pycom01g21490

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000238
Physical Location & Seq
Forward (+)
19498577 .. 19500882
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g21490.1

Sequence Viewer

Length: 936 bp
ATGTGGTTCTTTAGAGGAAAAGGGCCATCCGGGTTCTCGTCGTCTTCCACAGCAGAAGAAGTTACTCAAGGGATTGATGCCACAGGTCTCACCGCCATTGTTACAGCGAGTGGTATTGGCACCGAAACTGCACGCGTTCTTGCACTGCGTGGTGCCCATGTGGTTATGGCAGTGAGGAATGTGGCTGCCGGTAAAGATGTAAGAGAAGCAATAGTGAAGCAAATTCCCACTGCCAAAGTTGATACCATGGAAATGGATCTCAGTTCCTTATCATCCGTGAGAAAATTCGCATCGGATTTCAATTCCTCCGGGCTTCCTCTCAACATCCTAATTAACAATGCAGGAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTTCAGTTCGCGACAAACCACGCAGGTCATTTTCTTTTGACAAACCTTTTGTTGGATACTATGAAGAAAACAGCACGCAAAAGCAGCAAACAAGGGAGAATTGTAAATGTGTCCTCAGAAGCTCACCGCTTTCCATATCCTGAAGGAATTCGTTTTGATAAGATTAACGACCAAGCAGGGTACAGAAGTTATCTTGCATACGGCCAATCAAAGCTTGCTAATATTTTGCATGCTAACGAGCTTGCAAGACGTTTAAAGGAACAAGGGGCAGATATAACAGCAAACTCACTTCACCCTGGTGTAATTGCTACCAATCTTTTCCGTTATAACAGCGCTATTAACGGGCTTGTTAACGTGCTTGGTAGAGTTTTGCTTAAAAATGTTCAGCAGGGAGCAGCAACGACATGCTACCTGGCACTGCATCCGCAAGTCAAGGGGGTGACCGGCAAATATTTTGCCGATAGTAACCTATCCAAGACAACTCCACAAGGGCAAGATGTGGAGATGGGAAAGAAGCTATGGGATTTCACCATGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

312

Amino Acids

33.71

Weight (kDa)

