MD14G1106700.v1.1

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000238
Physical Location & Seq
Forward (+)
16678422 .. 16680770
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1106700.v1.1.491

Sequence Viewer

Length: 846 bp
ATGGGAGCCTCAAGTGGAATTGGCGCAGAGACAGCGCGTGTTCTTGCCTTGCGCGGTCTTCATGTAGTTATGGCAGTAAGGAACATGGATTCTGGCGCGACCGTCAAAGAAACAATCCTTAAAGAAATTCCGAACGCAAAAATTGATGTCAGGCAGTTAGACCTCAGCTCTTTGGCATCTGTAAGAAATTTTGCATCAGATTATAATTCCTCCGGCCTTCCACTCAATATCCTAATTAACAATGCAGGGGCAGGGGCAACTCCATTCAAGCTTTCTCAAGACAGCATAGAACTCGTGTTTGCAACTAACCATTTGGGTCATTTTCTTCTCACAAATCTTTTGTTGGAGACCATGAAAAGTACATCGCGAGAAAGCAACAGAGAGGGGAGAATTGTCAATGTATCATCACTACTTCATCAATATGGATACCGTGAAGGAATTCGTTTTGATAAAATTAATGATACAGCTGGCTACAACAGATATTTCGCCTATGCACAATCCAAGCTTGCTAACGTTTTGCATGCTAATGAGCTTACAAGGCGTATGAAGGAAGAAGGGGTAGAGATAACTGCCAATTCTCTTCATCCCGGAGCAATTGGCACCAAAATTACCCGCAATGATTGCTTTTTTCAGTGTTTATTCAACGTGTTCGGTATATTTACCGGTAAAACTATTCCGCAGGGTGCGGCAACCACATGCTTTGTGGCACTTCATCCACAAGTAAAGGGAGTAAGCGGCGAATACTTTGTAGACTGTAACATTGCCAAATCAAGCTCTCAGGCAAAAGATGCAGATTTGGCTGCAAAACTCTGGGATTTTAGTTTGACTTTTACCAATCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

282

Amino Acids

30.63

Weight (kDa)

8.83

Isoelectric Point (pI)

