Rorug07G0041600

Short-chain dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
2926481 .. 2929085
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0041600.1

Sequence Viewer

Length: 750 bp
ATGTCGACGGTGCTTCTCTTGTTGGGGCTTCTTTCTCTGACCCCATTGTTTGCTCATGCTTATGGTGATGGAGGTTGGGTTGATGCTCATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACTATGGGTGGTGCTTGTGGGTATGGAAACCTATACAGCCAAGGGTACGGCACAAACACAGCAGCTCTGAGCACAGCCTTGTTCAACAATGGCTTGAGCTGCGGGGCTTGCTTTGAGATCAAGTGTGTCAATGACCCCAAATGGTGCCTTCCCGGTTCTATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCTCTCCCTAACAACAACGGCGGTTGGTGCAACCCTCCTCAGCATCATTTCGATCTCGCGCAGCCCGTATTTCAGCATATTGCGCAATACAGGGCTGGAATCGTCCCTGTCTCCTACCGAAGGGTACCTTGCCAAAAGAAGGGTGGGGTCAGATTCACAATCAACGGTCACTCATACTTCAATCTGGTCCTAATCACAAACGTGGGTGGTGCTGGTGATGTTCAATCTGTTTCCATCAAAGGGTCAAGAACTGGTTGGCAACCCATGTCTAGGAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTCGACGGCCAAAGCCTCTCATTCAAGGTCACAACCAGTGATGGCCGCACTGTAGTCTCTAACAATGTTGTTCCGGCAGGCTGGTCTTTCGGCCAGACTTTCTCCGGCCTCCAATTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

249

Amino Acids

26.46

Weight (kDa)

