Prupe.5G101900_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000238
Physical Location & Seq
Forward (+)
10944492 .. 10947005
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G101900.1

Sequence Viewer

Length: 951 bp
ATGGGGATTTTTAGCAAGAAACAACAATCTGGGTTCTCTGCCTCTTCAACAGCAGAGGAAGTTACTGAAGGGATTGATGGAACTGGTCTTACTGCAATTGTTACAGGAGCCTCAAGTGGTATTGGTGTAGAGACAGCGCGTGTTCTTGCATTGCGCGGTGTCCATGTAGTTATGGCAGTAAGGAACACCGATGCTGGGGCGAATGTCAAAGAAGTAATCCTTAAAGAAATTCCCAATGCTAAAATTGATGTCAGGGAGTTAGACCTCAGCTCATTCACATCTGTAAGAAAATTTGCAGCAGATTATCGTTCCTCAGGCCTTCCATTGAACATCCTTATTAACAATGCAGGGGTAGGAGTGACACCGTTCAAACTTTCTCAAGACAGTATAGAACTCCAGTTCGCAACGAATCATTTAGGTCATTTTCTTCTCACAAATCTTTTGTTGGAGACCATGAAAAGCACATCGCGAGAAAGCAACACAGAGGGGAGAATCGTGAACGTATCATCACTGAGCCATCATTACGGATACCGTGAAGGAATTCGTTTTGATAAACTTAATGATGAACCCACATACAACAGGCATTTTGCTTATGCACAATCCAAACTTGCTAACATCCTACATGCTAACGAGCTTTCGCGGTGTCTGAAGGAAGAAGGGGTAGAGATAACGGCTAATTCTGTTCATCCCGGAGCAATTCTCACGAATATTACCCGCCATGACAGCTTCGCACGGTGTGTTTTTACTGTGGTGTGTTTGTTTATCTCTAAAACTGTTCAGCAGGGTGCGGCAACCACATGCTTTGTGGCACTCAATCCACAAGTTAAGGGAGTAGGCGGCGAATACTTTTCGGACTGTAAGATTGCCAAACGGAGCTCTCAGGCAAAAGATGCTGATATGGCTAGGAGACTCTGGGATTGTAGCTTTAGTTTGACCAATCCCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

34.36

Weight (kDa)

