RchiOBHm_Chr7g0197571

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000238
Physical Location & Seq
Reverse (-)
15502947 .. 15505948
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17675

Sequence Viewer

Length: 957 bp
ATGGGGTTACTTAGCAGGAAAGGGCCATCTGGGTTCTCAGCCTCTTCCACAGCAGAGGAAGTTACTCGAGGGATTGATGGAACTGGTCTCACAGCCATTGTTACAGGAGCCACAAGTGGTCTTGGTTTAGAGACATCGCGCGTTCTTGCATTGCGTGGTGTCCATGTAGTTATGGCAGTAAGGAACACAAATGCAGGGGAAAATGTCAAAGAAGCAATCCTTAAAGAAATCCCCAATGCTAGAGTAGATGTTATGGAGTTAGATCTCAGCTCATTGGCATCTGTAAGAAAGTTTGCAGAAGAGTATAATTCCTTGGGCCTTTCACTGAACATCCTTATTAACAATGCAGGGGTTATAACACCATTCAAGCTTTCTCAAGACAACATAGAGCTGCAATTTGCAACTAATCACTTAGGGCACTTTCTTCTCACAAATCTTTTGTTGGAGACCATGAAACGCACATTGCGAGAAAGCAAGAGAGAGGGAAGAATTGTAAATTTATCGTCAATGGGCCATCAATATGTGTACCGTGAAGGAATTCGTTTTGATAAAATTAATGATGAATCAAGCTACTACAGATATTTGGCTTATGGACAATCCAAGCTTGCTAATGTATTACATGCTAATGAGCTTACAAGGCGTCTGAAGGCAGAAGGAGTGGAGATCACTGCTAATTCTCTTCATCCGGGATCAATCAAGACCAATATCGTGCGCTTTGATAATGGCATTTTGCATTATATTGTGAAGGTGCTGGGTGTATTTATCATTCCGTTCATAAAAACTGTTCAACAGGGTGCAGCAACCACATGCTTTGTGGCACTCCATCCACAAGTTAAGGGAGTAAGCGGCGAATATTTTGCAGACTGTAACATTGTCAAACCCAGCAATCAGGCCAAAGATGCAGATTTGGCTTCCAAACTTTGGGATTTTAGCTTGAGCATGACTAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

318

Amino Acids

34.84

Weight (kDa)

