RchiOBHm_Chr7g0197291

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000238
Physical Location & Seq
Reverse (-)
15275047 .. 15277307
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17649

Sequence Viewer

Length: 891 bp
ATGGGGATATTATTTAGCAAGAAAGGACCATCTGGATTTTCTGCTTTTTCGACAGCAGAGGAGGTTACTCATGGGATTGATGGAACTGGTCTTACTGCCGTAGTCACAGGAGCTTCAAGTGGTATTGGCGTAGTGACAGCACATGTCCTTGCTTTGCGTGGTGTCCATGTAGTAATGGCAGTCAGGAACATTGATGCTGGGAATAATGTTAAAGAAGCAATACTTAAGGACATTCCCACTGCTAAAATTGATATCATGGAATTAGACCTCAGCTCTTTAGCATCTGTAACAAAATTTGCAGCGGACTATAATTCTAAAGGCCTTCCACTGAACATCCTTATTAACAATGCAGGGGTTATGGCAACTCCATTCAAGCTTTCTCAAGATAACATAGAACTTCAGTTTGCTACGAACCATTTAGGTCATTTTCTCCTCACAAATCTTCTCTTGGAGACAATGAAACACACATCGCGAGAGAGCAGAATAGAAGGAAGAGTTGTTAATGTAGCATCTTTAGGCCATAAATTTGGGTATCCGGAAGGAATTGTTTTCGATGAAATCAATGATGAATCAAGGTACAACAAATATCGTGCATATAACCAATCCAAGCTTGCTAACATATTACATGCTAATGAGCTTGCAAGGCGTTTAAAGGAAGAAGGTGTGGAGATAACTGCTAATTCTCTTCATCCCGGAGATATTTACACAAATCTTTTACGCAATGGAGCGGCGACAACATGCTTTGTGTCACTTCATCCACAAGTAAAGGGAGTAAGCGGGGAATACTTTTCAGGGTGCAACATCACCAAACCGAGCTCTCAGGCAAAAGATGGAGATGTGACCAAGAAACTCTGGGAATTTAGCTTGAGTTTGACCGATCGAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

296

Amino Acids

32.09

Weight (kDa)

