RLG00000026490

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
3369242 .. 3372483
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026490

Sequence Viewer

Length: 921 bp
ATGCTGGTTCAGGTTGAAACTTTGGCTTTGTCCTACATCAATGCTTTTACTCAGTCTGCTCTGGTTTCTTTCAGATCAATAGTTGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCATGGTGCCCATGTGATTATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGAAGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTCAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACACATCTGCTGGTCATCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCACCTAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTTCAAGTAGCAAACAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACAGGTTTCCATATCGTGAAGGAATCCGTTTTGATAAAATCAACGACCTATCGGGGTACAGCAGTTGGGCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAATTAAAGGAAGACGGGGCAAATATAACTGCAAACGCACTTCACCCTGGTGTAATTCTCACCAATCTTTTCCGTCATAGCAATGTTTTAAATGGGCTTGTTAATCTGTTCGGTAAACTTGTGCTTAAAAATGCTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCATTGCATCCACAAGCTGAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAACATCCCAAGCCGAAGACGAGTTGTTGGCAAAGAAACTCTGGGATTTCAGCAAGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

33.23

Weight (kDa)

9.13

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 27 - 171 4.4e-24 short chain dehydrogenase
KR PF08659 27 - 125 7.7e-07 KR domain
adh_short_C2 PF13561 29 - 274 1.2e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 816
AccII CGCG 1 cut(s) 118
AciI CCGC 2 cut(s) 173, 816
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 3 cut(s) 359, 510, 825
AfaI GTAC 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 4 cut(s) 17, 371, 453, 618
AjnI CCWGG 1 cut(s) 667
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 4 cut(s) 494, 586, 590, 803
AluI AGCT 4 cut(s) 494, 586, 590, 803
AlwI GGATC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 170, 566, 767
ApoI RAATTY 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AspA2I CCTAGG 1 cut(s) 394
AsuHPI GGTGA 4 cut(s) 656, 673, 823, 830
AsuNHI GCTAGC 1 cut(s) 586
AvrII CCTAGG 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 142
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
BanI GGYRCC 1 cut(s) 137
BbsI GAAGAC 2 cut(s) 639, 873
BbvI GCAGC 3 cut(s) 157, 553, 779
BciT130I CCWGG 1 cut(s) 669
BciVI GTATCC 2 cut(s) 421, 493
BfaI CTAG 3 cut(s) 93, 395, 587
BfuI GTATCC 2 cut(s) 421, 493
BisI GCNGC 3 cut(s) 171, 567, 768
BlnI CCTAGG 1 cut(s) 394
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 3 cut(s) 172, 568, 769
Bme1390I CCNGG 1 cut(s) 669
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 669
BmsI GCATC 4 cut(s) 98, 217, 284, 802
BmtI GCTAGC 1 cut(s) 590
BpiI GAAGAC 2 cut(s) 639, 873
Bpu1102I GCTNAGC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 231, 394, 667
Bse3DI GCAATG 2 cut(s) 709, 788
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 3 cut(s) 231, 394, 667
BseGI GGATG 3 cut(s) 298, 793, 854
BseMI GCAATG 2 cut(s) 709, 788
BseMII CTCAG 3 cut(s) 65, 259, 770
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 3 cut(s) 157, 553, 779
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 74, 241
Bsp1720I GCTNAGC 1 cut(s) 756
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 2 cut(s) 173, 816
BspCNI CTCAG 3 cut(s) 64, 258, 769
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 590
BspPI GGATC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 816
BsrDI GCAATG 2 cut(s) 709, 788
BssECI CCNNGG 3 cut(s) 231, 394, 667
BssMI GATC 2 cut(s) 74, 241
BssT1I CCWWGG 2 cut(s) 231, 394
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 1 cut(s) 836
BstC8I GCNNGC 2 cut(s) 588, 603
BstDEI CTNAG 3 cut(s) 51, 245, 756
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 298, 793, 854
BstFNI CGCG 1 cut(s) 118
BstKTI GATC 2 cut(s) 77, 244
BstMBI GATC 2 cut(s) 74, 241
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 667