9.68

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 35 - 178 4.4e-23 short chain dehydrogenase
adh_short_C2 PF13561 36 - 279 6.9e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
Acc36I ACCTGC 1 cut(s) 401
AccB1I GGYRCC 2 cut(s) 119, 152
AccII CGCG 2 cut(s) 135, 398
AciI CCGC 3 cut(s) 93, 514, 812
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 3 cut(s) 222, 284, 534
AcuI CTGAAG 2 cut(s) 374, 549
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 1 cut(s) 569
AfeI AGCGCT 1 cut(s) 721
AfiI CCNNNNNNNGG 1 cut(s) 439
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 2 cut(s) 682, 798
AleI CACNNNNGTG 1 cut(s) 684
AluBI AGCT 4 cut(s) 509, 601, 628, 904
AluI AGCT 4 cut(s) 509, 601, 628, 904
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 721
AoxI GGCC 2 cut(s) 23, 589
ApeKI GCWGC 3 cut(s) 185, 471, 782
ApoI RAATTY 3 cut(s) 222, 284, 534
ArsI GACNNNNNNTTYG 2 cut(s) 418, 450
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 2 cut(s) 31, 310
AsuHPI GGTGA 5 cut(s) 82, 503, 671, 838, 907
BaeGI GKGCMC 1 cut(s) 157
BaeI ACNNNNGTAYC 2 cut(s) 559, 592
BanI GGYRCC 2 cut(s) 119, 152
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 172, 483, 794
BccI CCATC 2 cut(s) 34, 886
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 2 cut(s) 684, 800
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 2 cut(s) 31, 310
BcoDI GTCTC 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 723
BfuAI ACCTGC 1 cut(s) 401
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 3 cut(s) 186, 472, 783
BlsI GCNGC 3 cut(s) 187, 473, 784
Bme1390I CCNGG 4 cut(s) 31, 310, 684, 800
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 121, 154
BmrFI CCNGG 4 cut(s) 31, 310, 684, 800
BmsI GCATC 3 cut(s) 67, 299, 817
BpiI GAAGAC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 31, 310
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 246, 682, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse118I RCCGGY 2 cut(s) 188, 830
BseBI CCWGG 2 cut(s) 684, 800
BseDI CCNNGG 3 cut(s) 246, 682, 918
BseGI GGATG 4 cut(s) 26, 272, 324, 808
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 274, 516
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 3 cut(s) 172, 483, 794
BsgI GTGCAG 1 cut(s) 114
Bsh1236I CGCG 2 cut(s) 135, 398
BshFI GGCC 2 cut(s) 25, 591
BshNI GGYRCC 2 cut(s) 119, 152
BsiSI CCGG 4 cut(s) 30, 189, 309, 831
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 25, 591
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 256
Bsp19I CCATGG 2 cut(s) 246, 918
Bsp68I TCGCGA 1 cut(s) 398
BspACI CCGC 3 cut(s) 93, 514, 812
BspANI GGCC 2 cut(s) 25, 591
BspCNI CTCAG 2 cut(s) 273, 515
BspFNI CGCG 2 cut(s) 135, 398
BspLI GGNNCC 2 cut(s) 121, 154
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 2 cut(s) 119, 152
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 188, 830
BssAI RCCGGY 2 cut(s) 188, 830
BssECI CCNNGG 3 cut(s) 246, 682, 918
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 2 cut(s) 246, 918
Bst2UI CCWGG 2 cut(s) 684, 800
BstC8I GCNNGC 5 cut(s) 133, 463, 603, 618, 630
BstDEI CTNAG 3 cut(s) 260, 372, 502
BstDSI CCRYGG 2 cut(s) 246, 918
BstEII GGTNACC 1 cut(s) 826
BstF5I GGATG 4 cut(s) 26, 272, 324, 808
BstFNI CGCG 2 cut(s) 135, 398
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 2 cut(s) 684, 800
BstNSI RCATGY 2 cut(s) 620, 795
BstPI GGTNACC 1 cut(s) 826
BstSCI CCNGG 4 cut(s) 29, 308, 682, 798
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 2 cut(s) 135, 398
BstV1I GCAGC 3 cut(s) 172, 483, 794
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 25, 591
BtgI CCRYGG 2 cut(s) 246, 918
BtsCI GGATG 4 cut(s) 26, 272, 324, 808
BtsI GCAGTG 4 cut(s) 143, 177, 228, 803
BtsIMutI CAGTG 4 cut(s) 143, 177, 228, 803
BtuMI TCGCGA 1 cut(s) 398
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 5 cut(s) 133, 463, 603, 618, 630
CfoI GCGC 1 cut(s) 722
Cfr10I RCCGGY 2 cut(s) 188, 830
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 568
CviAII CATG 5 cut(s) 158, 247, 617, 792, 919
CviJI RGCY 9 cut(s) 25, 185, 313, 509, 591, 601, 628, 733, 904
