FvH4_7g29900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000238
Physical Location & Seq
Forward (+)
21876819 .. 21880637
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29900.t1

Sequence Viewer

Length: 960 bp
ATGTGGCTGTTCAGAAGAAAAGGCCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTCAAGGGATTGATGCCACTGGTCTTACTGCCATTGTTACAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCCGCTAAAGATGTGAAAGAAGCAATAGTTAAGGACATCCCCACTGCCAAAATTGATGCCATAGAGTTGGACCTCAGTTCAATGTCATCTGTGAGGAAATTTGCATCAGAATTCAAATCCGCTGGCCATCCTCTAAATATCCTAATTAACAATGCAGGGATTATGGCGACCCCGTTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTCATTTTCTGTTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACATTCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTATGCATATCCTGAAGGAATCCGTTTCGACAGAATCAACGATCCATCAGGGTACAGCAGTTGGCCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTCACAAAACAATTCAAGGAAGATGGGACAAACATAACTGCAAATGCACTTCACCCTGGTGTAATTCAAACTAATCTTTTCCGGCATAACAATGTTATTAATGGTAATCACGTCATTAAGGGGCTTGTTAATGTGCTCGGTAGAGTTCTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGCGGCATTGCATCCGCAAGTTAAAGGGGTGAGTGGTGAATATTTTGCAGACAGTAATATTTCGAAGCCAAGACCCCAAGCTGAAGACGAGGTGTTGGCAAAGAAGCTCTGGGATTTCAGCAAGGATTTAACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

320

Amino Acids

34.64

Weight (kDa)