8.64

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 30 - 153 4.5e-09 EXPB1-like domain 1
DPBB_1 PF03330 61 - 146 2.2e-22 Lytic transglycolase
Expansin_C PF01357 157 - 234 4.3e-34 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 405
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 2 cut(s) 267, 445
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 380
AciI CCGC 3 cut(s) 225, 342, 673
AcoI YGGCCR 3 cut(s) 634, 670, 718
AfaI GTAC 3 cut(s) 124, 170, 447
AfiI CCNNNNNNNGG 4 cut(s) 441, 460, 561, 591
AgsI TTSAA 4 cut(s) 208, 502, 545, 652
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 2 cut(s) 188, 222
AluI AGCT 2 cut(s) 188, 222
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 436, 688
AoxI GGCC 4 cut(s) 634, 670, 718, 733
ApeKI GCWGC 3 cut(s) 185, 222, 382
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 2 cut(s) 382, 406
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 3 cut(s) 77, 122, 548
AvaII GGWCC 1 cut(s) 508
BanI GGYRCC 2 cut(s) 267, 445
Bbv12I GWGCWC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 197, 209, 394
BccI CCATC 3 cut(s) 62, 563, 662
BceAI ACGGC 3 cut(s) 187, 355, 649
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 436, 688
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 678
BisI GCNGC 4 cut(s) 186, 223, 383, 673
BlsI GCNGC 4 cut(s) 187, 224, 384, 674
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 2 cut(s) 269, 447
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 3 cut(s) 73, 103, 373
BmuI ACTGGG 1 cut(s) 607
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 4 cut(s) 441, 460, 561, 591
Bse1I ACTGG 3 cut(s) 577, 602, 663
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 4 cut(s) 441, 460, 561, 591
BseMII CTCAG 2 cut(s) 182, 374
BseNI ACTGG 3 cut(s) 577, 602, 663
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 3 cut(s) 197, 209, 394
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 4 cut(s) 636, 672, 720, 735
BshNI GGYRCC 2 cut(s) 267, 445
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 3 cut(s) 276, 701, 732
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 4 cut(s) 441, 460, 561, 591
BsmAI GTCTC 2 cut(s) 436, 688
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 4 cut(s) 636, 672, 720, 735
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 240, 373
BspACI CCGC 3 cut(s) 225, 342, 673
BspANI GGCC 4 cut(s) 636, 672, 720, 735
BspCNI CTCAG 2 cut(s) 183, 373
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 269, 447
BspT107I GGYRCC 2 cut(s) 267, 445
BsrI ACTGG 3 cut(s) 577, 602, 663
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 240, 373
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 3 cut(s) 10, 488, 679
BstC8I GCNNGC 2 cut(s) 232, 706
BstDEI CTNAG 2 cut(s) 191, 360
BstENI CCTNNNNNAGG 1 cut(s) 439
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 2 cut(s) 382, 406
BstKTI GATC 2 cut(s) 243, 376
BstMAI GTCTC 2 cut(s) 436, 688
BstMBI GATC 2 cut(s) 240, 373
BstMWI GCNNNNNNNGC 4 cut(s) 222, 231, 348, 403
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 3 cut(s) 197, 209, 394
BsuRI GGCC 4 cut(s) 636, 672, 720, 735
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 291, 670, 675
Cac8I GCNNGC 2 cut(s) 232, 706
CfoI GCGC 2 cut(s) 382, 406
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 123, 169, 446
CviAII CATG 3 cut(s) 56, 89, 586
CviQI GTAC 3 cut(s) 123, 169, 446
DdeI CTNAG 2 cut(s) 191, 360
DpnI GATC 2 cut(s) 242, 375
DpnII GATC 2 cut(s) 240, 373
EaeI YGGCCR 3 cut(s) 634, 670, 718
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 59, 92, 589
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FaqI GGGAC 1 cut(s) 410
FatI CATG 3 cut(s) 55, 88, 585
FauI CCCGC 1 cut(s) 218
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 186, 223, 383, 673
Fsp4HI GCNGC 4 cut(s) 186, 223, 383, 673
FspBI CTAG 1 cut(s) 591
FspI TGCGCA 1 cut(s) 405
GlaI GCGC 2 cut(s) 381, 405
GluI GCNGC 4 cut(s) 186, 223, 383, 673
HaeIII GGCC 4 cut(s) 636, 672, 720, 735
HapII CCGG 3 cut(s) 276, 701, 732
HhaI GCGC 2 cut(s) 382, 406
Hin1II CATG 3 cut(s) 59, 92, 589
Hin6I GCGC 2 cut(s) 380, 404
HinP1I GCGC 2 cut(s) 380, 404
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 420, 474
HpaII CCGG 3 cut(s) 276, 701, 732
HphI GGTGA 3 cut(s) 77, 122, 548
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 39, 192, 473, 606
Hpy188III TCNNGA 1 cut(s) 567
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 10, 635
HpyAV CCTTC 3 cut(s) 281, 435, 454
HpyCH4III ACNGT 3 cut(s) 10, 488, 679
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 231, 348, 403
HpyF3I CTNAG 2 cut(s) 191, 360
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 3 cut(s) 59, 92, 589
HspAI GCGC 2 cut(s) 380, 404
KpnI GGTACC 1 cut(s) 449
Kzo9I GATC 2 cut(s) 240, 373
Lsp1109I GCAGC 3 cut(s) 197, 209, 394
LweI GCATC 3 cut(s) 73, 103, 373
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 289, 488, 655
MalI GATC 2 cut(s) 242, 375
MboI GATC 2 cut(s) 240, 373
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 3 cut(s) 301, 607, 740
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 8 cut(s) 65, 127, 321, 366, 369, 638, 653, 746
MseI TTAA 1 cut(s) 748
MslI CAYNNNNRTG 2 cut(s) 60, 521
MspI CCGG 3 cut(s) 276, 701, 732
MspR9I CCNGG 1 cut(s) 276
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 4 cut(s) 222, 231, 348, 403
NciI CCSGG 1 cut(s) 276
NdeII GATC 2 cut(s) 240, 373
NlaIII CATG 3 cut(s) 59, 92, 589
NlaIV GGNNCC 2 cut(s) 269, 447
NmuCI GTSAC 3 cut(s) 289, 488, 655
NsbI TGCGCA 1 cut(s) 405
OliI CACNNNNGTG 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 2 cut(s) 420, 474
PkrI GCNGC 4 cut(s) 187, 224, 384, 674
PspN4I GGNNCC 2 cut(s) 269, 447
PspPI GGNCC 1 cut(s) 508
RsaI GTAC 3 cut(s) 124, 170, 447
RsaNI GTAC 3 cut(s) 123, 169, 446
RseI CAYNNNNRTG 2 cut(s) 60, 521
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 748
SatI GCNGC 4 cut(s) 186, 223, 383, 673
Sau3AI GATC 2 cut(s) 240, 373
Sau96I GGNCC 1 cut(s) 508
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 197
SetI ASST 8 cut(s) 76, 156, 190, 224, 451, 525, 630, 657
SfaNI GCATC 3 cut(s) 73, 103, 373
SfcI CTRYAG 1 cut(s) 678
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 60, 521
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 3 cut(s) 301, 607, 740
SsiI CCGC 3 cut(s) 225, 342, 673
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 10, 488, 679
TaiI ACGT 1 cut(s) 525
TaqI TCGA 3 cut(s) 5, 372, 630
TasI AATT 3 cut(s) 301, 607, 740
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 2 cut(s) 420, 474
Tru1I TTAA 1 cut(s) 748
Tru9I TTAA 1 cut(s) 748
TscAI CASTG 3 cut(s) 298, 670, 682
TseFI GTSAC 3 cut(s) 289, 488, 655
TseI GCWGC 3 cut(s) 185, 222, 382
Tsp45I GTSAC 3 cut(s) 289, 488, 655
TspRI CASTG 3 cut(s) 298, 670, 682
VpaK11BI GGWCC 1 cut(s) 508
XagI CCTNNNNNAGG 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.