7.16

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 183 2.2e-24 short chain dehydrogenase
adh_short_C2 PF13561 37 - 240 2.7e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 728
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 3 cut(s) 302, 728, 777
AcsI RAATTY 3 cut(s) 293, 524, 857
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 2 cut(s) 578, 887
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 2 cut(s) 117, 373
AluBI AGCT 7 cut(s) 113, 273, 376, 610, 637, 816, 864
AluI AGCT 7 cut(s) 113, 273, 376, 610, 637, 816, 864
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 1 cut(s) 446
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 2 cut(s) 319, 517
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 3 cut(s) 293, 524, 857
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 796
AvaII GGWCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 818
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 311
BccI CCATC 3 cut(s) 37, 74, 824
BceAI ACGGC 1 cut(s) 83
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 446
BfrI CTTAAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 2 cut(s) 300, 729
BlsI GCNGC 2 cut(s) 301, 730
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 184, 290, 518
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 366, 886
BpuMI CCSGG 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 727
BseAI TCCGGA 1 cut(s) 535
BseGI GGATG 3 cut(s) 333, 688, 754
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 2 cut(s) 283, 833
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 74, 422
BseXI GCAGC 1 cut(s) 311
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 472
Bsh1285I CGRYCG 1 cut(s) 880
BshFI GGCC 2 cut(s) 321, 519
BsiEI CGRYCG 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 818
BsiSI CCGG 2 cut(s) 536, 693
BsmAI GTCTC 1 cut(s) 446
BsnI GGCC 2 cut(s) 321, 519
Bsp1286I GDGCHC 1 cut(s) 818
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 1 cut(s) 877
Bsp68I TCGCGA 1 cut(s) 472
BspACI CCGC 3 cut(s) 302, 728, 777
BspANI GGCC 2 cut(s) 321, 519
BspCNI CTCAG 2 cut(s) 282, 832
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 472
BspTI CTTAAG 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 877
Bst6I CTCTTC 2 cut(s) 487, 690
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 612, 639
BstDEI CTNAG 2 cut(s) 269, 819
BstF5I GGATG 3 cut(s) 333, 688, 754
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 1 cut(s) 880
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 1 cut(s) 877
BstMCI CGRYCG 1 cut(s) 880
BstMWI GCNNNNNNNGC 1 cut(s) 643
BstNSI RCATGY 3 cut(s) 146, 629, 741
BstSCI CCNGG 1 cut(s) 691
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 2 cut(s) 321, 519
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 333, 688, 754
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 326
BtuMI TCGCGA 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 612, 639
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 577, 886
CviAII CATG 6 cut(s) 71, 143, 167, 256, 626, 738
CviJI RGCY 9 cut(s) 113, 273, 321, 376, 519, 610, 637, 816, 864
CviKI_1 RGCY 9 cut(s) 113, 273, 321, 376, 519, 610, 637, 816, 864
CviQI GTAC 2 cut(s) 577, 886
DdeI CTNAG 2 cut(s) 269, 819
DpnI GATC 1 cut(s) 879
DpnII GATC 1 cut(s) 877
DraI TTTAAA 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 487, 690
EarI CTCTTC 2 cut(s) 487, 690
Ecl136II GAGCTC 1 cut(s) 816
Eco147I AGGCCT 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 816
Eco57I CTGAAG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 816
EcoRV GATATC 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 818
FaeI CATG 6 cut(s) 74, 146, 170, 259, 629, 741
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 6 cut(s) 70, 142, 166, 255, 625, 737
FauI CCCGC 1 cut(s) 770
Fnu4HI GCNGC 2 cut(s) 300, 729
FokI GGATG 3 cut(s) 320, 675, 741
FriOI GRGCYC 1 cut(s) 818
Fsp4HI GCNGC 2 cut(s) 300, 729
GluI GCNGC 2 cut(s) 300, 729
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 321, 519
HapII CCGG 2 cut(s) 536, 693
Hin1II CATG 6 cut(s) 74, 146, 170, 259, 629, 741
HindIII AAGCTT 2 cut(s) 374, 608
HinfI GANTC 1 cut(s) 569
HpaII CCGG 2 cut(s) 536, 693
HphI GGTGA 1 cut(s) 796
Hpy188III TCNNGA 5 cut(s) 33, 184, 383, 471, 536
HpyAV CCTTC 4 cut(s) 332, 482, 533, 653
HpyCH4V TGCA 5 cut(s) 299, 350, 593, 641, 798
HpyF10VI GCNNNNNNNGC 1 cut(s) 643
HpyF3I CTNAG 2 cut(s) 269, 819
Hsp92II CATG 6 cut(s) 74, 146, 170, 259, 629, 741
Kpn2I TCCGGA 1 cut(s) 535
Kzo9I GATC 1 cut(s) 877
LmnI GCTCC 2 cut(s) 110, 725
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 3 cut(s) 184, 290, 518
MaeIII GTNAC 6 cut(s) 64, 103, 133, 286, 747, 838
MalI GATC 1 cut(s) 879
MbiI CCGCTC 1 cut(s) 728
MboI GATC 1 cut(s) 877
MboII GAAGA 4 cut(s) 434, 504, 668, 677
MhlI GDGCHC 1 cut(s) 818
MluCI AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 857
MnlI CCTC 4 cut(s) 52, 55, 278, 443
MroI TCCGGA 1 cut(s) 535
MseI TTAA 5 cut(s) 210, 225, 342, 501, 650
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 2 cut(s) 536, 693
MspR9I CCNGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 643
NciI CCSGG 1 cut(s) 693
NdeII GATC 1 cut(s) 877
NlaIII CATG 6 cut(s) 74, 146, 170, 259, 629, 741
NmuCI GTSAC 4 cut(s) 103, 133, 747, 838
NruI TCGCGA 1 cut(s) 472
NspI RCATGY 3 cut(s) 146, 629, 741
PceI AGGCCT 1 cut(s) 321
PciI ACATGT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 2 cut(s) 301, 730
Ple19I CGATCG 1 cut(s) 880
PscI ACATGT 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PvuI CGATCG 1 cut(s) 880
RruI TCGCGA 1 cut(s) 472
RsaI GTAC 2 cut(s) 578, 887
RsaNI GTAC 2 cut(s) 577, 886
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 818
SaqAI TTAA 5 cut(s) 210, 225, 342, 501, 650
SatI GCNGC 2 cut(s) 300, 729
Sau3AI GATC 1 cut(s) 877
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 887
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 1 cut(s) 818
SfaNI GCATC 3 cut(s) 184, 290, 518
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 3 cut(s) 224, 381, 865
SmoI CTYRAG 3 cut(s) 224, 381, 865
Sse9I AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 857
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 3 cut(s) 302, 728, 777
SstI GAGCTC 1 cut(s) 818
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 691
TaqI TCGA 3 cut(s) 50, 552, 880
TaqII GACCGA 1 cut(s) 890
TasI AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 857
TatI WGTACW 1 cut(s) 885
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 5 cut(s) 210, 225, 342, 501, 650
Tru9I TTAA 5 cut(s) 210, 225, 342, 501, 650
TscAI CASTG 2 cut(s) 244, 333
TseFI GTSAC 4 cut(s) 103, 133, 747, 838
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 4 cut(s) 103, 133, 747, 838
TspDTI ATGAA 5 cut(s) 473, 570, 582, 677, 743
TspRI CASTG 2 cut(s) 244, 333
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 293, 524, 857
XceI RCATGY 3 cut(s) 146, 629, 741
ZrmI AGTACT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.