8.68

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 139, 156, 469, 640
AciI CCGC 5 cut(s) 156, 640, 715, 788, 837
AcsI RAATTY 3 cut(s) 228, 290, 540
AcuI CTGAAG 2 cut(s) 87, 668
AdeI CACNNNGTG 1 cut(s) 737
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 3 cut(s) 48, 328, 370
AluBI AGCT 5 cut(s) 270, 634, 726, 876, 924
AluI AGCT 5 cut(s) 270, 634, 726, 876, 924
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 3 cut(s) 125, 443, 901
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 3 cut(s) 228, 290, 540
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 2 cut(s) 139, 156
AsuC2I CCSGG 1 cut(s) 690
AxyI CCTNAGG 1 cut(s) 313
BanII GRGCYC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 878
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 308
BccI CCATC 2 cut(s) 71, 525
BceAI ACGGC 1 cut(s) 687
BciVI GTATCC 1 cut(s) 521
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 3 cut(s) 125, 443, 901
BfaI CTAG 1 cut(s) 903
BfuI GTATCC 1 cut(s) 521
BisI GCNGC 3 cut(s) 297, 789, 838
BlsI GCNGC 3 cut(s) 298, 790, 839
Bme1390I CCNGG 1 cut(s) 690
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 2 cut(s) 181, 880
BplI GAGNNNNNCTC 2 cut(s) 684, 716
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 97, 363
BpuMI CCSGG 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 88, 397
Bse21I CCTNAGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 149
BseGI GGATG 3 cut(s) 330, 615, 685
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 4 cut(s) 280, 327, 503, 893
BseNI ACTGG 2 cut(s) 88, 397
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 4 cut(s) 139, 156, 469, 640
BshFI GGCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 878
BsiSI CCGG 1 cut(s) 690
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 3 cut(s) 125, 443, 901
BsnI GGCC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 878
Bsp68I TCGCGA 1 cut(s) 469
BspACI CCGC 5 cut(s) 156, 640, 715, 788, 837
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 4 cut(s) 279, 326, 504, 892
BspFNI CGCG 4 cut(s) 139, 156, 469, 640
BspLI GGNNCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 2 cut(s) 88, 397
Bst4CI ACNGT 7 cut(s) 366, 386, 533, 735, 748, 775, 857
Bst6I CTCTTC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 890
BstDEI CTNAG 4 cut(s) 266, 313, 512, 879
BstF5I GGATG 3 cut(s) 330, 615, 685
BstFNI CGCG 4 cut(s) 139, 156, 469, 640
BstHHI GCGC 2 cut(s) 139, 156
BstMAI GTCTC 3 cut(s) 125, 443, 901
BstMWI GCNNNNNNNGC 3 cut(s) 723, 890, 899
BstNSI RCATGY 2 cut(s) 626, 801
BstSCI CCNGG 1 cut(s) 688
BstUI CGCG 4 cut(s) 139, 156, 469, 640
BstV1I GCAGC 1 cut(s) 308
Bsu36I CCTNAGG 1 cut(s) 313
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 3 cut(s) 330, 615, 685
BtsIMutI CAGTG 1 cut(s) 509
BtuMI TCGCGA 1 cut(s) 469
CfoI GCGC 2 cut(s) 139, 156
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 5 cut(s) 164, 454, 623, 719, 798
DdeI CTNAG 4 cut(s) 266, 313, 512, 879
DraIII CACNNNGTG 1 cut(s) 737
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 878
Eco31I GGTCTC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 876
Eco57I CTGAAG 2 cut(s) 87, 668
Eco81I CCTNAGG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 878
FaeI CATG 5 cut(s) 167, 457, 626, 722, 801
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 5 cut(s) 163, 453, 622, 718, 797
FauI CCCGC 1 cut(s) 722
Fnu4HI GCNGC 3 cut(s) 297, 789, 838
FokI GGATG 3 cut(s) 317, 602, 672
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 3 cut(s) 297, 789, 838
FspBI CTAG 1 cut(s) 903
GlaI GCGC 2 cut(s) 138, 155
GluI GCNGC 3 cut(s) 297, 789, 838
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 690
HhaI GCGC 2 cut(s) 139, 156
Hin1II CATG 5 cut(s) 167, 457, 626, 722, 801
Hin6I GCGC 2 cut(s) 137, 154
HinP1I GCGC 2 cut(s) 137, 154
HinfI GANTC 3 cut(s) 409, 492, 909
HpaII CCGG 1 cut(s) 690
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 2 cut(s) 648, 853
Hpy188III TCNNGA 4 cut(s) 380, 468, 496, 703
Hpy8I GTNNAC 1 cut(s) 499
HpyAV CCTTC 5 cut(s) 62, 329, 530, 643, 650
HpyCH4III ACNGT 7 cut(s) 366, 386, 533, 735, 748, 775, 857
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 95, 149, 296, 347, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 723, 890, 899
HpyF3I CTNAG 4 cut(s) 266, 313, 512, 879
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 5 cut(s) 167, 457, 626, 722, 801
HspAI GCGC 2 cut(s) 137, 154
LmnI GCTCC 3 cut(s) 107, 692, 873
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 181, 880
MaeI CTAG 1 cut(s) 903
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 61, 100, 358
MboII GAAGA 3 cut(s) 36, 419, 665
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 878
MluCI AATT 7 cut(s) 96, 228, 243, 290, 540, 676, 696
MlyI GAGTC 1 cut(s) 903
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 6 cut(s) 49, 52, 121, 275, 322, 478
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 4 cut(s) 222, 339, 558, 825
MspI CCGG 1 cut(s) 690
MspR9I CCNGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 96
MvnI CGCG 4 cut(s) 139, 156, 469, 640
MwoI GCNNNNNNNGC 3 cut(s) 723, 890, 899
NciI CCSGG 1 cut(s) 690
NlaIII CATG 5 cut(s) 167, 457, 626, 722, 801
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 358
NruI TCGCGA 1 cut(s) 469
NspI RCATGY 2 cut(s) 626, 801
PceI AGGCCT 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 409, 492
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 3 cut(s) 298, 790, 839
PleI GAGTC 1 cut(s) 903
PpsI GAGTC 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 878
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 109
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
RruI TCGCGA 1 cut(s) 469
SacI GAGCTC 1 cut(s) 878
SaqAI TTAA 4 cut(s) 222, 339, 558, 825
SatI GCNGC 3 cut(s) 297, 789, 838
SchI GAGTC 1 cut(s) 903
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 1 cut(s) 878
SetI ASST 8 cut(s) 267, 272, 421, 504, 636, 728, 878, 926
SfaNI GCATC 2 cut(s) 181, 880
SmlI CTYRAG 2 cut(s) 112, 378
SmoI CTYRAG 2 cut(s) 112, 378
Sse9I AATT 7 cut(s) 96, 228, 243, 290, 540, 676, 696
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 5 cut(s) 156, 640, 715, 788, 837
SspI AATATT 1 cut(s) 709
SspMI CTAG 1 cut(s) 903
SstI GAGCTC 1 cut(s) 878
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 688
TaaI ACNGT 7 cut(s) 366, 386, 533, 735, 748, 775, 857
TaiI ACGT 1 cut(s) 504
TasI AATT 7 cut(s) 96, 228, 243, 290, 540, 676, 696
TauI GCSGC 2 cut(s) 791, 840
TfiI GAWTC 2 cut(s) 409, 492
Tru1I TTAA 4 cut(s) 222, 339, 558, 825
Tru9I TTAA 4 cut(s) 222, 339, 558, 825
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 470, 579, 674
TspGWI ACGGA 2 cut(s) 540, 886
TspRI CASTG 1 cut(s) 516
XapI RAATTY 3 cut(s) 228, 290, 540
XceI RCATGY 2 cut(s) 626, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.