pycom07g25060

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000238
Physical Location & Seq
Forward (+)
25494422 .. 25495956
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25060.2

Sequence Viewer

Length: 561 bp
ATGCTTTCGAAGGACAAGATCGAACTTCAGTTCGCGACAAACCACGTAGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAGCACGCAAAAGCGGCAAAGAAGGGAGAATCGTAAATGTGTCCTCAGAAGGTCACCGCTACCCGTATCCTGAAGGAATTCGTTTTGATAAAATTAACGACCAAGAAGGGTACAGCATCTTTCGTGCATATTTCCAATCGAAGCTTGCTAACATTTTGCACGCTAATGAGCTTGCAAGACGCTTAAAGGAAGAAGGAGCAGCTATAACTGCAAACTCACTTCACCCTGGTGCAATTGTTACCAGTCTGTTTCGTTATAACAGCGCTGTTAACGTGCTTGGTAGAGCTCTGTTTAAAAATGTTAAGCAGGGAGCTGCAACGACGTGCTATGTGGCACTGCATCCACAAGTCGAGGGGGTGACGGGCGAATATTTTTCGGACAGTAACCTATCCAAGCCAAGTCGACAAGGTCAAGACGCGGAGATGGCAAAGAAACTATGGGATTTCACCATGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

187

Amino Acids

20.83

Weight (kDa)

9.38

Isoelectric Point (pI)

24.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccI GTMKAC 1 cut(s) 496
AccII CGCG 2 cut(s) 35, 512
AciI CCGC 3 cut(s) 108, 151, 512
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 2 cut(s) 11, 186
AfaI GTAC 1 cut(s) 206
AfeI AGCGCT 1 cut(s) 358
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 1 cut(s) 319
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 5 cut(s) 238, 265, 296, 380, 407
AluI AGCT 5 cut(s) 238, 265, 296, 380, 407
Alw21I GWGCWC 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 293, 407
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 359
AsuHPI GGTGA 4 cut(s) 140, 308, 463, 532
AsuII TTCGAA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 305, 394
BccI CCATC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 2 cut(s) 73, 171
BfoI RGCGCY 1 cut(s) 360
BfuI GTATCC 2 cut(s) 73, 171
BisI GCNGC 3 cut(s) 109, 294, 408
BlsI GCNGC 3 cut(s) 110, 295, 409
Bme1390I CCNGG 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 219, 442
Bpu14I TTCGAA 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 319, 543
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 319, 543
BseGI GGATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 305, 394
Bsh1236I CGCG 2 cut(s) 35, 512
BsiHKAI GWGCWC 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 543
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 3 cut(s) 108, 151, 512
BspCNI CTCAG 1 cut(s) 152
BspFNI CGCG 2 cut(s) 35, 512
BspT104I TTCGAA 1 cut(s) 8
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 319, 543
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 476
BstBAI YACGTR 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 4 cut(s) 100, 240, 255, 267
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 543
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 2 cut(s) 35, 512
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 108, 302, 518
BstNI CCWGG 1 cut(s) 321
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 319
BstUI CGCG 2 cut(s) 35, 512
BstV1I GCAGC 2 cut(s) 305, 394
BsuI GTATCC 2 cut(s) 73, 171
BtgI CCRYGG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 428
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 4 cut(s) 100, 240, 255, 267
CfoI GCGC 1 cut(s) 359
CseI GACGC 2 cut(s) 282, 518
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 544
CviJI RGCY 6 cut(s) 238, 265, 296, 380, 407, 490
CviKI_1 RGCY 6 cut(s) 238, 265, 296, 380, 407, 490
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 139
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraI TTTAAA 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 382
Eco47III AGCGCT 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 380
Eco57I CTGAAG 2 cut(s) 11, 186
Eco91I GGTNACC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 380
EcoO65I GGTNACC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 1 cut(s) 547
FaiI YATR 7 cut(s) 86, 223, 299, 351, 423, 532, 545
FatI CATG 1 cut(s) 543
FblI GTMKAC 1 cut(s) 496
Fnu4HI GCNGC 3 cut(s) 109, 294, 408
FokI GGATG 1 cut(s) 420
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 3 cut(s) 109, 294, 408
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 109, 294, 408
HaeII RGCGCY 1 cut(s) 360
HgaI GACGC 2 cut(s) 282, 518
HhaI GCGC 1 cut(s) 359
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 2 cut(s) 364, 497
HindII GTYRAC 2 cut(s) 364, 497
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 123
HpaI GTTAAC 1 cut(s) 364
HphI GGTGA 4 cut(s) 140, 308, 463, 532
Hpy166II GTNNAC 2 cut(s) 364, 497
Hpy188I TCNGA 2 cut(s) 142, 472
Hpy188III TCNNGA 3 cut(s) 34, 164, 506
Hpy8I GTNNAC 2 cut(s) 364, 497
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 6 cut(s) 4, 110, 137, 161, 194, 281
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 3 cut(s) 45, 366, 416
HpyCH4V TGCA 7 cut(s) 221, 253, 269, 305, 326, 410, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 302, 518
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 3 cut(s) 45, 366, 416
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 357
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 290, 404
LpnPI CCDG 5 cut(s) 177, 306, 333, 349, 386
Lsp1109I GCAGC 2 cut(s) 305, 394
LweI GCATC 2 cut(s) 219, 442
MaeII ACGT 3 cut(s) 45, 366, 416
MaeIII GTNAC 4 cut(s) 146, 331, 451, 476
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 100, 296
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 3 cut(s) 171, 186, 327
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 148, 439
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 5 cut(s) 189, 278, 363, 387, 396
MslI CAYNNNNRTG 2 cut(s) 258, 321
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 2 cut(s) 35, 512
MwoI GCNNNNNNNGC 3 cut(s) 108, 302, 518
NcoI CCATGG 1 cut(s) 543
NdeII GATC 1 cut(s) 18
NlaIII CATG 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 146, 451
NruI TCGCGA 1 cut(s) 35
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 501
PkrI GCNGC 3 cut(s) 110, 295, 409
Ppu21I YACGTR 1 cut(s) 46
PsiI TTATAA 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 319
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 501
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 2 cut(s) 258, 321
SacI GAGCTC 1 cut(s) 382
SalI GTCGAC 1 cut(s) 495
SaqAI TTAA 5 cut(s) 189, 278, 363, 387, 396
SatI GCNGC 3 cut(s) 109, 294, 408
Sau3AI GATC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 2 cut(s) 219, 442
SfuI TTCGAA 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 258, 321
Sse9I AATT 3 cut(s) 171, 186, 327
SsiI CCGC 3 cut(s) 108, 151, 512
SspI AATATT 1 cut(s) 464
SstI GAGCTC 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 3 cut(s) 48, 369, 419
TaqI TCGA 5 cut(s) 8, 21, 233, 444, 496
TasI AATT 3 cut(s) 171, 186, 327
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 5 cut(s) 189, 278, 363, 387, 396
Tru9I TTAA 5 cut(s) 189, 278, 363, 387, 396
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 2 cut(s) 146, 451
TseI GCWGC 2 cut(s) 293, 407
Tsp45I GTSAC 2 cut(s) 146, 451
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 435
Tth111I GACNNNGTC 1 cut(s) 501
XapI RAATTY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.