9.08

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 174 1.7e-24 short chain dehydrogenase
KR PF08659 31 - 123 4.1e-07 KR domain
adh_short_C2 PF13561 36 - 240 3.7e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 921
AccII CGCG 2 cut(s) 139, 141
AciI CCGC 1 cut(s) 846
AclWI GGATC 1 cut(s) 697
AcsI RAATTY 2 cut(s) 496, 537
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 921
AgsI TTSAA 2 cut(s) 367, 788
AluBI AGCT 7 cut(s) 270, 370, 391, 570, 604, 631, 933
AluI AGCT 7 cut(s) 270, 370, 391, 570, 604, 631, 933
Alw26I GTCTC 3 cut(s) 92, 125, 440
AlwI GGATC 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 4 cut(s) 23, 316, 511, 891
ApeKI GCWGC 2 cut(s) 391, 797
ApoI RAATTY 2 cut(s) 496, 537
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 2 cut(s) 141, 714
AspS9I GGNCC 3 cut(s) 23, 316, 511
AsuC2I CCSGG 1 cut(s) 687
AvaI CYCGRG 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 378, 809
BccI CCATC 4 cut(s) 34, 71, 522, 831
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 3 cut(s) 92, 125, 440
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 574
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 392, 798, 847
BlsI GCNGC 3 cut(s) 393, 799, 848
Bme1390I CCNGG 1 cut(s) 687
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 3 cut(s) 23, 316, 511
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 2 cut(s) 287, 889
BpuEI CTTGAG 3 cut(s) 360, 935, 955
BpuMI CCSGG 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 640
BsaI GGTCTC 2 cut(s) 92, 440
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 921
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 2 cut(s) 149, 461
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 3 cut(s) 330, 682, 823
BseLI CCNNNNNNNGG 1 cut(s) 921
BseMI GCAATG 2 cut(s) 149, 461
BseMII CTCAG 2 cut(s) 51, 280
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 2 cut(s) 378, 809
BseYI CCCAGC 2 cut(s) 751, 881
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 2 cut(s) 139, 141
BshFI GGCC 4 cut(s) 25, 318, 513, 893
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 686
BslI CCNNNNNNNGG 1 cut(s) 921
BsmAI GTCTC 3 cut(s) 92, 125, 440
BsnI GGCC 4 cut(s) 25, 318, 513, 893
Bso31I GGTCTC 2 cut(s) 92, 440
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 3 cut(s) 262, 663, 689
BspACI CCGC 1 cut(s) 846
BspANI GGCC 4 cut(s) 25, 318, 513, 893
BspCNI CTCAG 2 cut(s) 50, 279
BspFNI CGCG 2 cut(s) 139, 141
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 697
BspTNI GGTCTC 2 cut(s) 92, 440
BsrDI GCAATG 2 cut(s) 149, 461
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 262, 663, 689
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 530, 784, 866
Bst6I CTCTTC 3 cut(s) 49, 294, 684
BstACI GRCGYC 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 4 cut(s) 11, 37, 266, 412
BstF5I GGATG 3 cut(s) 330, 682, 823
BstFNI CGCG 2 cut(s) 139, 141
BstHHI GCGC 2 cut(s) 141, 714
BstKTI GATC 3 cut(s) 265, 666, 692
BstMAI GTCTC 3 cut(s) 92, 125, 440
BstMBI GATC 3 cut(s) 262, 663, 689
BstMWI GCNNNNNNNGC 3 cut(s) 637, 899, 908
BstNSI RCATGY 2 cut(s) 623, 810
BstSCI CCNGG 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 574
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 2 cut(s) 139, 141
BstV1I GCAGC 2 cut(s) 378, 809
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 4 cut(s) 25, 318, 513, 893
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 3 cut(s) 330, 682, 823
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 323, 666
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 2 cut(s) 141, 714
Cfr13I GGNCC 3 cut(s) 23, 316, 511
CseI GACGC 1 cut(s) 629
Csp6I GTAC 1 cut(s) 526
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 5 cut(s) 164, 451, 620, 807, 940
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 4 cut(s) 11, 37, 266, 412
DpnI GATC 3 cut(s) 264, 665, 691
DpnII GATC 3 cut(s) 262, 663, 689
Eam1104I CTCTTC 3 cut(s) 49, 294, 684
EarI CTCTTC 3 cut(s) 49, 294, 684
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 92, 440
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 5 cut(s) 167, 454, 623, 810, 943
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 5 cut(s) 163, 450, 619, 806, 939
Fnu4HI GCNGC 3 cut(s) 392, 798, 847
FokI GGATG 3 cut(s) 317, 669, 810
Fsp4HI GCNGC 3 cut(s) 392, 798, 847
FspBI CTAG 1 cut(s) 240
GlaI GCGC 2 cut(s) 140, 713
GluI GCNGC 3 cut(s) 392, 798, 847
GsaI CCCAGC 2 cut(s) 755, 885
HaeIII GGCC 4 cut(s) 25, 318, 513, 893
HapII CCGG 1 cut(s) 686
HgaI GACGC 1 cut(s) 629
HhaI GCGC 2 cut(s) 141, 714
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 5 cut(s) 167, 454, 623, 810, 943
Hin6I GCGC 2 cut(s) 139, 712
HinP1I GCGC 2 cut(s) 139, 712
HindIII AAGCTT 2 cut(s) 368, 602
HinfI GANTC 1 cut(s) 563
HpaII CCGG 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 1 cut(s) 645
Hpy188III TCNNGA 2 cut(s) 377, 697
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 4 cut(s) 527, 640, 647, 739
HpyCH4III ACNGT 3 cut(s) 530, 784, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 637, 899, 908
HpyF3I CTNAG 4 cut(s) 11, 37, 266, 412
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 5 cut(s) 167, 454, 623, 810, 943
HspAI GCGC 2 cut(s) 139, 712
Kzo9I GATC 3 cut(s) 262, 663, 689
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 378, 809
LweI GCATC 2 cut(s) 287, 889
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 4 cut(s) 6, 61, 100, 866
MalI GATC 3 cut(s) 264, 665, 691
MboI GATC 3 cut(s) 262, 663, 689
MboII GAAGA 5 cut(s) 36, 311, 416, 498, 671
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 7 cut(s) 307, 395, 489, 496, 537, 552, 673
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 4 cut(s) 49, 52, 62, 475
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 4 cut(s) 222, 339, 555, 834
MslI CAYNNNNRTG 2 cut(s) 519, 624
MspI CCGG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 687
MvnI CGCG 2 cut(s) 139, 141
MwoI GCNNNNNNNGC 3 cut(s) 637, 899, 908
NciI CCSGG 1 cut(s) 687
NdeII GATC 3 cut(s) 262, 663, 689
NlaIII CATG 5 cut(s) 167, 454, 623, 810, 943
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 2 cut(s) 623, 810
PaeR7I CTCGAG 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 563
PflMI CCANNNNNTGG 1 cut(s) 921
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 3 cut(s) 393, 799, 848
PshBI ATTAAT 1 cut(s) 555
PsiI TTATAA 1 cut(s) 356
PspFI CCCAGC 2 cut(s) 751, 881
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 3 cut(s) 23, 316, 511
PspXI VCTCGAGB 1 cut(s) 66
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 2 cut(s) 519, 624
SaqAI TTAA 4 cut(s) 222, 339, 555, 834
SatI GCNGC 3 cut(s) 392, 798, 847
Sau3AI GATC 3 cut(s) 262, 663, 689
Sau96I GGNCC 3 cut(s) 23, 316, 511
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 1 cut(s) 420
SetI ASST 8 cut(s) 272, 372, 393, 572, 606, 633, 750, 935
SfaNI GCATC 2 cut(s) 287, 889
SfcI CTRYAG 1 cut(s) 574
Sfr274I CTCGAG 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 519, 624
SmlI CTYRAG 4 cut(s) 66, 375, 934, 950
SmoI CTYRAG 4 cut(s) 66, 375, 934, 950
Sse9I AATT 7 cut(s) 307, 395, 489, 496, 537, 552, 673
SsiI CCGC 1 cut(s) 846
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 685
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 530, 784, 866
TaqI TCGA 1 cut(s) 67
TasI AATT 7 cut(s) 307, 395, 489, 496, 537, 552, 673
TauI GCSGC 1 cut(s) 849
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 4 cut(s) 222, 339, 555, 834
Tru9I TTAA 4 cut(s) 222, 339, 555, 834
TscAI CASTG 2 cut(s) 330, 673
TseI GCWGC 2 cut(s) 391, 797
TspDTI ATGAA 4 cut(s) 467, 576, 671, 763
TspGWI ACGGA 1 cut(s) 759
TspRI CASTG 2 cut(s) 330, 673
Van91I CCANNNNNTGG 1 cut(s) 921
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 496, 537
XceI RCATGY 2 cut(s) 623, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XhoI CTCGAG 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.