9.42

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 180 2.9e-27 short chain dehydrogenase
KR PF08659 31 - 132 2.3e-08 KR domain
adh_short_C2 PF13561 36 - 240 3.2e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccII CGCG 1 cut(s) 139
AciI CCGC 4 cut(s) 195, 312, 824, 836
AclWI GGATC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 2 cut(s) 290, 302
AcuI CTGAAG 4 cut(s) 380, 531, 555, 924
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 6 cut(s) 273, 307, 392, 474, 649, 701
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 1 cut(s) 688
AleI CACNNNNGTG 1 cut(s) 690
AluBI AGCT 5 cut(s) 515, 607, 611, 902, 928
AluI AGCT 5 cut(s) 515, 607, 611, 902, 928
Alw21I GWGCWC 1 cut(s) 771
AlwI GGATC 1 cut(s) 557
AoxI GGCC 3 cut(s) 22, 316, 584
ApeKI GCWGC 2 cut(s) 191, 806
ApoI RAATTY 2 cut(s) 290, 302
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AseI ATTAAT 1 cut(s) 732
AsiGI ACCGGT 1 cut(s) 519
AspS9I GGNCC 2 cut(s) 23, 262
AsuHPI GGTGA 4 cut(s) 509, 677, 862, 869
AsuII TTCGAA 1 cut(s) 884
AsuNHI GCTAGC 1 cut(s) 607
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BalI TGGCCA 1 cut(s) 318
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 912
Bbv12I GWGCWC 1 cut(s) 771
BbvI GCAGC 2 cut(s) 178, 818
BccI CCATC 4 cut(s) 34, 327, 574, 650
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 2 cut(s) 442, 514
BclI TGATCA 1 cut(s) 168
BfaI CTAG 2 cut(s) 114, 608
BfuI GTATCC 2 cut(s) 442, 514
BisI GCNGC 4 cut(s) 192, 195, 807, 825
BlsI GCNGC 4 cut(s) 193, 196, 808, 826
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 262
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 2 cut(s) 23, 262
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 5 cut(s) 67, 119, 238, 305, 841
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 688
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 827
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 3 cut(s) 228, 319, 832
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 178, 818
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 24, 318, 586
BshNI GGYRCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 2 cut(s) 520, 715
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 673
BsnI GGCC 3 cut(s) 24, 318, 586
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 163, 771
Bsp143I GATC 2 cut(s) 168, 562
BspACI CCGC 4 cut(s) 195, 312, 824, 836
BspANI GGCC 3 cut(s) 24, 318, 586
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 1 cut(s) 557
BspT104I TTCGAA 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 827
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 2 cut(s) 168, 562
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 4 cut(s) 316, 588, 609, 624
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 3 cut(s) 228, 319, 832
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 2 cut(s) 171, 565
BstMBI GATC 2 cut(s) 168, 562
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 178, 818
BstV2I GAAGAC 1 cut(s) 912
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuI GTATCC 2 cut(s) 442, 514
BsuRI GGCC 3 cut(s) 24, 318, 586
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 3 cut(s) 228, 319, 832
BtsI GCAGTG 2 cut(s) 149, 234
BtsIMutI CAGTG 4 cut(s) 81, 126, 149, 234
Cac8I GCNNGC 4 cut(s) 316, 588, 609, 624
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 2 cut(s) 23, 262
Csp6I GTAC 1 cut(s) 574
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 3 cut(s) 164, 172, 623
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 170, 564
DpnII GATC 2 cut(s) 168, 562
DraIII CACNNNGTG 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 4 cut(s) 380, 531, 555, 924
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 688
EcoT22I ATGCAT 1 cut(s) 529
FaeI CATG 3 cut(s) 167, 175, 626
FaqI GGGAC 1 cut(s) 673
FatI CATG 3 cut(s) 163, 171, 622
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 192, 195, 807, 825
FokI GGATG 3 cut(s) 215, 306, 819
Fsp4HI GCNGC 4 cut(s) 192, 195, 807, 825
FspBI CTAG 2 cut(s) 114, 608
GluI GCNGC 4 cut(s) 192, 195, 807, 825
HaeIII GGCC 3 cut(s) 24, 318, 586
HapII CCGG 2 cut(s) 520, 715
Hin1II CATG 3 cut(s) 167, 175, 626
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 2 cut(s) 540, 555
HpaII CCGG 2 cut(s) 520, 715
HphI GGTGA 4 cut(s) 509, 677, 862, 869
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 3 cut(s) 14, 301, 511
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 1 cut(s) 432
HpyAV CCTTC 2 cut(s) 479, 530
HpyCH4III ACNGT 1 cut(s) 875
HpyCH4IV ACGT 1 cut(s) 744
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 3 cut(s) 167, 175, 626
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 2 cut(s) 168, 562
LmnI GCTCC 2 cut(s) 107, 803
Lsp1109I GCAGC 2 cut(s) 178, 818
LweI GCATC 5 cut(s) 67, 119, 238, 305, 841
MaeI CTAG 2 cut(s) 114, 608
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 2 cut(s) 170, 564
MboI GATC 2 cut(s) 168, 562
MboII GAAGA 5 cut(s) 27, 36, 68, 665, 917
MhlI GDGCHC 2 cut(s) 163, 771
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 7 cut(s) 243, 290, 302, 336, 492, 644, 696
MluI ACGCGT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 240, 426
MnlI CCTC 6 cut(s) 174, 275, 279, 333, 517, 904
Mox20I TGGCCA 1 cut(s) 318
Mph1103I ATGCAT 1 cut(s) 529
MscI TGGCCA 1 cut(s) 318
MseI TTAA 8 cut(s) 222, 339, 732, 750, 762, 786, 843, 950
MslI CAYNNNNRTG 4 cut(s) 176, 522, 690, 723
Msp20I TGGCCA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 520, 715
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 139
NdeI CATATG 1 cut(s) 592
NdeII GATC 2 cut(s) 168, 562
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 3 cut(s) 167, 175, 626
NlaIV GGNNCC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 626
NspV TTCGAA 1 cut(s) 884
OliI CACNNNNGTG 1 cut(s) 690
PaeI GCATGC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 540, 555
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 4 cut(s) 193, 196, 808, 826
PshBI ATTAAT 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 23, 262
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 4 cut(s) 176, 522, 690, 723
SaqAI TTAA 8 cut(s) 222, 339, 732, 750, 762, 786, 843, 950
SatI GCNGC 4 cut(s) 192, 195, 807, 825
Sau3AI GATC 2 cut(s) 168, 562
Sau96I GGNCC 2 cut(s) 23, 262
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 2 cut(s) 163, 771
SetI ASST 9 cut(s) 267, 421, 517, 609, 613, 747, 904, 915, 930
SfaNI GCATC 5 cut(s) 67, 119, 238, 305, 841
SfuI TTCGAA 1 cut(s) 884
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 4 cut(s) 176, 522, 690, 723
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 626
Sse9I AATT 7 cut(s) 243, 290, 302, 336, 492, 644, 696
SsiI CCGC 4 cut(s) 195, 312, 824, 836
SspI AATATT 2 cut(s) 863, 880
SspMI CTAG 2 cut(s) 114, 608
StyD4I CCNGG 1 cut(s) 688
TaaI ACNGT 1 cut(s) 875
TaiI ACGT 1 cut(s) 747
TaqI TCGA 2 cut(s) 549, 884
TasI AATT 7 cut(s) 243, 290, 302, 336, 492, 644, 696
TauI GCSGC 2 cut(s) 197, 827
TfiI GAWTC 2 cut(s) 540, 555
Tru1I TTAA 8 cut(s) 222, 339, 732, 750, 762, 786, 843, 950
Tru9I TTAA 8 cut(s) 222, 339, 732, 750, 762, 786, 843, 950
TscAI CASTG 4 cut(s) 88, 133, 156, 241
TseI GCWGC 2 cut(s) 191, 806
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 4 cut(s) 88, 133, 156, 241
VpaK11BI GGWCC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 2 cut(s) 290, 302
XceI RCATGY 1 cut(s) 626
XspI CTAG 2 cut(s) 114, 608
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.