RchiOBHm_Chr1g0377871

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000238
Physical Location & Seq
Forward (+)
64550182 .. 64553197
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60131

Sequence Viewer

Length: 1008 bp
ATGTGGTTCTTTAGAAGTATAGGCCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGCTACTCAAGGGATTGATGCTACTGGTCTCACTGCCATTGTTGAAACTTTGGCTTTGTCCTACATCAATGCTTTTACTCAGTCTGCTCTGGTTTCTTTCAGATCAATAGTTGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATTATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGAAGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTCAGTTCATTGTCATCTGTGAGGAAATTCGCATCAGATTACAAATCTGCTGGTCATCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCAACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCACATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTGCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTTTCCATATCATGGAGGAATCCGTTTTGATAAAATCAACGACCCATCGGGGTACAGCAGGTGGGCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAATTGAAGGAAGAGGGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGTAATTCTCACCAATCTTTTCCGTCATAGCAATGTTTTAAATGGGCTTGTTAATGTGCTCGGTAAAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCATTGCATCCACAAGCTGAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAACATCCCAAGCTGAAGACGAGTTGTTGGCAAAGAAACTCTGGGATTTCAGCAAGGATTTGACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

335

Amino Acids

36.14

Weight (kDa)

8.78

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 56 - 201 3.5e-24 short chain dehydrogenase
KR PF08659 56 - 153 5.8e-07 KR domain
adh_short_C2 PF13561 58 - 303 1.5e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 599
AccBSI CCGCTC 1 cut(s) 903
AccII CGCG 1 cut(s) 205
AciI CCGC 2 cut(s) 260, 903
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 4 cut(s) 446, 597, 912, 972
AcvI CACGTG 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 203
AgeI ACCGGT 1 cut(s) 585
AgsI TTSAA 4 cut(s) 104, 458, 705, 715
AjnI CCWGG 1 cut(s) 754
AleI CACNNNNGTG 1 cut(s) 756
AluBI AGCT 6 cut(s) 62, 581, 673, 677, 890, 950
AluI AGCT 6 cut(s) 62, 581, 673, 677, 890, 950
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 257, 653, 854
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AsiGI ACCGGT 1 cut(s) 585
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 5 cut(s) 575, 743, 760, 910, 917
AsuNHI GCTAGC 1 cut(s) 673
BaeGI GKGCMC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 224
BbrPI CACGTG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 3 cut(s) 244, 640, 866
BccI CCATC 2 cut(s) 34, 640
BciT130I CCWGG 1 cut(s) 756
BciVI GTATCC 2 cut(s) 508, 580
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 180, 674
BfuAI ACCTGC 1 cut(s) 636
BfuI GTATCC 2 cut(s) 508, 580
BisI GCNGC 3 cut(s) 258, 654, 855
BlsI GCNGC 3 cut(s) 259, 655, 856
Bme1390I CCNGG 1 cut(s) 756
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 5 cut(s) 67, 185, 304, 371, 889
BmtI GCTAGC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 318, 754
BsaWI WCCGGW 1 cut(s) 585
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 2 cut(s) 796, 875
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 2 cut(s) 318, 754
BseGI GGATG 3 cut(s) 385, 880, 941
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMI GCAATG 2 cut(s) 796, 875
BseMII CTCAG 2 cut(s) 152, 346
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 3 cut(s) 244, 640, 866
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 819
BsiSI CCGG 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 229, 819
Bsp143I GATC 2 cut(s) 161, 328
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 2 cut(s) 260, 903
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 151, 345
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 636
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 903
BsrDI GCAATG 2 cut(s) 796, 875
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 2 cut(s) 318, 754
BssMI GATC 2 cut(s) 161, 328
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 1 cut(s) 923
Bst6I CTCTTC 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 675, 690
BstDEI CTNAG 2 cut(s) 138, 332
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 3 cut(s) 385, 880, 941
BstFNI CGCG 1 cut(s) 205
BstKTI GATC 2 cut(s) 164, 331
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 161, 328