BstSLI GKGCMC 1 cut(s) 142
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 157, 553, 779
BstV2I GAAGAC 2 cut(s) 639, 873
BstX2I RGATCY 1 cut(s) 241
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 241
BsuI GTATCC 2 cut(s) 421, 493
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 298, 793, 854
BtsI GCAGTG 2 cut(s) 128, 213
BtsIMutI CAGTG 3 cut(s) 105, 128, 213
Cac8I GCNNGC 2 cut(s) 588, 603
Csp6I GTAC 1 cut(s) 553
CviAII CATG 4 cut(s) 134, 143, 232, 602
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 3 cut(s) 51, 245, 756
DpnI GATC 2 cut(s) 76, 243
DpnII GATC 2 cut(s) 74, 241
DraI TTTAAA 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 231, 394
Eco57I CTGAAG 3 cut(s) 359, 510, 825
EcoRII CCWGG 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 231, 394
ErhI CCWWGG 2 cut(s) 231, 394
FaeI CATG 4 cut(s) 137, 146, 235, 605
FatI CATG 4 cut(s) 133, 142, 231, 601
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 3 cut(s) 171, 567, 768
FokI GGATG 3 cut(s) 285, 780, 841
Fsp4HI GCNGC 3 cut(s) 171, 567, 768
FspBI CTAG 3 cut(s) 93, 395, 587
GluI GCNGC 3 cut(s) 171, 567, 768
Hin1II CATG 4 cut(s) 137, 146, 235, 605
HinfI GANTC 1 cut(s) 519
HphI GGTGA 4 cut(s) 656, 673, 823, 830
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 4 cut(s) 74, 280, 490, 832
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 1 cut(s) 737
HpyAV CCTTC 2 cut(s) 509, 800
HpyCH4III ACNGT 1 cut(s) 836
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 9 cut(s) 128, 133, 275, 326, 446, 569, 601, 653, 793
HpyF3I CTNAG 3 cut(s) 51, 245, 756
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 4 cut(s) 137, 146, 235, 605
Kzo9I GATC 2 cut(s) 74, 241
LmnI GCTCC 2 cut(s) 86, 764
LpnPI CCDG 8 cut(s) 47, 279, 312, 484, 654, 681, 746, 877
Lsp1109I GCAGC 3 cut(s) 157, 553, 779
LweI GCATC 4 cut(s) 98, 217, 284, 802
MaeI CTAG 3 cut(s) 93, 395, 587
MaeII ACGT 1 cut(s) 448
MalI GATC 2 cut(s) 76, 243
MbiI CCGCTC 1 cut(s) 816
MboI GATC 2 cut(s) 74, 241
MboII GAAGA 2 cut(s) 644, 878
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 7 cut(s) 222, 269, 315, 330, 471, 623, 675
MluI ACGCGT 1 cut(s) 116
MmeI TCCRAC 3 cut(s) 64, 219, 405
MnlI CCTC 4 cut(s) 153, 258, 312, 496
MseI TTAA 7 cut(s) 201, 314, 318, 626, 710, 723, 747
MslI CAYNNNNRTG 2 cut(s) 669, 702
MspR9I CCNGG 1 cut(s) 669
MvaI CCWGG 1 cut(s) 669
MvnI CGCG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 571
NdeII GATC 2 cut(s) 74, 241
NheI GCTAGC 1 cut(s) 586
NlaIII CATG 4 cut(s) 137, 146, 235, 605
NlaIV GGNNCC 1 cut(s) 139
NspI RCATGY 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 669
PacI TTAATTAA 1 cut(s) 318
PaeI GCATGC 1 cut(s) 605
PfeI GAWTC 1 cut(s) 519
PkrI GCNGC 3 cut(s) 172, 568, 769
Psp6I CCWGG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 2 cut(s) 669, 702
SaqAI TTAA 7 cut(s) 201, 314, 318, 626, 710, 723, 747
SatI GCNGC 3 cut(s) 171, 567, 768
Sau3AI GATC 2 cut(s) 74, 241
ScrFI CCNGG 1 cut(s) 669
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 4 cut(s) 98, 217, 284, 802
SmiMI CAYNNNNRTG 2 cut(s) 669, 702
SphI GCATGC 1 cut(s) 605
Sse9I AATT 7 cut(s) 222, 269, 315, 330, 471, 623, 675
SsiI CCGC 2 cut(s) 173, 816
SspI AATATT 2 cut(s) 824, 841
SspMI CTAG 3 cut(s) 93, 395, 587
StyD4I CCNGG 1 cut(s) 667
StyI CCWWGG 2 cut(s) 231, 394
TaaI ACNGT 1 cut(s) 836
TaiI ACGT 1 cut(s) 451
TasI AATT 7 cut(s) 222, 269, 315, 330, 471, 623, 675
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 7 cut(s) 201, 314, 318, 626, 710, 723, 747
Tru9I TTAA 7 cut(s) 201, 314, 318, 626, 710, 723, 747
TscAI CASTG 3 cut(s) 112, 135, 220
TseI GCWGC 3 cut(s) 170, 566, 767
TspDTI ATGAA 2 cut(s) 240, 449
TspGWI ACGGA 2 cut(s) 512, 683
TspRI CASTG 3 cut(s) 112, 135, 220
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 605
XmaJI CCTAGG 1 cut(s) 394
XspI CTAG 3 cut(s) 93, 395, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.