MD07G1274700.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000238
Physical Location & Seq
Forward (+)
34009678 .. 34011378
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1274700.v1.1.491

Sequence Viewer

Length: 588 bp
ATGGGAACCCCTTTCACGCCTTCGAAGGACAAGATCGAACTTCAGTTCGCCACAAACCACGTAGGTCATTTTCTTTTGACAAATCTTTTGTTTGATACTATGAAGAAAACAGCACGCAAAAGCGGCAAAGAAGGGAGAATCATAAATGTGTCCTCAGAAGCTCACCGCAACCCGTATCCTGAAGGAATTCGTTTTGATAAAATTAACGACCAAGCAGGGTACAGCAGCTTTCGTGCATATGGCCAATCAAAGCTTGCTAACATTTTGCATGCTAATGAGCTTGCAAGACGCTTAAAGGAAGAAGGAGCAGATATAACCGCAAACTCGCTTCACCCTGGTGCAATTGTTACCAATCTGTTTCGTTATTACAGCATTATTAACGGGCTTGTTAATGTGCTTGGTAGAACTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACGACGTGCTACGCGGCACTGCATCCCCAAGTCAAGGGGGTGACCGGCGAATATTTCTCGGACTGTAACCTATCCAAGCCAAGGCCACAAGGTCAAGACGTGGAGATGGCAAAGAAACTATGGGATTTTAGCATGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

196

Amino Acids

21.7

Weight (kDa)

9.41

Isoelectric Point (pI)

22.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 9 - 62 7.2e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 452
AciI CCGC 4 cut(s) 123, 166, 318, 452
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 2 cut(s) 26, 201
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 472, 519
AjiI CACGTC 2 cut(s) 444, 538
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 336
AluBI AGCT 4 cut(s) 161, 228, 253, 280
AluI AGCT 4 cut(s) 161, 228, 253, 280
AoxI GGCC 2 cut(s) 241, 521
ApeKI GCWGC 2 cut(s) 225, 434
ApoI RAATTY 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 155, 323, 490
AsuII TTCGAA 1 cut(s) 23
BalI TGGCCA 1 cut(s) 243
BbvI GCAGC 2 cut(s) 237, 446
BccI CCATC 1 cut(s) 538
BciT130I CCWGG 1 cut(s) 336
BciVI GTATCC 1 cut(s) 186
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 4 cut(s) 124, 226, 435, 453
BlsI GCNGC 4 cut(s) 125, 227, 436, 454
Bme1390I CCNGG 1 cut(s) 336
BmgBI CACGTC 2 cut(s) 444, 538
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 469
Bpu14I TTCGAA 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 334, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 519
Bse118I RCCGGY 1 cut(s) 482
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 334, 518
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 472, 519
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 237, 446
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 243, 523
BsiSI CCGG 1 cut(s) 483
BslI CCNNNNNNNGG 2 cut(s) 472, 519
BsnI GGCC 2 cut(s) 243, 523
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 4 cut(s) 123, 166, 318, 452
BspANI GGCC 2 cut(s) 243, 523
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 334, 518
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 409, 503
BstBAI YACGTR 1 cut(s) 61
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 4 cut(s) 115, 255, 270, 282
BstDEI CTNAG 1 cut(s) 154
BstEII GGTNACC 1 cut(s) 478
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 452
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 237, 446
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 243, 523
BtrI CACGTC 2 cut(s) 444, 538
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 4 cut(s) 115, 255, 270, 282
Cfr10I RCCGGY 1 cut(s) 482
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 269, 571
CviJI RGCY 8 cut(s) 161, 228, 243, 253, 280, 385, 517, 523
CviKI_1 RGCY 8 cut(s) 161, 228, 243, 253, 280, 385, 517, 523
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 518
Eco57I CTGAAG 2 cut(s) 26, 201
Eco91I GGTNACC 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 518
FaeI CATG 2 cut(s) 272, 574
FaiI YATR 8 cut(s) 101, 143, 238, 240, 270, 314, 559, 572
FatI CATG 2 cut(s) 268, 570
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 124, 226, 435, 453
FokI GGATG 1 cut(s) 447
Fsp4HI GCNGC 4 cut(s) 124, 226, 435, 453
GluI GCNGC 4 cut(s) 124, 226, 435, 453
HaeIII GGCC 2 cut(s) 243, 523
HapII CCGG 1 cut(s) 483
HgaI GACGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 272, 574
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 483
HphI GGTGA 3 cut(s) 155, 323, 490
Hpy188I TCNGA 2 cut(s) 157, 499
Hpy188III TCNNGA 2 cut(s) 179, 533
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 5 cut(s) 19, 30, 125, 176, 296
HpyCH4III ACNGT 2 cut(s) 409, 503
HpyCH4IV ACGT 3 cut(s) 60, 443, 537
HpyCH4V TGCA 5 cut(s) 236, 268, 284, 341, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 3 cut(s) 60, 443, 537
Hsp92II CATG 2 cut(s) 272, 574
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 305, 431
LpnPI CCDG 6 cut(s) 192, 201, 321, 348, 413, 496
Lsp1109I GCAGC 2 cut(s) 237, 446
LweI GCATC 1 cut(s) 469
MaeII ACGT 3 cut(s) 60, 443, 537
MaeIII GTNAC 3 cut(s) 346, 478, 503
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 115, 311
MfeI CAATTG 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 3 cut(s) 186, 201, 342
MluNI TGGCCA 1 cut(s) 243
MnlI CCTC 1 cut(s) 163
Mox20I TGGCCA 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 243
MseI TTAA 5 cut(s) 204, 293, 378, 390, 414
MslI CAYNNNNRTG 3 cut(s) 146, 273, 336
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 33
NlaIII CATG 2 cut(s) 272, 574
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 1 cut(s) 272
NspV TTCGAA 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 336
PaeI GCATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 4 cut(s) 125, 227, 436, 454
Ppu21I YACGTR 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 334
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 3 cut(s) 146, 273, 336
SaqAI TTAA 5 cut(s) 204, 293, 378, 390, 414
SatI GCNGC 4 cut(s) 124, 226, 435, 453
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 336
SfaNI GCATC 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 23
SmiMI CAYNNNNRTG 3 cut(s) 146, 273, 336
SphI GCATGC 1 cut(s) 272
Sse9I AATT 3 cut(s) 186, 201, 342
SsiI CCGC 4 cut(s) 123, 166, 318, 452
SspI AATATT 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 518
TaaI ACNGT 2 cut(s) 409, 503
TaiI ACGT 3 cut(s) 63, 446, 540
TaqI TCGA 2 cut(s) 23, 36
TasI AATT 3 cut(s) 186, 201, 342
TauI GCSGC 2 cut(s) 126, 455
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 5 cut(s) 204, 293, 378, 390, 414
Tru9I TTAA 5 cut(s) 204, 293, 378, 390, 414
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 225, 434
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 462
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.