Rmu_co8456741.1_g000001

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8456741.1
OG0000238
Physical Location & Seq
Reverse (-)
1 .. 1532
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8456741.1_g000001.1.cds

Sequence Viewer

Length: 814 bp
atggggatttttggcaagaaagcagcatctggattctctgcctcttccacagcagaacaagttactcaaggaattgatggaactggtcttactgccattgttacaggagccacaaatggtattggcctagagacagcgcgtgttcttgcattgcgtggtgttcacgtagtaatggcagtaaggaacatggatgccggtaccaatgtcaaagaagcaatcctcaacgaaatcccggatgcaaaaattgatattatggagttagatctcagctcattggcatctgtcagaaaatttggagcagagtttgattccagaggccttcccttgaatatccttattaacaatgcaggggttatggcagataagttcaagctatcacaagacaacatagaactcaattttgcgaccaaccatttaggtcattttcttctcacaaatctgttgttggagaacatgaaacacacatcgagagaaagcggcatcgaggggagaattgttaatgtatcatctcttggccatacatatgtatacaacgaaggaattcgtttcgattgtttcaatgatgaatcgagatacaacaagtatgttgcatatggagaatcgaagctggctaatatactgcatgctaatgagcttacaacgctcttcaaggtattgaccttaagcttcaagtacatactagcttcttggttgaagaggtatcttattttcaaaatattgtctaaacaggaagaaggaattgagatgactgctaattctcttcatcctggagcaattcacacaaatattatacgcaatgatatgtttttaaagt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

271

Amino Acids

29.8

Weight (kDa)

