MD07G1274400.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000238
Physical Location & Seq
Forward (+)
33983384 .. 33985082
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1274400.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGGAACCCCTTTCACGCCTTCGAAGGACAAGATCGAACTTCAGTTCGCCACAAACCACGTAGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAGCACGCAAAAGAGGCAAAGAAGGGAGAATCGTAAATGTGTCCTCAGAAGCTCACCGCAACCCGTATCCTGAAGGAATTCGTTTTGATAAAATTAACGACCAAGCAGGCGGGTGGAGCTTAAGCAAGAAAGTTTGGAATTGGATTTTGATGCCATATCAGTACAGCAGCTTTCGTGCATATGGCCAATCAAAGCTTGCTAACATATTGCATGCTAATGAGCTTGCAAGACGCTTAAAGGAAAAAGGAGCTGATATTACTGCAAACTCGCTTCACCCTGGTGCAATTGTTACCAATCTGTTTCGGCTTGTTAACGTGCTTGGTAGAGCTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACGACGTGCTACGTGGCACTGCATCCACAAGTCATGGGGGTGACCAGTGAATATTTCTCGGACTGTAACCTATCCAAGCCAAGGCCACAAGGTCAAGACGTGGAGATGGCAAAGAAACTATGGGATTTTAGCATGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

206

Amino Acids

23.06

Weight (kDa)

9.75

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 9 - 62 2.6e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 166, 219
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 2 cut(s) 26, 201
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 549
AflII CTTAAG 1 cut(s) 229
AjiI CACGTC 2 cut(s) 474, 568
AjnI CCWGG 1 cut(s) 385
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 7 cut(s) 161, 228, 279, 304, 331, 359, 437
AluI AGCT 7 cut(s) 161, 228, 279, 304, 331, 359, 437
AoxI GGCC 2 cut(s) 292, 551
ApeKI GCWGC 2 cut(s) 276, 464
ApoI RAATTY 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 155, 374, 520
AsuII TTCGAA 1 cut(s) 23
BalI TGGCCA 1 cut(s) 294
BbvI GCAGC 2 cut(s) 288, 476
BccI CCATC 1 cut(s) 568
BciT130I CCWGG 1 cut(s) 387
BciVI GTATCC 2 cut(s) 88, 186
BfrI CTTAAG 1 cut(s) 229
BfuI GTATCC 2 cut(s) 88, 186
BisI GCNGC 2 cut(s) 277, 465
BlsI GCNGC 2 cut(s) 278, 466
Bme1390I CCNGG 1 cut(s) 387
BmgBI CACGTC 2 cut(s) 474, 568
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 249, 499
Bpu14I TTCGAA 1 cut(s) 23
BsaAI YACGTR 2 cut(s) 61, 481
BsaJI CCNNGG 2 cut(s) 385, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 385, 548
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 513
BseXI GCAGC 2 cut(s) 288, 476
BshFI GGCC 2 cut(s) 294, 553
BslI CCNNNNNNNGG 1 cut(s) 549
BsnI GGCC 2 cut(s) 294, 553
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 2 cut(s) 166, 219
BspANI GGCC 2 cut(s) 294, 553
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 385, 548
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 533
BstAFI CTTAAG 1 cut(s) 229
BstBAI YACGTR 2 cut(s) 61, 481
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 5 cut(s) 115, 217, 306, 321, 333
BstDEI CTNAG 1 cut(s) 154
BstEII GGTNACC 1 cut(s) 508
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 123, 225
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 288, 476
BsuI GTATCC 2 cut(s) 88, 186
BsuRI GGCC 2 cut(s) 294, 553
BtrI CACGTC 2 cut(s) 474, 568
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 2 cut(s) 485, 520
Cac8I GCNNGC 5 cut(s) 115, 217, 306, 321, 333
CseI GACGC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 320, 502, 601
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 548
Eco57I CTGAAG 2 cut(s) 26, 201
Eco91I GGTNACC 1 cut(s) 508
EcoO65I GGTNACC 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 3 cut(s) 323, 505, 604
FaiI YATR 9 cut(s) 101, 265, 289, 291, 314, 321, 503, 589, 602
FatI CATG 3 cut(s) 319, 501, 600
FauI CCCGC 1 cut(s) 212
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 277, 465
FokI GGATG 1 cut(s) 477
Fsp4HI GCNGC 2 cut(s) 277, 465
GluI GCNGC 2 cut(s) 277, 465
HaeIII GGCC 2 cut(s) 294, 553
HgaI GACGC 1 cut(s) 348
Hin1II CATG 3 cut(s) 323, 505, 604
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 138
HpaI GTTAAC 1 cut(s) 421
HphI GGTGA 3 cut(s) 155, 374, 520
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 2 cut(s) 157, 529
Hpy188III TCNNGA 2 cut(s) 179, 563
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 4 cut(s) 19, 30, 125, 176
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 5 cut(s) 60, 423, 473, 480, 567
HpyCH4V TGCA 6 cut(s) 287, 319, 335, 371, 392, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 225
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 5 cut(s) 60, 423, 473, 480, 567
Hsp92II CATG 3 cut(s) 323, 505, 604
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 3 cut(s) 225, 356, 461
LpnPI CCDG 6 cut(s) 192, 201, 372, 399, 443, 526
Lsp1109I GCAGC 2 cut(s) 288, 476
LweI GCATC 2 cut(s) 249, 499
MaeII ACGT 5 cut(s) 60, 423, 473, 480, 567
MaeIII GTNAC 3 cut(s) 397, 508, 533
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 4 cut(s) 186, 201, 247, 393
MluNI TGGCCA 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 2 cut(s) 116, 163
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 294
MseI TTAA 5 cut(s) 204, 230, 344, 420, 444
MslI CAYNNNNRTG 3 cut(s) 324, 387, 506
Msp20I TGGCCA 1 cut(s) 294
MspCI CTTAAG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 387
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 123, 225
NdeI CATATG 1 cut(s) 289
NdeII GATC 1 cut(s) 33
NlaIII CATG 3 cut(s) 323, 505, 604
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 323
NspV TTCGAA 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 387
PaeI GCATGC 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 278, 466
Ppu21I YACGTR 2 cut(s) 61, 481
Psp6I CCWGG 1 cut(s) 385
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 3 cut(s) 324, 387, 506
SaqAI TTAA 5 cut(s) 204, 230, 344, 420, 444
SatI GCNGC 2 cut(s) 277, 465
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 387
SfaNI GCATC 2 cut(s) 249, 499
SfuI TTCGAA 1 cut(s) 23
SmiMI CAYNNNNRTG 3 cut(s) 324, 387, 506
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SphI GCATGC 1 cut(s) 323
Sse9I AATT 4 cut(s) 186, 201, 247, 393
SsiI CCGC 2 cut(s) 166, 219
SspI AATATT 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 5 cut(s) 63, 426, 476, 483, 570
TaqI TCGA 2 cut(s) 23, 36
TasI AATT 4 cut(s) 186, 201, 247, 393
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 5 cut(s) 204, 230, 344, 420, 444
Tru9I TTAA 5 cut(s) 204, 230, 344, 420, 444
TscAI CASTG 2 cut(s) 492, 520
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 2 cut(s) 276, 464
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 2 cut(s) 492, 520
Vha464I CTTAAG 1 cut(s) 229
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.