Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017623.1

Orthogroup ID

OG0000238

Physical Location & Seq

Genomic Coordinates Forward (+)

11557 .. 12340

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017623.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggggatattatttagcaagaaaggaccatctggattttctgctttttcgacagcagaggaggttactcatgggattgatggaactggtcttactgccgtagtcacaggagcttcaagtggtattggcgtagtgacagcacatgtccttgctttgcgtggtgtccatgtagtaatggcagtcaggaacattgatgctgggaataatgttaaagaagcaatacttaaggacattcccactgctaaaattgatatcatggaattagacctcagctctttagcatctgtaacaaaatttgcagcggactataattctaaaggccttccactgaacatccttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

114

Amino Acids

11.73

Weight (kDa)

6.25

Isoelectric Point (pI)

20.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca	FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica	MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica	Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis	pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis	RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata	RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora	Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa	Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha	Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana	Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	293
AflII	CTTAAG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	117
AluBI	AGCT	2 cut(s)	113, 273
AluI	AGCT	2 cut(s)	113, 273
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	2 cut(s)	37, 74
BceAI	ACGGC	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmsI	GCATC	2 cut(s)	184, 290
Bpu10I	CCTNAGC	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	311
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	91
BstAFI	CTTAAG	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 326
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	4 cut(s)	71, 143, 167, 256
CviJI	RGCY	3 cut(s)	113, 273, 321
CviKI_1	RGCY	3 cut(s)	113, 273, 321
DdeI	CTNAG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	26
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	4 cut(s)	74, 146, 170, 259
FaiI	YATR	6 cut(s)	72, 144, 168, 257, 309, 341
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	70, 142, 166, 255
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	74, 146, 170, 259
Hpy188III	TCNNGA	2 cut(s)	33, 184
HpyAV	CCTTC	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	74, 146, 170, 259
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	5 cut(s)	18, 72, 93, 169, 183
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	184, 290
MaeIII	GTNAC	4 cut(s)	64, 103, 133, 286
MluCI	AATT	4 cut(s)	246, 260, 293, 310
MnlI	CCTC	3 cut(s)	52, 55, 278
MseI	TTAA	2 cut(s)	210, 225
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	224
NlaIII	CATG	4 cut(s)	74, 146, 170, 259
NmuCI	GTSAC	2 cut(s)	103, 133
NspI	RCATGY	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	321
PciI	ACATGT	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	301
PscI	ACATGT	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	26
PsrI	GAACNNNNNNTAC	2 cut(s)	76, 108
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	210, 225
SatI	GCNGC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	26
SetI	ASST	4 cut(s)	66, 115, 270, 275
SfaNI	GCATC	2 cut(s)	184, 290
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	246, 260, 293, 310
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	50
TasI	AATT	4 cut(s)	246, 260, 293, 310
Tru1I	TTAA	2 cut(s)	210, 225
Tru9I	TTAA	2 cut(s)	210, 225
TscAI	CASTG	2 cut(s)	244, 333
TseFI	GTSAC	2 cut(s)	103, 133
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	103, 133
TspRI	CASTG	2 cut(s)	244, 333
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.