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 3 cut(s) 244, 640, 866
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 328
BsuI GTATCC 2 cut(s) 508, 580
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 3 cut(s) 385, 880, 941
BtsI GCAGTG 3 cut(s) 90, 215, 300
BtsIMutI CAGTG 4 cut(s) 90, 192, 215, 300
BveI ACCTGC 1 cut(s) 636
Cac8I GCNNGC 2 cut(s) 675, 690
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 640
CspAI ACCGGT 1 cut(s) 585
CviAII CATG 4 cut(s) 230, 319, 599, 689
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 2 cut(s) 138, 332
DpnI GATC 2 cut(s) 163, 330
DpnII GATC 2 cut(s) 161, 328
DraI TTTAAA 1 cut(s) 798
DraIII CACNNNGTG 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 4 cut(s) 446, 597, 912, 972
Eco72I CACGTG 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 233, 322, 602, 692
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FatI CATG 4 cut(s) 229, 318, 598, 688
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 258, 654, 855
FokI GGATG 3 cut(s) 372, 867, 928
Fsp4HI GCNGC 3 cut(s) 258, 654, 855
FspBI CTAG 2 cut(s) 180, 674
GluI GCNGC 3 cut(s) 258, 654, 855
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 586
Hin1II CATG 4 cut(s) 233, 322, 602, 692
HinfI GANTC 1 cut(s) 606
HpaII CCGG 1 cut(s) 586
HphI GGTGA 5 cut(s) 575, 743, 760, 910, 917
Hpy188I TCNGA 4 cut(s) 161, 367, 577, 919
HpyAV CCTTC 3 cut(s) 545, 709, 887
HpyCH4III ACNGT 1 cut(s) 923
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 9 cut(s) 215, 413, 533, 539, 656, 688, 740, 746, 880
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 138, 332
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 4 cut(s) 233, 322, 602, 692
Kzo9I GATC 2 cut(s) 161, 328
LmnI GCTCC 2 cut(s) 173, 851
Lsp1109I GCAGC 3 cut(s) 244, 640, 866
LweI GCATC 5 cut(s) 67, 185, 304, 371, 889
MaeI CTAG 2 cut(s) 180, 674
MaeII ACGT 1 cut(s) 535
MalI GATC 2 cut(s) 163, 330
MbiI CCGCTC 1 cut(s) 903
MboI GATC 2 cut(s) 161, 328
MboII GAAGA 4 cut(s) 36, 68, 731, 965
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 229, 819
MluCI AATT 7 cut(s) 309, 356, 402, 417, 558, 710, 762
MluI ACGCGT 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 151, 306, 492
MnlI CCTC 6 cut(s) 240, 345, 399, 583, 596, 715
MseI TTAA 6 cut(s) 288, 401, 405, 797, 810, 834
MslI CAYNNNNRTG 2 cut(s) 756, 789
MspI CCGG 1 cut(s) 586
MspR9I CCNGG 1 cut(s) 756
MunI CAATTG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 59
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 658
NdeII GATC 2 cut(s) 161, 328
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 4 cut(s) 233, 322, 602, 692
NlaIV GGNNCC 1 cut(s) 226
NspI RCATGY 1 cut(s) 692
OliI CACNNNNGTG 1 cut(s) 756
PacI TTAATTAA 1 cut(s) 405
PaeI GCATGC 1 cut(s) 692
PaqCI CACCTGC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 606
PflMI CCANNNNNTGG 1 cut(s) 599
PinAI ACCGGT 1 cut(s) 585
PkrI GCNGC 3 cut(s) 259, 655, 856
PmaCI CACGTG 1 cut(s) 536
PmlI CACGTG 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 754
PspCI CACGTG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 2 cut(s) 756, 789
SaqAI TTAA 6 cut(s) 288, 401, 405, 797, 810, 834
SatI GCNGC 3 cut(s) 258, 654, 855
Sau3AI GATC 2 cut(s) 161, 328
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 2 cut(s) 229, 819
SetI ASST 9 cut(s) 64, 487, 538, 583, 650, 675, 679, 892, 952
SfaNI GCATC 5 cut(s) 67, 185, 304, 371, 889
SmiMI CAYNNNNRTG 2 cut(s) 756, 789
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 692
Sse9I AATT 7 cut(s) 309, 356, 402, 417, 558, 710, 762
SsiI CCGC 2 cut(s) 260, 903
SspI AATATT 2 cut(s) 911, 928
SspMI CTAG 2 cut(s) 180, 674
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 923
TaiI ACGT 1 cut(s) 538
TasI AATT 7 cut(s) 309, 356, 402, 417, 558, 710, 762
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 6 cut(s) 288, 401, 405, 797, 810, 834
Tru9I TTAA 6 cut(s) 288, 401, 405, 797, 810, 834
TscAI CASTG 4 cut(s) 97, 199, 222, 307
TseI GCWGC 3 cut(s) 257, 653, 854
TspDTI ATGAA 2 cut(s) 327, 536
TspGWI ACGGA 2 cut(s) 599, 770
TspRI CASTG 4 cut(s) 97, 199, 222, 307
Van91I CCANNNNNTGG 1 cut(s) 599
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 692
XspI CTAG 2 cut(s) 180, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.