MD07G1274800.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000238
Physical Location & Seq
Forward (+)
34012657 .. 34013116
460 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1274800.v1.1.491

Sequence Viewer

Length: 318 bp
ATGTGGTTCTTCAGAAGAAAAGGGCCATCAGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTGAAGGGATTGATGCCACTGATGGAGCATCCAGTGGTATTGGCACCGAAACCGCACGCGTTCTTGCACTGCGTGGCGCCCATGTGGTTATGGCAGTGAGGAACATGGCTGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATCCCCAGTGCCAAAGTTGATGCCATGGAATTGGATCTCAGTTCGTTATCATCCGTTAGGAAATTCGCATCGGATTTCAATTCCTCTGGTCTTCCTCTAACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

106

Amino Acids

11.0

Weight (kDa)

6.57

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 30 - 94 2.9e-08 short chain dehydrogenase
adh_short_C2 PF13561 30 - 95 3.7e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 107, 140
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 1 cut(s) 289
AlwI GGATC 1 cut(s) 252
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 23
BanI GGYRCC 2 cut(s) 107, 140
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 34, 80
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 109, 142
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 5 cut(s) 67, 101, 175, 220, 287
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 96, 216
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 92, 260
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 96, 216
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 2 cut(s) 107, 140
BsiSI CCGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 109, 142
BspPI GGATC 1 cut(s) 252
BspT107I GGYRCC 2 cut(s) 107, 140
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 2 cut(s) 96, 216
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 92, 260
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 92, 260
BtsI GCAGTG 2 cut(s) 131, 165
BtsIMutI CAGTG 5 cut(s) 81, 103, 131, 165, 223
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 3 cut(s) 146, 169, 235
CviJI RGCY 2 cut(s) 25, 173
CviKI_1 RGCY 2 cut(s) 25, 173
DdeI CTNAG 1 cut(s) 248
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 3 cut(s) 149, 172, 238
FaiI YATR 4 cut(s) 147, 155, 170, 236
FatI CATG 3 cut(s) 145, 168, 234
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 2 cut(s) 79, 247
Fsp4HI GCNGC 1 cut(s) 174
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 177
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 3 cut(s) 149, 172, 238
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 14, 283
HpyAV CCTTC 2 cut(s) 62, 199
HpyCH4V TGCA 2 cut(s) 131, 188
HpyF3I CTNAG 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 3 cut(s) 149, 172, 238
HspAI GCGC 1 cut(s) 141
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 15, 109, 190, 229, 282
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 5 cut(s) 67, 101, 175, 220, 287
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 27, 36, 68, 293
MflI RGATCY 1 cut(s) 244
MluCI AATT 3 cut(s) 239, 272, 289
MluI ACGCGT 1 cut(s) 121
Mly113I GGCGCC 1 cut(s) 141
MnlI CCTC 3 cut(s) 156, 304, 315
MseI TTAA 1 cut(s) 316
MspI CCGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 123
NarI GGCGCC 1 cut(s) 141
NcoI CCATGG 1 cut(s) 234
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 149, 172, 238
NlaIV GGNNCC 2 cut(s) 109, 142
PkrI GCNGC 1 cut(s) 175
PluTI GGCGCC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 109, 142
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 244
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 23
SfaNI GCATC 5 cut(s) 67, 101, 175, 220, 287
SfoI GGCGCC 1 cut(s) 142
Sse9I AATT 3 cut(s) 239, 272, 289
SsiI CCGC 1 cut(s) 117
SspDI GGCGCC 1 cut(s) 140
StyI CCWWGG 1 cut(s) 234
TasI AATT 3 cut(s) 239, 272, 289
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 5 cut(s) 88, 103, 138, 165, 223
TseI GCWGC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 5 cut(s) 88, 103, 138, 165, 223
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.