MD06G1085800.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000238
Physical Location & Seq
Forward (+)
21176596 .. 21179042
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1085800.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGGTGGGATCTTTAGCAAGAAAGGACCATCTGGGTTCTCATCCTGGTCGACAGCCGAGGAAGTTACCGAAGGGATTGATGGAACTGGTCTAACTGCCATTGTTACAGGAGGCTCAAGTGGTATTGGGGCGGAGACATCACGTGTTCTTGCACTGCGAGGTGTCCATGTAGTTATGGCAGTAAGGAACACGGAAGCTGGGGAACACGTTAAACAAGCGATCCTTACAGAAGTACCCGACGCAAAAATTGATGTTAGGGAGTTGGATCTCAGCTCATTGGAATCTGTGAGAAAATTTGGAGCAGATTATTGTTCCTCCGGCCTTCCACTGAACATCCTTGTTAACAATGCAGGGTTAGGGGCAGCTCCATTCAAGCTTTCCAAAGACGGCATAGAAATGCAATTTGCAACTAACCATCTAGGTCATTTTCTTCTCACTGAACTTGTGTTGGAGACCATGAAAAGAACGTCACGAGAGAGCAAAGTAGAGGGGAGAATTGTTAATGTATCGTCATCACTTCATCCAGATGGGTACCGCGAAGGGATTCGTTTTGATAAAATTAATGATGAAGCAGGATACAACAGATATTATGCCTATGCTCAATCCAAGCTTGCTAACTTGTTACATACTAATGAACTTACAAGGCAAAGAAGGGGTAATTCTCTTCATCCCGGTATGATTTTTACCAATATCGGGCGCCATGATCTCTTGTTAAGCTGTTTTTTCGGTGTGAGTGGACTCTTCAACAAAACTAAAACTGTTCCTCAGGGTGCGGCAACCTCATGCTATCTGGCACTTAACCCACAAGTTAAGGGCGTATCCGGCGAATACTTTGTGGACTCTAACATTGGCAAACAGAGTTCTCAGGCAAAAGATGCAGATTTGGCTAAAAAACTGTGGGATTTTAGCTTGAGTTTGACCAATGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

311

Amino Acids

33.48

Weight (kDa)

