pycom07g25090

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000238
Physical Location & Seq
Forward (+)
25530069 .. 25531945
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25090.4

Sequence Viewer

Length: 792 bp
ATGGCAGTGAGGAACATGGCTGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATCCCCACTGCCAAAGTTGATGCCATGGAATTGGATCTCAGTTCGTTATCATCCGTTAGGAAATTTGCATCGGATTTAAATTCCTCCGGTCTTCCTCTTAACATTTTAATTAACAATGCAGGAGTTATGGGAACCCCTTTCATGCTTTCGAAGGACAAGATTGAACTTCAGTTCGCCACAAACCACGGAGGTCATTTTCTGTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAGCACTCAACAGCGGCAAAGAAGGGAGGATCATAAATGTGTCCTCAGAAGCTCACCGCTACTCTTATGCTGAAGGAATTCGTTTTGATAAAATTAACGACCAAGAAGGGTACAGCAGCTTTCGTGCATATGGCCAATCAAAGCTTGCTAACATTTTGCACACTAATGAGCTTGCAAGACGCTTAAAGGAAGAAGGAGCAGATATGACTGCAAACTCACTTCACCCTGGTGGAATTGTTACCAATCTGTTTCGTTATAACAGCGCTATCAACGGGCTTGTTAATGTGCTTGGTAGAGCTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACGACGTGCTACGTAGCACTGCATCCACAAGTCAAGGGGGTGACCGGCGAATATTTTTCGGACTGTAACCTATCCAAGCCAAGGCCGCAAGGTCAAGACATGGAGATGGCGAAGAAACTATGGGATTTCAGTATGGATTTGACCAAACAATCTTCCGAAAACTCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

264

Amino Acids

28.8

Weight (kDa)

