RchiOBHm_Chr7g0197421

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000238
Physical Location & Seq
Reverse (-)
15345380 .. 15347488
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17661

Sequence Viewer

Length: 930 bp
ATGGGACTCTTTAGCAAGAAAGGGCCTTCTGGGTTTTCTTCAACTTCCACAGCAGAGGAAGTTACGCAAGGGATTGATGCAACTGGAGCCTCTAGTGGTATTGGCACTGAGACAACGCGTGTTCTTGTGTTGCGTGGTGCTTATGTGGTCATGGCAGTGAGGAACAAGGATGCTGGTATAAATGTCAAAGAAGCAATTCTCAAAGAAATTCCGGATGCTAAAATTGATGTCACGGGGTTAGATCTCAGCTCAATGGCATCTGTAAGAAAATTTGCAGAAGAGTATAATTCCAAAGGCCTTCCATTGAATATCCTTATTAACAATGCAGGGGTTATGGTAGATAAATTCAAGCTATCTCAAGACAACATAGAACTCGATTTTGCAACTAACCATTTAGGTCATTTTCTTCTCACAAATCTTCTGTTAGAGAACATGAAACACACATCGAGAAAAAGCAGCATAGAGGGGAGAATTGTTAATGTATCATCACTTGGCCATAGATATACATACCGTGAAGGAATTCGTTTTGAAATTATTAATGACAAATCAAGATACAAGTCATACAAAAACTATGTTGCTTATGCAGAATCCAAGCTCGCCAACATATTGCATGCTAATGAGCTTACAAGGCGCCTCAAGAAAGGGTTCAGTGCTAATTCTCTTCACCCTGGAACAATTCGCACCAATATTATGCGTAATGATATCAGCGTAAAGTGTCTTCTTAAGGTGCTCCGGCTAATATTTATTAGCAAAACTATTCAGCAGGGAGCAGCAACCACATGCTTTTTGGCACTGAATCCACAAGTTAAGGGAGTAAGCGGCGAATACTATGTGGACTGTAACATTGCCAAACCGAGCTCTCAGGCAAATGACGCAGATTTGGCCAAGAGACTCTGGGATTTTAGCTTCAGTTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

309

Amino Acids

34.09

Weight (kDa)

