MD14G1106800.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000238
Physical Location & Seq
Forward (+)
16686670 .. 16687972
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1106800.v1.1.491

Sequence Viewer

Length: 534 bp
ATGGGTGGGATATTTAGCAAGAAAGGAGCATCTGGGTTCTCCTTGTGGTCGACAGCTGAGCAAGTTACTGAAGGGATTAATGGAACTGGTCTAACTGCCATTGTTACAGGAGGCTCAAGTGGTATTGGGGCGAAGACATGTCGCGTTCTTACACTGTGCGGTGTCCATGTAGTTATGGCAGTAAGGAACACTGCAGCTGGGGAAAGCGTTAAAGAAACGATACTTGAAGAAATCCCTGGTCATTTTCTTCTCACCAAACTTCTGTTAAAGACCATGAAAAGCACGTCAGGAGAAAGCAAAATAGAGGGGAGAATTGTTAATGTATCATCGTCACTTCATCCAGATGGGTACCGCAAAGGGATTCATTTTGATAAAATTAATGATGAAGCGGGATACAACAGATATTATGCCTATGCACAATCCAAGCTTGCTAACTTGTTACATACTAATGAACTTACAAGGCGTCTCAAGGTATTAAACATTTTAAGTCATCCAATGCAAATCTGCAGTAATTCTTGGACGTTGACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

178

Amino Acids

19.17

Weight (kDa)

9.32

Isoelectric Point (pI)

20.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 76 7.1e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 159, 352, 389
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 1 cut(s) 227
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 3 cut(s) 56, 197, 427
AluI AGCT 3 cut(s) 56, 197, 427
Alw26I GTCTC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 194
AseI ATTAAT 2 cut(s) 78, 378
Asp718I GGTACC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 244
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 470
BfmI CTRYAG 2 cut(s) 192, 505
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 140
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 100, 452
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 337, 490
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 470
BsmBI CGTCTC 1 cut(s) 470
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 3 cut(s) 159, 352, 389
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 350
BspMAI CTGCAG 2 cut(s) 196, 509
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 337, 490
BstFNI CGCG 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 470
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 2 cut(s) 192, 505
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 140
BsuI GTATCC 1 cut(s) 386
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 2 cut(s) 337, 490
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 152, 189
Cac8I GCNNGC 1 cut(s) 429
CseI GACGC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 138, 167, 274
CviJI RGCY 4 cut(s) 56, 114, 197, 427
CviKI_1 RGCY 4 cut(s) 56, 114, 197, 427
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 3 cut(s) 141, 170, 277
FaiI YATR 7 cut(s) 139, 168, 176, 275, 408, 414, 444
FatI CATG 3 cut(s) 137, 166, 273
FauI CCCGC 1 cut(s) 382
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 324, 477
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 201
HgaI GACGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 3 cut(s) 141, 170, 277
HincII GTYRAC 2 cut(s) 51, 525
HindII GTYRAC 2 cut(s) 51, 525
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 1 cut(s) 361
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 51, 525
Hpy188III TCNNGA 2 cut(s) 288, 341
Hpy8I GTNNAC 2 cut(s) 51, 525
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 2 cut(s) 284, 521
HpyCH4V TGCA 4 cut(s) 194, 416, 499, 507
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 284, 521
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 3 cut(s) 141, 170, 277
KpnI GGTACC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 8 cut(s) 18, 72, 93, 183, 222, 249, 273, 354
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 38
MaeII ACGT 2 cut(s) 284, 521
MaeIII GTNAC 4 cut(s) 64, 103, 330, 438
MboII GAAGA 3 cut(s) 145, 239, 239
MluCI AATT 3 cut(s) 312, 375, 511
MnlI CCTC 2 cut(s) 104, 298
MseI TTAA 7 cut(s) 78, 210, 266, 318, 378, 476, 485
MslI CAYNNNNRTG 2 cut(s) 342, 447
MspA1I CMGCKG 2 cut(s) 56, 197
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 144
NlaIII CATG 3 cut(s) 141, 170, 277
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 330
NspI RCATGY 1 cut(s) 141
PciI ACATGT 1 cut(s) 137
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 196
PscI ACATGT 1 cut(s) 137
PshBI ATTAAT 2 cut(s) 78, 378
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 350
PstI CTGCAG 2 cut(s) 196, 509
PvuII CAGCTG 2 cut(s) 56, 197
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 342, 447
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 7 cut(s) 78, 210, 266, 318, 378, 476, 485
SatI GCNGC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 237
SetI ASST 6 cut(s) 58, 199, 287, 429, 474, 524
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 2 cut(s) 192, 505
SmiMI CAYNNNNRTG 2 cut(s) 342, 447
SmlI CTYRAG 2 cut(s) 115, 467
SmoI CTYRAG 2 cut(s) 115, 467
Sse9I AATT 3 cut(s) 312, 375, 511
SsiI CCGC 3 cut(s) 159, 352, 389
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 2 cut(s) 287, 524
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 312, 375, 511
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 7 cut(s) 78, 210, 266, 318, 378, 476, 485
Tru9I TTAA 7 cut(s) 78, 210, 266, 318, 378, 476, 485
TscAI CASTG 2 cut(s) 159, 196
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 5 cut(s) 290, 326, 353, 399, 465
TspRI CASTG 2 cut(s) 159, 196
VspI ATTAAT 2 cut(s) 78, 378
XceI RCATGY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.