Rh7BG166700

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000238
Physical Location & Seq
Reverse (-)
12956292 .. 12957281
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG166700.1

Sequence Viewer

Length: 426 bp
ATGGGACTCTTTAGCAAGAAAGGGCCTTCTGGGTTTTCGTCAACTTCCACAGCAGAGGAAGTTACGCAAGGGATTGATGCAACTGGTCTTACTGTCATTGTTACAGGAGCCTCTAGTGGTATTGGCACGGAGACAACGGGTGTTCTTGTGTTGCGTGGTGCTCATGTGGTCATGGCAGTGAGGAACAAGGATGCTGGGATAAATGTCAAAGAAGCAATTCTCAAAGAAATTCCGGATGCTAAAATTGATGTCACGGAGTTAGATCTCAGCTCAATGGCATCTGTAAGAAAATTTGCAGAAGAGTATAATTCCAAAGGCCTTCCATTGAATATCCTTATTAACAATGCAGGGGTTATGGTAGATAAATTCAAGCTATCTCAAGACAACATAGAACTCAATTTTGCAACTAACCATTTAGTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

141

Amino Acids

14.86

Weight (kDa)

5.34

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 137 4.8e-17 short chain dehydrogenase
KR PF08659 31 - 124 3.4e-08 KR domain
adh_short_C2 PF13561 36 - 121 1.8e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 232
AcsI RAATTY 3 cut(s) 228, 290, 365
AgsI TTSAA 2 cut(s) 328, 370
AluBI AGCT 2 cut(s) 270, 373
AluI AGCT 2 cut(s) 270, 373
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 2 cut(s) 23, 316
ApoI RAATTY 3 cut(s) 228, 290, 365
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 4 cut(s) 67, 181, 226, 287
BpuEI CTTGAG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 232
BseGI GGATG 2 cut(s) 196, 241
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 2 cut(s) 25, 318
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 25, 318
Bsp1286I GDGCHC 1 cut(s) 163
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 2 cut(s) 25, 318
BspCNI CTCAG 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 88
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 196, 241
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 2 cut(s) 25, 318
BtsCI GGATG 2 cut(s) 196, 241
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 2 cut(s) 164, 172
CviJI RGCY 5 cut(s) 25, 110, 270, 318, 373
CviKI_1 RGCY 5 cut(s) 25, 110, 270, 318, 373
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 23
FaeI CATG 2 cut(s) 167, 175
FaiI YATR 5 cut(s) 165, 173, 306, 356, 389
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 163, 171
FokI GGATG 2 cut(s) 203, 248
FspBI CTAG 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 25, 318
HapII CCGG 1 cut(s) 233
Hin1II CATG 2 cut(s) 167, 175
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 6
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 233, 380
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 2 cut(s) 36, 329
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 80, 296, 347, 404
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 2 cut(s) 167, 175
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 6 cut(s) 15, 69, 90, 180, 246, 333
LweI GCATC 4 cut(s) 67, 181, 226, 287
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 61, 100, 250
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 7 cut(s) 216, 228, 243, 290, 307, 365, 397
MnlI CCTC 3 cut(s) 49, 121, 174
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 1 cut(s) 233
NdeII GATC 1 cut(s) 262
NlaIII CATG 2 cut(s) 167, 175
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 250
PceI AGGCCT 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 163
SetI ASST 2 cut(s) 272, 375
SfaNI GCATC 4 cut(s) 67, 181, 226, 287
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 7 cut(s) 216, 228, 243, 290, 307, 365, 397
SseBI AGGCCT 1 cut(s) 318
SspMI CTAG 1 cut(s) 114
StuI AGGCCT 1 cut(s) 318
TaaI ACNGT 1 cut(s) 94
TasI AATT 7 cut(s) 216, 228, 243, 290, 307, 365, 397
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 143, 269
TspRI CASTG 1 cut(s) 183
XapI RAATTY 3 cut(s) 228, 290, 365
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.