899
NdeI CATATG 1 cut(s) 523
NlaIII CATG 7 cut(s) 167, 190, 256, 457, 626, 722, 801
NlaIV GGNNCC 2 cut(s) 109, 199
NruI TCGCGA 1 cut(s) 469
NsbI TGCGCA 1 cut(s) 597
NspI RCATGY 2 cut(s) 626, 801
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 566
PflMI CCANNNNNTGG 1 cut(s) 912
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 5 cut(s) 298, 396, 790, 808, 839
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 23
PsiI TTATAA 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 688, 905
PspCI CACGTG 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 527
PspFI CCCAGC 2 cut(s) 194, 751
PspGI CCWGG 2 cut(s) 688, 905
PspN4I GGNNCC 2 cut(s) 109, 199
PspPI GGNCC 3 cut(s) 23, 198, 262
PspPPI RGGWCCY 1 cut(s) 23
PsrI GAACNNNNNNTAC 2 cut(s) 694, 726
PstNI CAGNNNCTG 1 cut(s) 912
RruI TCGCGA 1 cut(s) 469
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 522, 627
SacI GAGCTC 1 cut(s) 878
SaqAI TTAA 3 cut(s) 339, 498, 825
SatI GCNGC 5 cut(s) 297, 395, 789, 807, 838
Sau96I GGNCC 3 cut(s) 23, 198, 262
ScrFI CCNGG 2 cut(s) 690, 907
SduI GDGCHC 1 cut(s) 878
SfaNI GCATC 5 cut(s) 181, 287, 368, 880, 928
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 2 cut(s) 23, 262
SmiMI CAYNNNNRTG 2 cut(s) 522, 627
SmlI CTYRAG 4 cut(s) 112, 378, 647, 925
SmoI CTYRAG 4 cut(s) 112, 378, 647, 925
Sse9I AATT 5 cut(s) 290, 492, 540, 589, 676
SsiI CCGC 2 cut(s) 788, 837
SspI AATATT 1 cut(s) 709
SstI GAGCTC 1 cut(s) 878
StyD4I CCNGG 2 cut(s) 688, 905
TaaI ACNGT 2 cut(s) 533, 857
TaiI ACGT 1 cut(s) 142
TaqII GACCGA 1 cut(s) 950
TasI AATT 5 cut(s) 290, 492, 540, 589, 676
TauI GCSGC 2 cut(s) 791, 840
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 3 cut(s) 339, 498, 825
Tru9I TTAA 3 cut(s) 339, 498, 825
TscAI CASTG 1 cut(s) 751
TseI GCWGC 3 cut(s) 296, 394, 806
TspDTI ATGAA 4 cut(s) 152, 470, 506, 579
TspRI CASTG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 912
VpaK11BI GGWCC 2 cut(s) 23, 262
XapI RAATTY 2 cut(s) 290, 540
XceI RCATGY 2 cut(s) 626, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.