8.95

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AciI CCGC 3 cut(s) 306, 349, 707
AclWI GGATC 2 cut(s) 99, 329
AcoI YGGCCR 1 cut(s) 424
AcsI RAATTY 3 cut(s) 119, 136, 369
AcuI CTGAAG 2 cut(s) 209, 384
AfaI GTAC 1 cut(s) 404
AfeI AGCGCT 1 cut(s) 556
AfiI CCNNNNNNNGG 1 cut(s) 702
AgsI TTSAA 1 cut(s) 221
AjiI CACGTC 1 cut(s) 627
AjnI CCWGG 1 cut(s) 517
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 5 cut(s) 344, 411, 436, 463, 590
AluI AGCT 5 cut(s) 344, 411, 436, 463, 590
AlwI GGATC 2 cut(s) 99, 329
Aor51HI AGCGCT 1 cut(s) 556
AoxI GGCC 2 cut(s) 424, 704
ApeKI GCWGC 3 cut(s) 20, 408, 617
ApoI RAATTY 3 cut(s) 119, 136, 369
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 338, 506, 673
AsuII TTCGAA 1 cut(s) 206
BalI TGGCCA 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 7, 420, 629
BccI CCATC 1 cut(s) 721
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 558
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 5 cut(s) 21, 307, 409, 618, 707
BlsI GCNGC 5 cut(s) 22, 308, 410, 619, 708
Bme1390I CCNGG 1 cut(s) 519
BmgBI CACGTC 1 cut(s) 627
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 4 cut(s) 22, 67, 134, 652
BpiI GAAGAC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 634
BsaJI CCNNGG 4 cut(s) 81, 241, 517, 701
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 702
Bse118I RCCGGY 2 cut(s) 23, 665
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 4 cut(s) 81, 241, 517, 701
BseGI GGATG 2 cut(s) 107, 643
BseLI CCNNNNNNNGG 1 cut(s) 702
BseMII CTCAG 2 cut(s) 109, 351
BseXI GCAGC 3 cut(s) 7, 420, 629
BshFI GGCC 2 cut(s) 426, 706
BsiSI CCGG 3 cut(s) 24, 144, 666
BslI CCNNNNNNNGG 1 cut(s) 702
BsnI GGCC 2 cut(s) 426, 706
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 91, 321
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 3 cut(s) 306, 349, 707
BspANI GGCC 2 cut(s) 426, 706
BspCNI CTCAG 2 cut(s) 108, 350
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 2 cut(s) 99, 329
BspT104I TTCGAA 1 cut(s) 206
BsrFI RCCGGY 2 cut(s) 23, 665
BssAI RCCGGY 2 cut(s) 23, 665
BssECI CCNNGG 4 cut(s) 81, 241, 517, 701
BssMI GATC 2 cut(s) 91, 321
BssT1I CCWWGG 2 cut(s) 81, 701
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 634
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 438, 465
BstDEI CTNAG 2 cut(s) 95, 337
BstDSI CCRYGG 2 cut(s) 81, 241
BstEII GGTNACC 1 cut(s) 661
BstF5I GGATG 2 cut(s) 107, 643
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 2 cut(s) 94, 324
BstMBI GATC 2 cut(s) 91, 321
BstMWI GCNNNNNNNGC 1 cut(s) 706
BstNI CCWGG 1 cut(s) 519
BstPI GGTNACC 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 517
BstSNI TACGTA 1 cut(s) 634
BstV1I GCAGC 3 cut(s) 7, 420, 629
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 1 cut(s) 91
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 2 cut(s) 426, 706
BtgI CCRYGG 2 cut(s) 81, 241
BtrI CACGTC 1 cut(s) 627
BtsCI GGATG 2 cut(s) 107, 643
BtsI GCAGTG 3 cut(s) 12, 63, 638
BtsIMutI CAGTG 3 cut(s) 12, 63, 638
Cac8I GCNNGC 2 cut(s) 438, 465
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 2 cut(s) 23, 665
CseI GACGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 403
CviAII CATG 4 cut(s) 16, 82, 199, 721
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 95, 337
DpnI GATC 2 cut(s) 93, 323
DpnII GATC 2 cut(s) 91, 321
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 424
Eco105I TACGTA 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 81, 701
Eco47III AGCGCT 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 209, 384
Eco91I GGTNACC 1 cut(s) 661
EcoO65I GGTNACC 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 81, 701
ErhI CCWWGG 2 cut(s) 81, 701
FaeI CATG 4 cut(s) 19, 85, 202, 724
FatI CATG 4 cut(s) 15, 81, 198, 720
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 5 cut(s) 21, 307, 409, 618, 707
FokI GGATG 2 cut(s) 94, 630
Fsp4HI GCNGC 5 cut(s) 21, 307, 409, 618, 707
GlaI GCGC 1 cut(s) 556
GluI GCNGC 5 cut(s) 21, 307, 409, 618, 707
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 2 cut(s) 426, 706
HapII CCGG 3 cut(s) 24, 144, 666
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 557
Hin1II CATG 4 cut(s) 19, 85, 202, 724
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 434
HpaII CCGG 3 cut(s) 24, 144, 666
HphI GGTGA 3 cut(s) 338, 506, 673
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 4 cut(s) 130, 340, 682, 778
Hpy188III TCNNGA 1 cut(s) 716
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 6 cut(s) 46, 202, 308, 359, 392, 479
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 2 cut(s) 626, 633
HpyCH4V TGCA 8 cut(s) 35, 125, 176, 419, 451, 467, 503, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 706
HpyF3I CTNAG 2 cut(s) 95, 337
HpySE526I ACGT 2 cut(s) 626, 633
Hsp92II CATG 4 cut(s) 19, 85, 202, 724
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 2 cut(s) 91, 321
LmnI GCTCC 2 cut(s) 488, 614
LpnPI CCDG 7 cut(s) 37, 157, 162, 504, 531, 596, 679
Lsp1109I GCAGC 3 cut(s) 7, 420, 629
LweI GCATC 4 cut(s) 22, 67, 134, 652
MaeII ACGT 2 cut(s) 626, 633
MaeIII GTNAC 3 cut(s) 529, 661, 686
MalI GATC 2 cut(s) 93, 323
MboI GATC 2 cut(s) 91, 321
MboII GAAGA 5 cut(s) 140, 298, 494, 745, 765
MflI RGATCY 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 7 cut(s) 86, 119, 136, 165, 369, 384, 525
MluNI TGGCCA 1 cut(s) 426
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 6 cut(s) 3, 151, 162, 239, 312, 346
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 426
MseI TTAA 8 cut(s) 134, 156, 164, 168, 387, 476, 573, 597
MslI CAYNNNNRTG 4 cut(s) 329, 456, 519, 725
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 3 cut(s) 24, 144, 666
MspR9I CCNGG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 706
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 421
NdeII GATC 2 cut(s) 91, 321
NlaIII CATG 4 cut(s) 19, 85, 202, 724
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 661
NspV TTCGAA 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 519
PacI TTAATTAA 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 369
PkrI GCNGC 5 cut(s) 22, 308, 410, 619, 708
Ppu21I YACGTR 1 cut(s) 634
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 661
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 4 cut(s) 329, 456, 519, 725
SaqAI TTAA 8 cut(s) 134, 156, 164, 168, 387, 476, 573, 597
SatI GCNGC 5 cut(s) 21, 307, 409, 618, 707
Sau3AI GATC 2 cut(s) 91, 321
ScrFI CCNGG 1 cut(s) 519
SfaNI GCATC 4 cut(s) 22, 67, 134, 652
SfuI TTCGAA 1 cut(s) 206
SmiI ATTTAAAT 1 cut(s) 135
SmiMI CAYNNNNRTG 4 cut(s) 329, 456, 519, 725
SnaBI TACGTA 1 cut(s) 634
Sse9I AATT 7 cut(s) 86, 119, 136, 165, 369, 384, 525
SsiI CCGC 3 cut(s) 306, 349, 707
SspI AATATT 1 cut(s) 674
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 2 cut(s) 81, 701
SwaI ATTTAAAT 1 cut(s) 135
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 2 cut(s) 629, 636
TaqI TCGA 1 cut(s) 206
TasI AATT 7 cut(s) 86, 119, 136, 165, 369, 384, 525
TauI GCSGC 2 cut(s) 309, 709
Tru1I TTAA 8 cut(s) 134, 156, 164, 168, 387, 476, 573, 597
Tru9I TTAA 8 cut(s) 134, 156, 164, 168, 387, 476, 573, 597
TscAI CASTG 3 cut(s) 12, 70, 645
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 3 cut(s) 20, 408, 617
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 2 cut(s) 187, 299
TspGWI ACGGA 2 cut(s) 100, 258
TspRI CASTG 3 cut(s) 12, 70, 645
XapI RAATTY 3 cut(s) 119, 136, 369
XmnI GAANNNNTTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.