8.32

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 173 1.1e-24 short chain dehydrogenase
adh_short_C2 PF13561 40 - 173 5.5e-11 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 531
AccB1I GGYRCC 2 cut(s) 531, 696
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 537
AciI CCGC 3 cut(s) 131, 535, 773
AclWI GGATC 3 cut(s) 17, 214, 273
AcsI RAATTY 1 cut(s) 293
AcvI CACGTG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 2 cut(s) 234, 533
AfiI CCNNNNNNNGG 1 cut(s) 693
AflIII ACRYGT 2 cut(s) 142, 205
AgsI TTSAA 2 cut(s) 373, 745
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 7 cut(s) 197, 273, 365, 376, 610, 717, 909
AluI AGCT 7 cut(s) 197, 273, 365, 376, 610, 717, 909
Alw26I GTCTC 2 cut(s) 128, 446
AlwI GGATC 3 cut(s) 17, 214, 273
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 293
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 543
Asp718I GGTACC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 672
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 765
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BanI GGYRCC 2 cut(s) 531, 696
BauI CACGAG 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 143
BbvI GCAGC 1 cut(s) 374
BccI CCATC 4 cut(s) 37, 74, 423, 521
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 46
BciVI GTATCC 2 cut(s) 569, 829
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 128, 446
BfaI CTAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 700
BfuI GTATCC 2 cut(s) 569, 829
BisI GCNGC 2 cut(s) 363, 774
BlsI GCNGC 2 cut(s) 364, 775
Bme1390I CCNGG 2 cut(s) 46, 672
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 533, 698
BmrFI CCNGG 2 cut(s) 46, 672
BmsI GCATC 1 cut(s) 865
BpuEI CTTGAG 2 cut(s) 100, 931
BpuMI CCSGG 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 697
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 693
Bse1I ACTGG 1 cut(s) 91
Bse21I CCTNAGG 1 cut(s) 765
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 4 cut(s) 41, 333, 520, 667
BseLI CCNNNNNNNGG 1 cut(s) 693
BseMII CTCAG 3 cut(s) 283, 779, 878
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 374
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 2 cut(s) 531, 696
BsiSI CCGG 3 cut(s) 318, 672, 822
BslI CCNNNNNNNGG 1 cut(s) 693
BsmAI GTCTC 2 cut(s) 128, 446
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 446
Bsp143I GATC 4 cut(s) 9, 219, 265, 703
BspACI CCGC 3 cut(s) 131, 535, 773
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 3 cut(s) 282, 778, 877
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 2 cut(s) 533, 698
BspPI GGATC 3 cut(s) 17, 214, 273
BspT107I GGYRCC 2 cut(s) 531, 696
BspTNI GGTCTC 1 cut(s) 446
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 4 cut(s) 9, 219, 265, 703
BssNI GRCGYC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 760, 897
Bst6I CTCTTC 2 cut(s) 669, 746
BstACI GRCGYC 1 cut(s) 697
BstAPI GCANNNNNTGC 1 cut(s) 875
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 3 cut(s) 269, 765, 864
BstF5I GGATG 4 cut(s) 41, 333, 520, 667
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 4 cut(s) 12, 222, 268, 706
BstMAI GTCTC 2 cut(s) 128, 446
BstMBI GATC 4 cut(s) 9, 219, 265, 703
BstMWI GCNNNNNNNGC 3 cut(s) 822, 875, 884
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 44, 670
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 9, 265
BstYI RGATCY 2 cut(s) 9, 265
Bsu36I CCTNAGG 1 cut(s) 765
BsuI GTATCC 2 cut(s) 569, 829
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 4 cut(s) 41, 333, 520, 667
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 3 cut(s) 152, 326, 435
Cac8I GCNNGC 1 cut(s) 612
CfoI GCGC 1 cut(s) 699
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 233, 532
CviAII CATG 4 cut(s) 167, 457, 701, 783
CviQI GTAC 2 cut(s) 233, 532
DdeI CTNAG 3 cut(s) 269, 765, 864
DinI GGCGCC 1 cut(s) 698
DpnI GATC 4 cut(s) 11, 221, 267, 705
DpnII GATC 4 cut(s) 9, 219, 265, 703
Eam1104I CTCTTC 2 cut(s) 669, 746
EarI CTCTTC 2 cut(s) 669, 746
EciI GGCGGA 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 26
Eco72I CACGTG 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 698
EheI GGCGCC 1 cut(s) 698
FaeI CATG 4 cut(s) 170, 460, 704, 786