24.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 2 - 144 1.1e-23 short chain dehydrogenase
adh_short_C2 PF13561 2 - 206 2.4e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 750
AccII CGCG 4 cut(s) 37, 54, 98, 367
AciI CCGC 5 cut(s) 54, 613, 677, 686, 735
AclI AACGTT 1 cut(s) 513
AcsI RAATTY 3 cut(s) 126, 187, 438
AfaI GTAC 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 645
AgeI ACCGGT 1 cut(s) 662
AgsI TTSAA 2 cut(s) 268, 643
AluBI AGCT 6 cut(s) 168, 271, 467, 505, 532, 774
AluI AGCT 6 cut(s) 168, 271, 467, 505, 532, 774
Alw26I GTCTC 2 cut(s) 23, 341
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 3 cut(s) 126, 187, 438
AseI ATTAAT 1 cut(s) 456
AsiGI ACCGGT 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 4 cut(s) 26, 37, 54, 98
AsuC2I CCSGG 1 cut(s) 588
BanI GGYRCC 1 cut(s) 599
BauI CACGAG 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 787
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 2 cut(s) 23, 341
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 3 cut(s) 687, 736, 801
BlsI GCNGC 3 cut(s) 688, 737, 802
Bme1390I CCNGG 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 7, 601
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 3 cut(s) 185, 203, 778
BpiI GAAGAC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 662
Bse118I RCCGGY 1 cut(s) 662
Bse3DI GCAATG 2 cut(s) 622, 759
BseGI GGATG 2 cut(s) 583, 712
BseMI GCAATG 2 cut(s) 622, 759
BseMII CTCAG 2 cut(s) 178, 791
BseXI GCAGC 1 cut(s) 787
Bsh1236I CGCG 4 cut(s) 37, 54, 98, 367
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 599
BshTI ACCGGT 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 3 cut(s) 213, 588, 663
BsmAI GTCTC 2 cut(s) 23, 341
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 341
Bsp68I TCGCGA 1 cut(s) 367
BspACI CCGC 5 cut(s) 54, 613, 677, 686, 735
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 177, 790
BspFNI CGCG 4 cut(s) 37, 54, 98, 367
BspLI GGNNCC 2 cut(s) 7, 601
BspT107I GGYRCC 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 2 cut(s) 622, 759
BsrFI RCCGGY 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 662
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst4CI ACNGT 3 cut(s) 103, 431, 755
Bst6I CTCTTC 1 cut(s) 585
BstAPI GCANNNNNTGC 2 cut(s) 621, 788
BstC8I GCNNGC 3 cut(s) 469, 507, 522
BstDEI CTNAG 2 cut(s) 164, 777
BstF5I GGATG 2 cut(s) 583, 712
BstFNI CGCG 4 cut(s) 37, 54, 98, 367
BstHHI GCGC 4 cut(s) 26, 37, 54, 98
BstMAI GTCTC 2 cut(s) 23, 341
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 5 cut(s) 32, 538, 621, 788, 797
BstNSI RCATGY 2 cut(s) 524, 699
BstSCI CCNGG 1 cut(s) 586
BstUI CGCG 4 cut(s) 37, 54, 98, 367
BstV1I GCAGC 1 cut(s) 787
BstV2I GAAGAC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 583, 712
BtsIMutI CAGTG 1 cut(s) 638
BtuMI TCGCGA 1 cut(s) 367
Cac8I GCNNGC 3 cut(s) 469, 507, 522
CfoI GCGC 4 cut(s) 26, 37, 54, 98
Cfr10I RCCGGY 1 cut(s) 662
Csp6I GTAC 1 cut(s) 360
CspAI ACCGGT 1 cut(s) 662
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 5 cut(s) 62, 85, 352, 521, 696
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 164, 777
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 438
FaeI CATG 5 cut(s) 65, 88, 355, 524, 699
FatI CATG 5 cut(s) 61, 84, 351, 520, 695
FauI CCCGC 1 cut(s) 620
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 3 cut(s) 687, 736, 801
FokI GGATG 2 cut(s) 570, 699
Fsp4HI GCNGC 3 cut(s) 687, 736, 801
GlaI GCGC 4 cut(s) 25, 36, 53, 97
GluI GCNGC 3 cut(s) 687, 736, 801
HaeIII GGCC 1 cut(s) 216
HapII CCGG 3 cut(s) 213, 588, 663
HhaI GCGC 4 cut(s) 26, 37, 54, 98
Hin1II CATG 5 cut(s) 65, 88, 355, 524, 699
Hin6I GCGC 4 cut(s) 24, 35, 52, 96
HinP1I GCGC 4 cut(s) 24, 35, 52, 96
HindIII AAGCTT 2 cut(s) 269, 503
HinfI GANTC 1 cut(s) 89
HpaII CCGG 3 cut(s) 213, 588, 663
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 2 cut(s) 132, 199
Hpy188III TCNNGA 2 cut(s) 278, 366
Hpy8I GTNNAC 1 cut(s) 751
HpyAV CCTTC 4 cut(s) 227, 428, 541, 548
HpyCH4III ACNGT 3 cut(s) 103, 431, 755
HpyCH4IV ACGT 2 cut(s) 513, 645
HpyCH4V TGCA 7 cut(s) 194, 245, 302, 494, 520, 791, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 538, 621, 788, 797
HpyF3I CTNAG 2 cut(s) 164, 777
HpySE526I ACGT 2 cut(s) 513, 645
Hsp92II CATG 5 cut(s) 65, 88, 355, 524, 699
HspAI GCGC 4 cut(s) 24, 35, 52, 96
LmnI GCTCC 2 cut(s) 5, 590
Lsp1109I GCAGC 1 cut(s) 787
LweI GCATC 3 cut(s) 185, 203, 778
MaeII ACGT 2 cut(s) 513, 645
MaeIII GTNAC 1 cut(s) 755
MboII GAAGA 4 cut(s) 50, 317, 563, 572
MfeI CAATTG 1 cut(s) 594
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 4 cut(s) 19, 173, 220, 376
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 3 cut(s) 120, 237, 456
MslI CAYNNNNRTG 2 cut(s) 420, 525
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 3 cut(s) 213, 588, 663
MspR9I CCNGG 1 cut(s) 588
MunI CAATTG 1 cut(s) 594
MvnI CGCG 4 cut(s) 37, 54, 98, 367
MwoI GCNNNNNNNGC 5 cut(s) 32, 538, 621, 788, 797
NciI CCSGG 1 cut(s) 588
NlaIII CATG 5 cut(s) 65, 88, 355, 524, 699
NlaIV GGNNCC 2 cut(s) 7, 601
NruI TCGCGA 1 cut(s) 367
NspI RCATGY 2 cut(s) 524, 699
PaeI GCATGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 586
PinAI ACCGGT 1 cut(s) 662
PkrI GCNGC 3 cut(s) 688, 737, 802
PshBI ATTAAT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 7, 601
PvuII CAGCTG 1 cut(s) 467
RruI TCGCGA 1 cut(s) 367
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 2 cut(s) 420, 525
SaqAI TTAA 3 cut(s) 120, 237, 456
SatI GCNGC 3 cut(s) 687, 736, 801
ScrFI CCNGG 1 cut(s) 588
SetI ASST 9 cut(s) 165, 170, 273, 469, 507, 516, 534, 648, 776
SfaNI GCATC 3 cut(s) 185, 203, 778
SmiMI CAYNNNNRTG 2 cut(s) 420, 525
SmlI CTYRAG 2 cut(s) 10, 276
SmoI CTYRAG 2 cut(s) 10, 276
SphI GCATGC 1 cut(s) 524
SsiI CCGC 5 cut(s) 54, 613, 677, 686, 735
StyD4I CCNGG 1 cut(s) 586
TaaI ACNGT 3 cut(s) 103, 431, 755
TaiI ACGT 2 cut(s) 516, 648
TatI WGTACW 1 cut(s) 359
TauI GCSGC 2 cut(s) 689, 738
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 120, 237, 456
Tru9I TTAA 3 cut(s) 120, 237, 456
TscAI CASTG 1 cut(s) 638
TseI GCWGC 1 cut(s) 800
TspDTI ATGAA 6 cut(s) 50, 368, 404, 560, 572, 701
TspRI CASTG 1 cut(s) 638
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 3 cut(s) 126, 187, 438
XceI RCATGY 2 cut(s) 524, 699
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.