pycom07g25070

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000238
Physical Location & Seq
Reverse (-)
25510056 .. 25510996
941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25070.2

Sequence Viewer

Length: 672 bp
ATGTGTAGGCGACAGCGAGGCACCCACCACCAAAGCAAAGAAAAGAAAACACTACGTCAAAACTCAGTAAAAACCACTTTCCCATCTCTTTGCATGCAGAGAGAGAGTGTGAGAGAGCAGAAGAAGGTGTGGTTCTTCAAAAGAAAAGGGCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTGAAGGGATTGATGCCACTGGTCTCACCGCCATTGTTACAGGAGCATCGAGTGGTATTGGCACCGAAACCGCACGCGTTCTTGCACTGTGTGGCGCCCATGTGGTTACGGCAATGAGGAACATGGCTGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATCCCCACTGCCAAAGTTGATGCCATGGAATTGGATCTCAGTTCGTTATCATCCGTTAGGAAATTCGCATCGGATTTCAATTCCTCCGGTCTTCCTCTTAACATTTTAATTAACAATGCAGGAGTTATGGGAACCCCTTTCATGCTTTCGAAGGACAAGATTGAACTTCAGTTCGCCATAAACCACGTAGGTATGTTGCATTTGTTACTCTGTCAAACTGGCAGTTTAAAGTACAAACAGCAACAACCACAACAGCCAACCCTTATCGTACTAAGTAGGGTCGGCTGTATGAATCCTAGAATGCCATTAACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

224

Amino Acids

24.34

Weight (kDa)

9.89

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 20, 251, 284
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 219, 261
AclWI GGATC 1 cut(s) 396
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 2 cut(s) 213, 506
AcyI GRCGYC 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 281
AfaI GTAC 2 cut(s) 587, 624
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 3 cut(s) 139, 433, 518
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 396
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 503
BanI GGYRCC 3 cut(s) 20, 251, 284
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 91, 160
BceAI ACGGC 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 4 cut(s) 22, 253, 286, 487
BmsI GCATC 5 cut(s) 193, 245, 319, 364, 431
BpiI GAAGAC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 214, 577
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 78, 406
BseNI ACTGG 2 cut(s) 214, 577
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 3 cut(s) 20, 251, 284
BsiSI CCGG 2 cut(s) 321, 441
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 660
BsnI GGCC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 503
Bsp143I GATC 1 cut(s) 388
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 219, 261
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 77, 405
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 4 cut(s) 22, 253, 286, 487
BspPI GGATC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 3 cut(s) 20, 251, 284
BspTNI GGTCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 2 cut(s) 214, 577
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 1 cut(s) 388
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 279, 667
BstACI GRCGYC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 541
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 95, 265
BstDEI CTNAG 3 cut(s) 64, 392, 626
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 388
BstNSI RCATGY 1 cut(s) 97
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 404
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 3 cut(s) 207, 275, 360
Cac8I GCNNGC 2 cut(s) 95, 265
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 586, 623
CviAII CATG 5 cut(s) 94, 290, 313, 379, 496
CviJI RGCY 4 cut(s) 151, 317, 610, 639
CviKI_1 RGCY 4 cut(s) 151, 317, 610, 639
CviQI GTAC 2 cut(s) 586, 623
DdeI CTNAG 3 cut(s) 64, 392, 626
DinI GGCGCC 1 cut(s) 286
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
DraI TTTAAA 1 cut(s) 582
DraIII CACNNNGTG 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 213, 506
EcoT14I CCWWGG 1 cut(s) 378
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 97, 293, 316, 382, 499
FaiI YATR 9 cut(s) 95, 291, 314, 380, 482, 497, 533, 548, 644
FatI CATG 5 cut(s) 93, 289, 312, 378, 495
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 651
GlaI GCGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 1 cut(s) 151
HapII CCGG 2 cut(s) 321, 441
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 5 cut(s) 97, 293, 316, 382, 499
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 1 cut(s) 646
HpaII CCGG 2 cut(s) 321, 441
HphI GGTGA 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 427
HpyAV CCTTC 4 cut(s) 118, 188, 343, 499
HpyCH4III ACNGT 2 cut(s) 279, 667
HpyCH4IV ACGT 2 cut(s) 55, 540
HpyCH4V TGCA 6 cut(s) 93, 97, 275, 332, 473, 553
HpyF3I CTNAG 3 cut(s) 64, 392, 626
HpySE526I ACGT 2 cut(s) 55, 540
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 5 cut(s) 97, 293, 316, 382, 499
HspAI GCGC 1 cut(s) 285
KasI GGCGCC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 7 cut(s) 141, 195, 216, 334, 454, 459, 558
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 5 cut(s) 193, 245, 319, 364, 431
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 55, 540
MaeIII GTNAC 4 cut(s) 187, 226, 295, 558
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 5 cut(s) 127, 133, 162, 194, 437
MflI RGATCY 1 cut(s) 388
MluCI AATT 4 cut(s) 383, 416, 433, 462
MluI ACGCGT 1 cut(s) 265
Mly113I GGCGCC 1 cut(s) 285
MnlI CCTC 4 cut(s) 11, 300, 448, 459
MseI TTAA 6 cut(s) 453, 461, 465, 581, 662, 670
MspI CCGG 2 cut(s) 321, 441
Mva1269I GAATGC 1 cut(s) 660
MvnI CGCG 1 cut(s) 267
NarI GGCGCC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 378
NdeII GATC 1 cut(s) 388
NlaIII CATG 5 cut(s) 97, 293, 316, 382, 499
NlaIV GGNNCC 4 cut(s) 22, 253, 286, 487
NspI RCATGY 1 cut(s) 97
NspV TTCGAA 1 cut(s) 503
PacI TTAATTAA 1 cut(s) 465
PaeI GCATGC 1 cut(s) 97
PctI GAATGC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 646
PkrI GCNGC 1 cut(s) 319
PluTI GGCGCC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 22, 253, 286, 487
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 2 cut(s) 587, 624
RsaNI GTAC 2 cut(s) 586, 623
SaqAI TTAA 6 cut(s) 453, 461, 465, 581, 662, 670
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 1 cut(s) 149
SetI ASST 4 cut(s) 58, 129, 543, 547
SfaNI GCATC 5 cut(s) 193, 245, 319, 364, 431
SfoI GGCGCC 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 503
SphI GCATGC 1 cut(s) 97
Sse9I AATT 4 cut(s) 383, 416, 433, 462
SsiI CCGC 2 cut(s) 219, 261
SspDI GGCGCC 1 cut(s) 284
SspMI CTAG 1 cut(s) 651
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 279, 667
TaiI ACGT 2 cut(s) 58, 543
TaqI TCGA 2 cut(s) 239, 503
TasI AATT 4 cut(s) 383, 416, 433, 462
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 6 cut(s) 453, 461, 465, 581, 662, 670
Tru9I TTAA 6 cut(s) 453, 461, 465, 581, 662, 670
TscAI CASTG 3 cut(s) 214, 282, 367
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 484, 659
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 3 cut(s) 214, 282, 367
XapI RAATTY 1 cut(s) 416
XceI RCATGY 1 cut(s) 97
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.