CviKI_1 RGCY 9 cut(s) 25, 185, 313, 509, 591, 601, 628, 733, 904
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 3 cut(s) 260, 372, 502
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraI TTTAAA 1 cut(s) 642
DraIII CACNNNGTG 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 246, 918
Eco31I GGTCTC 1 cut(s) 92
Eco47III AGCGCT 1 cut(s) 721
Eco57I CTGAAG 2 cut(s) 374, 549
Eco91I GGTNACC 1 cut(s) 826
EcoO65I GGTNACC 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 682, 798
EcoT14I CCWWGG 2 cut(s) 246, 918
ErhI CCWWGG 2 cut(s) 246, 918
FaeI CATG 5 cut(s) 161, 250, 620, 795, 922
FatI CATG 5 cut(s) 157, 246, 616, 791, 918
Fnu4HI GCNGC 3 cut(s) 186, 472, 783
FokI GGATG 4 cut(s) 13, 259, 311, 795
Fsp4HI GCNGC 3 cut(s) 186, 472, 783
GlaI GCGC 1 cut(s) 721
GluI GCNGC 3 cut(s) 186, 472, 783
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 2 cut(s) 25, 591
HapII CCGG 4 cut(s) 30, 189, 309, 831
HhaI GCGC 1 cut(s) 722
Hin1II CATG 5 cut(s) 161, 250, 620, 795, 922
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 599
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 4 cut(s) 30, 189, 309, 831
HphI GGTGA 5 cut(s) 82, 503, 671, 838, 907
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 2 cut(s) 295, 505
Hpy188III TCNNGA 2 cut(s) 397, 527
Hpy8I GTNNAC 1 cut(s) 739
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 637, 741
HpyCH4V TGCA 7 cut(s) 131, 143, 341, 584, 616, 632, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 3 cut(s) 260, 372, 502
HpySE526I ACGT 2 cut(s) 637, 741
Hsp92II CATG 5 cut(s) 161, 250, 620, 795, 922
HspAI GCGC 1 cut(s) 720
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 779
Lsp1109I GCAGC 3 cut(s) 172, 483, 794
LweI GCATC 3 cut(s) 67, 299, 817
MaeII ACGT 2 cut(s) 637, 741
MaeIII GTNAC 4 cut(s) 61, 100, 826, 851
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 36, 68, 463
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 7 cut(s) 222, 284, 301, 330, 486, 534, 690
MluI ACGCGT 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 5 cut(s) 8, 168, 316, 327, 511
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 6 cut(s) 333, 552, 641, 726, 738, 762
MslI CAYNNNNRTG 2 cut(s) 251, 684
MspI CCGG 4 cut(s) 30, 189, 309, 831
MspR9I CCNGG 4 cut(s) 31, 310, 684, 800
MvaI CCWGG 2 cut(s) 684, 800
MvnI CGCG 2 cut(s) 135, 398
MwoI GCNNNNNNNGC 1 cut(s) 471
NciI CCSGG 2 cut(s) 31, 310
NcoI CCATGG 2 cut(s) 246, 918
NdeII GATC 1 cut(s) 256
NlaIII CATG 5 cut(s) 161, 250, 620, 795, 922
NlaIV GGNNCC 2 cut(s) 121, 154
NmuCI GTSAC 1 cut(s) 826
NruI TCGCGA 1 cut(s) 398
NspI RCATGY 2 cut(s) 620, 795
OliI CACNNNNGTG 1 cut(s) 684
PaeI GCATGC 1 cut(s) 620
PdmI GAANNNNTTC 1 cut(s) 534
PkrI GCNGC 3 cut(s) 187, 473, 784
PsiI TTATAA 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 682, 798
PspEI GGTNACC 1 cut(s) 826
PspGI CCWGG 2 cut(s) 682, 798
PspN4I GGNNCC 2 cut(s) 121, 154
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 256
RruI TCGCGA 1 cut(s) 398
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 251, 684
SaqAI TTAA 6 cut(s) 333, 552, 641, 726, 738, 762
SatI GCNGC 3 cut(s) 186, 472, 783
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 4 cut(s) 31, 310, 684, 800
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 3 cut(s) 67, 299, 817
SmiMI CAYNNNNRTG 2 cut(s) 251, 684
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 620
Sse9I AATT 7 cut(s) 222, 284, 301, 330, 486, 534, 690
SsiI CCGC 3 cut(s) 93, 514, 812
SspI AATATT 2 cut(s) 610, 839
StyD4I CCNGG 4 cut(s) 29, 308, 682, 798
StyI CCWWGG 2 cut(s) 246, 918
TaiI ACGT 2 cut(s) 640, 744
TaqI TCGA 1 cut(s) 384
TasI AATT 7 cut(s) 222, 284, 301, 330, 486, 534, 690
Tru1I TTAA 6 cut(s) 333, 552, 641, 726, 738, 762
Tru9I TTAA 6 cut(s) 333, 552, 641, 726, 738, 762
TscAI CASTG 4 cut(s) 150, 177, 235, 810
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 3 cut(s) 185, 471, 782
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 2 cut(s) 265, 698
TspRI CASTG 4 cut(s) 150, 177, 235, 810
XapI RAATTY 3 cut(s) 222, 284, 534
XceI RCATGY 2 cut(s) 620, 795
XmnI GAANNNNTTC 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.