6.72

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 139
AciI CCGC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 2 cut(s) 290, 540
AfaI GTAC 2 cut(s) 199, 674
AflII CTTAAG 1 cut(s) 661
AgsI TTSAA 7 cut(s) 328, 370, 559, 649, 670, 694, 712
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 6 cut(s) 270, 373, 607, 634, 666, 683
AluI AGCT 6 cut(s) 270, 373, 607, 634, 666, 683
Alw26I GTCTC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 3 cut(s) 124, 316, 514
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 290, 540
Asp700I GAANNNNTTC 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BalI TGGCCA 1 cut(s) 516
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 768
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 128, 680
BfrI CTTAAG 1 cut(s) 661
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 24, 478
BlsI GCNGC 2 cut(s) 25, 479
Bme1390I CCNGG 2 cut(s) 233, 768
BmiI GGNNCC 2 cut(s) 109, 199
BmrFI CCNGG 2 cut(s) 233, 768
BmsI GCATC 5 cut(s) 35, 181, 226, 287, 489
BpmI CTGGAG 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 2 cut(s) 149, 802
BseBI CCWGG 1 cut(s) 768
BseGI GGATG 3 cut(s) 196, 241, 763
BseMI GCAATG 2 cut(s) 149, 802
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 126, 318, 516
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 195, 233
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 3 cut(s) 126, 318, 516
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 477
BspANI GGCC 3 cut(s) 126, 318, 516
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 109, 199
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 661
BsrDI GCAATG 2 cut(s) 149, 802
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 194
BssMI GATC 1 cut(s) 262
BssNAI GTATAC 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 768
Bst6I CTCTTC 4 cut(s) 49, 650, 689, 765
BstAFI CTTAAG 1 cut(s) 661
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 609, 624
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 3 cut(s) 196, 241, 763
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 231, 766
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BstZ17I GTATAC 1 cut(s) 529
BsuRI GGCC 3 cut(s) 126, 318, 516
BtsCI GGATG 3 cut(s) 196, 241, 763
Cac8I GCNNGC 2 cut(s) 609, 624
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 2 cut(s) 198, 673
CviAII CATG 3 cut(s) 187, 454, 623
CviQI GTAC 2 cut(s) 198, 673
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 810
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 4 cut(s) 49, 650, 689, 765
EarI CTCTTC 4 cut(s) 49, 650, 689, 765
Eco147I AGGCCT 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 766
FaeI CATG 3 cut(s) 190, 457, 626
FatI CATG 3 cut(s) 186, 453, 622
FauNDI CATATG 2 cut(s) 523, 592
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 24, 478
FokI GGATG 3 cut(s) 203, 248, 750
Fsp4HI GCNGC 2 cut(s) 24, 478
FspBI CTAG 2 cut(s) 128, 680
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 24, 478
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 3 cut(s) 126, 318, 516
HapII CCGG 2 cut(s) 195, 233
HhaI GCGC 1 cut(s) 139
Hin1II CATG 3 cut(s) 190, 457, 626
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 664
HinfI GANTC 4 cut(s) 33, 308, 566, 599
HpaII CCGG 2 cut(s) 195, 233
Hpy166II GTNNAC 2 cut(s) 163, 529
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 4 cut(s) 30, 312, 468, 570
Hpy8I GTNNAC 2 cut(s) 163, 529
HpyAV CCTTC 3 cut(s) 329, 530, 728
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 149, 239, 347, 590, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 190, 457, 626
HspAI GCGC 1 cut(s) 137
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 3 cut(s) 107, 296, 770
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 5 cut(s) 35, 181, 226, 287, 489
MaeI CTAG 2 cut(s) 128, 680
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 6 cut(s) 36, 419, 637, 706, 743, 752
MflI RGATCY 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 9 cut(s) 72, 243, 290, 397, 492, 540, 738, 754, 774
MluNI TGGCCA 1 cut(s) 516
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 5 cut(s) 52, 230, 308, 478, 690
Mox20I TGGCCA 1 cut(s) 516
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 516
MseI TTAA 4 cut(s) 339, 498, 662, 809
MslI CAYNNNNRTG 2 cut(s) 522, 627
Msp20I TGGCCA 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 661
MspI CCGG 2 cut(s) 195, 233
MspR9I CCNGG 2 cut(s) 233, 768
MvaI CCWGG 1 cut(s) 768
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 640
NciI CCSGG 1 cut(s) 233
NdeI CATATG 2 cut(s) 523, 592
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 190, 457, 626
NlaIV GGNNCC 2 cut(s) 109, 199
NspI RCATGY 1 cut(s) 626
PaeI GCATGC 1 cut(s) 626
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 4 cut(s) 33, 308, 566, 599
PfoI TCCNGGA 2 cut(s) 231, 766
PkrI GCNGC 2 cut(s) 25, 479
Ppu21I YACGTR 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 766
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 2 cut(s) 109, 199
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 199, 674
RsaNI GTAC 2 cut(s) 198, 673
RseI CAYNNNNRTG 2 cut(s) 522, 627
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 4 cut(s) 339, 498, 662, 809
SatI GCNGC 2 cut(s) 24, 478
Sau3AI GATC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 233, 768
SfaNI GCATC 5 cut(s) 35, 181, 226, 287, 489
SmiMI CAYNNNNRTG 2 cut(s) 522, 627
SmlI CTYRAG 2 cut(s) 66, 661
SmoI CTYRAG 2 cut(s) 66, 661
SphI GCATGC 1 cut(s) 626
Sse9I AATT 9 cut(s) 72, 243, 290, 397, 492, 540, 738, 754, 774
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 1 cut(s) 477
SspI AATATT 2 cut(s) 717, 787
SspMI CTAG 2 cut(s) 128, 680
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 231, 766
TaiI ACGT 1 cut(s) 168
TaqI TCGA 5 cut(s) 467, 483, 549, 569, 602
TasI AATT 9 cut(s) 72, 243, 290, 397, 492, 540, 738, 754, 774
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 4 cut(s) 33, 308, 566, 599
Tru1I TTAA 4 cut(s) 339, 498, 662, 809
Tru9I TTAA 4 cut(s) 339, 498, 662, 809
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 470, 579, 752
Vha464I CTTAAG 1 cut(s) 661
XapI RAATTY 2 cut(s) 290, 540
XceI RCATGY 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 2 cut(s) 128, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.