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 4 cut(s) 166, 456, 700, 782
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 363, 774
FokI GGATG 4 cut(s) 28, 320, 507, 654
Fsp4HI GCNGC 2 cut(s) 363, 774
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 698
GluI GCNGC 2 cut(s) 363, 774
GsaI CCCAGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 1 cut(s) 321
HapII CCGG 3 cut(s) 318, 672, 822
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 699
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 4 cut(s) 170, 460, 704, 786
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HincII GTYRAC 2 cut(s) 51, 343
HindII GTYRAC 2 cut(s) 51, 343
HindIII AAGCTT 2 cut(s) 374, 608
HinfI GANTC 4 cut(s) 281, 544, 738, 839
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 3 cut(s) 318, 672, 822
Hpy166II GTNNAC 4 cut(s) 51, 343, 737, 838
Hpy188III TCNNGA 2 cut(s) 471, 524
Hpy8I GTNNAC 4 cut(s) 51, 343, 737, 838
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 4 cut(s) 65, 332, 533, 645
HpyCH4III ACNGT 2 cut(s) 760, 897
HpyCH4IV ACGT 3 cut(s) 142, 207, 467
HpyCH4V TGCA 5 cut(s) 152, 350, 400, 407, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 822, 875, 884
HpyF3I CTNAG 3 cut(s) 269, 765, 864
HpySE526I ACGT 3 cut(s) 142, 207, 467
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 4 cut(s) 170, 460, 704, 786
HspAI GCGC 1 cut(s) 697
KasI GGCGCC 1 cut(s) 696
KpnI GGTACC 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 9, 219, 265, 703
LmnI GCTCC 2 cut(s) 299, 370
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 865
MaeI CTAG 1 cut(s) 419
MaeII ACGT 3 cut(s) 142, 207, 467
MaeIII GTNAC 4 cut(s) 64, 103, 468, 621
MalI GATC 4 cut(s) 11, 221, 267, 705
MboI GATC 4 cut(s) 9, 219, 265, 703
MboII GAAGA 3 cut(s) 422, 656, 733
MflI RGATCY 2 cut(s) 9, 265
MluCI AATT 6 cut(s) 246, 293, 401, 495, 558, 658
Mly113I GGCGCC 1 cut(s) 697
MlyI GAGTC 2 cut(s) 732, 833
MmeI TCCRAC 2 cut(s) 243, 429
MnlI CCTC 7 cut(s) 52, 104, 152, 325, 481, 774, 790
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 7 cut(s) 210, 342, 501, 561, 713, 798, 810
MslI CAYNNNNRTG 3 cut(s) 395, 525, 630
MspI CCGG 3 cut(s) 318, 672, 822
MspR9I CCNGG 2 cut(s) 46, 672
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 822, 875, 884
NarI GGCGCC 1 cut(s) 697
NciI CCSGG 1 cut(s) 672
NdeII GATC 4 cut(s) 9, 219, 265, 703
NlaIII CATG 4 cut(s) 170, 460, 704, 786
NlaIV GGNNCC 2 cut(s) 533, 698
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 281, 544
PkrI GCNGC 2 cut(s) 364, 775
PleI GAGTC 2 cut(s) 732, 833
PluTI GGCGCC 1 cut(s) 700
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
PpsI GAGTC 2 cut(s) 732, 833
Ppu21I YACGTR 1 cut(s) 143
PshBI ATTAAT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 44
PspCI CACGTG 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 533, 698
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 2 cut(s) 9, 265
RsaI GTAC 2 cut(s) 234, 533
RsaNI GTAC 2 cut(s) 233, 532
RseI CAYNNNNRTG 3 cut(s) 395, 525, 630
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 7 cut(s) 210, 342, 501, 561, 713, 798, 810
SatI GCNGC 2 cut(s) 363, 774
Sau3AI GATC 4 cut(s) 9, 219, 265, 703
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 2 cut(s) 732, 833
ScrFI CCNGG 2 cut(s) 46, 672
SfaNI GCATC 1 cut(s) 865
SfoI GGCGCC 1 cut(s) 698
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 3 cut(s) 395, 525, 630
SmlI CTYRAG 2 cut(s) 115, 910
SmoI CTYRAG 2 cut(s) 115, 910
Sse9I AATT 6 cut(s) 246, 293, 401, 495, 558, 658
SsiI CCGC 3 cut(s) 131, 535, 773
SspDI GGCGCC 1 cut(s) 696
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 44, 670
TaaI ACNGT 2 cut(s) 760, 897
TaiI ACGT 3 cut(s) 145, 210, 470
TaqI TCGA 1 cut(s) 50
TasI AATT 6 cut(s) 246, 293, 401, 495, 558, 658
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 2 cut(s) 281, 544
Tru1I TTAA 7 cut(s) 210, 342, 501, 561, 713, 798, 810
Tru9I TTAA 7 cut(s) 210, 342, 501, 561, 713, 798, 810
TscAI CASTG 3 cut(s) 159, 333, 442
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 5 cut(s) 473, 509, 582, 648, 656
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 159, 333, 442
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.