Rorug07G0036100

Short-chain dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
2544367 .. 2545428
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0036100.1

Sequence Viewer

Length: 279 bp
ATGTCTAGCCGAAGGTCAAGATCTAGGCAATCTGGTGGATCGAGAATCTCGGATGATCAAATTAATGATCTCGTCACAAAGTTGCAGCAGCTTCTTCCTGAGATTCGCAACAGTAGACGTTCTGACAAGGTTTCAGCATCGACGGTGCTACAGGAAACGTGCAACTATATAAGAAACTTGCACAGAGAGGTGGATGACCTAAGCGAGCGACTGTCGGAGCTGTTGGCAACAACTGACACTGCCCAAGCTGCCGTAATCAGGAGCTTACTTTTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

9.17

Isoelectric Point (pI)

87.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 17 - 90 2.5e-33 ILI bHLH domain
HLH PF00010 19 - 60 1.8e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AclWI GGATC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 91, 220, 248, 264
AluI AGCT 4 cut(s) 91, 220, 248, 264
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 85, 88, 248
AseI ATTAAT 1 cut(s) 63
BbvI GCAGC 3 cut(s) 97, 100, 235
BceAI ACGGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 55
BfaI CTAG 2 cut(s) 6, 24
BfmI CTRYAG 1 cut(s) 149
BglII AGATCT 1 cut(s) 20
BisI GCNGC 3 cut(s) 86, 89, 249
BlsI GCNGC 3 cut(s) 87, 90, 250
BmsI GCATC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 58, 199
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 90
BseXI GCAGC 3 cut(s) 97, 100, 235
BslI CCNNNNNNNGG 1 cut(s) 258
Bsp143I GATC 4 cut(s) 20, 38, 55, 67
BspCNI CTCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 46
BssMI GATC 4 cut(s) 20, 38, 55, 67
Bst4CI ACNGT 3 cut(s) 113, 145, 213
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 99, 200
BstF5I GGATG 2 cut(s) 58, 199
BstKTI GATC 4 cut(s) 23, 41, 58, 70
BstMBI GATC 4 cut(s) 20, 38, 55, 67
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 97, 100, 235
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtsCI GGATG 2 cut(s) 58, 199
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 206
CviJI RGCY 5 cut(s) 9, 91, 220, 248, 264
CviKI_1 RGCY 5 cut(s) 9, 91, 220, 248, 264
DdeI CTNAG 2 cut(s) 99, 200
DpnI GATC 4 cut(s) 22, 40, 57, 69
DpnII GATC 4 cut(s) 20, 38, 55, 67
FaiI YATR 2 cut(s) 168, 170
FbaI TGATCA 1 cut(s) 55
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 86, 89, 249
FokI GGATG 2 cut(s) 65, 206
Fsp4HI GCNGC 3 cut(s) 86, 89, 249
FspBI CTAG 2 cut(s) 6, 24
GluI GCNGC 3 cut(s) 86, 89, 249
HinfI GANTC 2 cut(s) 45, 103
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 52, 124, 217
Hpy188III TCNNGA 4 cut(s) 18, 42, 98, 259
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 3 cut(s) 113, 145, 213
HpyCH4IV ACGT 2 cut(s) 118, 158
HpyCH4V TGCA 4 cut(s) 85, 162, 181, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 99, 200
HpySE526I ACGT 2 cut(s) 118, 158
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 4 cut(s) 20, 38, 55, 67
LmnI GCTCC 2 cut(s) 217, 261
LpnPI CCDG 4 cut(s) 18, 111, 137, 244
Lsp1109I GCAGC 3 cut(s) 97, 100, 235
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 6, 24
MaeII ACGT 2 cut(s) 118, 158
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 22, 40, 57, 69
MboI GATC 4 cut(s) 20, 38, 55, 67
MboII GAAGA 1 cut(s) 86
MflI RGATCY 1 cut(s) 20
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 181
MseI TTAA 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 4 cut(s) 20, 38, 55, 67
NmuCI GTSAC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 45, 103
PkrI GCNGC 3 cut(s) 87, 90, 250
PshBI ATTAAT 1 cut(s) 63
PsuI RGATCY 1 cut(s) 20
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 3 cut(s) 86, 89, 249
Sau3AI GATC 4 cut(s) 20, 38, 55, 67
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 60
SspMI CTAG 2 cut(s) 6, 24
TaaI ACNGT 3 cut(s) 113, 145, 213
TaiI ACGT 2 cut(s) 121, 161
TaqI TCGA 2 cut(s) 41, 140
TasI AATT 1 cut(s) 60
TfiI GAWTC 2 cut(s) 45, 103
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 3 cut(s) 85, 88, 248
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 244
VspI ATTAAT 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 2 cut(s) 6, 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.