9.52

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 28 - 169 2e-22 short chain dehydrogenase
KR PF08659 28 - 154 9.6e-06 KR domain
adh_short_C2 PF13561 29 - 167 8.5e-12 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 630
AccII CGCG 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 1 cut(s) 819
AcoI YGGCCR 2 cut(s) 493, 882
AcsI RAATTY 4 cut(s) 207, 269, 344, 519
AcuI CTGAAG 1 cut(s) 892
AcyI GRCGYC 1 cut(s) 631
AflII CTTAAG 1 cut(s) 722
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 4 cut(s) 42, 307, 349, 530
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 6 cut(s) 249, 352, 595, 622, 858, 906
AluI AGCT 6 cut(s) 249, 352, 595, 622, 858, 906
Alw21I GWGCWC 2 cut(s) 732, 860
Alw26I GTCTC 2 cut(s) 104, 883
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 4 cut(s) 23, 295, 493, 882
ApeKI GCWGC 2 cut(s) 456, 770
ApoI RAATTY 4 cut(s) 207, 269, 344, 519
AseI ATTAAT 1 cut(s) 537
Asp700I GAANNNNTTC 3 cut(s) 195, 519, 644
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 656
BalI TGGCCA 2 cut(s) 495, 884
BanI GGYRCC 1 cut(s) 630
BanII GRGCYC 1 cut(s) 860
BarI GAAGNNNNNNTAC 2 cut(s) 702, 734
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 2 cut(s) 732, 860
BbvI GCAGC 2 cut(s) 468, 782
BciT130I CCWGG 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 104, 883
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 634
BfrI CTTAAG 1 cut(s) 722
BglII AGATCT 1 cut(s) 241
BisI GCNGC 3 cut(s) 457, 771, 820
BlsI GCNGC 3 cut(s) 458, 772, 821
Bme1390I CCNGG 1 cut(s) 669
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 88, 632
BmrFI CCNGG 1 cut(s) 669
BmsI GCATC 4 cut(s) 67, 160, 205, 266
BpiI GAAGAC 1 cut(s) 710
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 3 cut(s) 342, 620, 908
BsaHI GRCGYC 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 667
BsaWI WCCGGW 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 843
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 667
BseGI GGATG 2 cut(s) 175, 220
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 99, 259, 875
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 468, 782
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 4 cut(s) 25, 297, 495, 884
BshNI GGYRCC 1 cut(s) 630
BsiHKAI GWGCWC 2 cut(s) 732, 860
BsiSI CCGG 2 cut(s) 212, 733
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 104, 883
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 4 cut(s) 25, 297, 495, 884
Bsp1286I GDGCHC 2 cut(s) 732, 860
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 819
BspANI GGCC 4 cut(s) 25, 297, 495, 884
BspCNI CTCAG 3 cut(s) 100, 258, 874
BspEI TCCGGA 1 cut(s) 211
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 88, 632
BspT107I GGYRCC 1 cut(s) 630
BspTI CTTAAG 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 667
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 512, 839
Bst6I CTCTTC 2 cut(s) 273, 666
BstACI GRCGYC 1 cut(s) 631
BstAFI CTTAAG 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 597, 612
BstDEI CTNAG 3 cut(s) 108, 245, 861
BstF5I GGATG 2 cut(s) 175, 220
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 104, 883
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 4 cut(s) 86, 628, 872, 881
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 2 cut(s) 614, 783
BstSCI CCNGG 1 cut(s) 667
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 468, 782
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 4 cut(s) 25, 297, 495, 884
BtsCI GGATG 2 cut(s) 175, 220
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 4 cut(s) 105, 162, 655, 791
Cac8I GCNNGC 2 cut(s) 597, 612
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 881
CviAII CATG 4 cut(s) 151, 433, 611, 780
DdeI CTNAG 3 cut(s) 108, 245, 861
DinI GGCGCC 1 cut(s) 632
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 2 cut(s) 493, 882
Eam1104I CTCTTC 2 cut(s) 273, 666
EarI CTCTTC 2 cut(s) 273, 666
Ecl136II GAGCTC 1 cut(s) 858
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 860
Eco32I GATATC 1 cut(s) 703
Eco53kI GAGCTC 1 cut(s) 858
Eco57I CTGAAG 1 cut(s) 892
EcoICRI GAGCTC 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 667
EcoRV GATATC 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 860
EgeI GGCGCC 1 cut(s) 632
EheI GGCGCC 1 cut(s) 632
FaeI CATG 4 cut(s) 154, 436, 614, 783
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 150, 432, 610, 779
Fnu4HI GCNGC 3 cut(s) 457, 771, 820
FokI GGATG 2 cut(s) 182, 227
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 3 cut(s) 457, 771, 820
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 632
GluI GCNGC 3 cut(s) 457, 771, 820
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 4 cut(s) 25, 297, 495, 884
HapII CCGG 2 cut(s) 212, 733
HgaI GACGC 1 cut(s) 881
HhaI GCGC 1 cut(s) 633
Hin1I GRCGYC 1 cut(s) 631
Hin1II CATG 4 cut(s) 154, 436, 614, 783
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HinfI GANTC 4 cut(s) 6, 587, 796, 891
HpaII CCGG 2 cut(s) 212, 733
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 835
Hpy188III TCNNGA 5 cut(s) 212, 359, 447, 549, 637
Hpy8I GTNNAC 1 cut(s) 835
HpyAV CCTTC 3 cut(s) 36, 308, 509
HpyCH4III ACNGT 2 cut(s) 512, 839
HpyCH4V TGCA 6 cut(s) 80, 275, 326, 383, 584, 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 628, 872, 881
HpyF3I CTNAG 3 cut(s) 108, 245, 861
Hsp92I GRCGYC 1 cut(s) 631
Hsp92II CATG 4 cut(s) 154, 436, 614, 783
HspAI GCGC 1 cut(s) 631
KasI GGCGCC 1 cut(s) 630
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 3 cut(s) 86, 735, 767
Lsp1109I GCAGC 2 cut(s) 468, 782
LweI GCATC 4 cut(s) 67, 160, 205, 266
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 61, 229, 839
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 6 cut(s) 30, 290, 398, 410, 653, 710
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 732, 860
MlsI TGGCCA 2 cut(s) 495, 884
MluI ACGCGT 1 cut(s) 116
MluNI TGGCCA 2 cut(s) 495, 884
Mly113I GGCGCC 1 cut(s) 631
MlyI GAGTC 1 cut(s) 885
MnlI CCTC 5 cut(s) 49, 100, 153, 457, 644
Mox20I TGGCCA 2 cut(s) 495, 884
MroI TCCGGA 1 cut(s) 211
MroXI GAANNNNTTC 3 cut(s) 195, 519, 644
MscI TGGCCA 2 cut(s) 495, 884
MseI TTAA 5 cut(s) 318, 477, 537, 723, 807
MslI CAYNNNNRTG 2 cut(s) 155, 615
Msp20I TGGCCA 2 cut(s) 495, 884
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 2 cut(s) 212, 733
MspR9I CCNGG 1 cut(s) 669
MvaI CCWGG 1 cut(s) 669
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 86, 628, 872, 881
NarI GGCGCC 1 cut(s) 631
NdeII GATC 1 cut(s) 241
NlaIII CATG 4 cut(s) 154, 436, 614, 783
NlaIV GGNNCC 2 cut(s) 88, 632
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 2 cut(s) 614, 783
PaeI GCATGC 1 cut(s) 614
PceI AGGCCT 1 cut(s) 297
PdmI GAANNNNTTC 3 cut(s) 195, 519, 644
PfeI GAWTC 2 cut(s) 587, 796
PkrI GCNGC 3 cut(s) 458, 772, 821
PleI GAGTC 1 cut(s) 885
PluTI GGCGCC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 885
PshBI ATTAAT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 88, 632
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 155, 615
SacI GAGCTC 1 cut(s) 860
SaqAI TTAA 5 cut(s) 318, 477, 537, 723, 807
SatI GCNGC 3 cut(s) 457, 771, 820
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 885
ScrFI CCNGG 1 cut(s) 669
SduI GDGCHC 2 cut(s) 732, 860
SetI ASST 8 cut(s) 251, 354, 400, 597, 624, 729, 860, 908
SfaNI GCATC 4 cut(s) 67, 160, 205, 266
SfoI GGCGCC 1 cut(s) 632
SmiMI CAYNNNNRTG 2 cut(s) 155, 615
SmlI CTYRAG 4 cut(s) 357, 635, 722, 923
SmoI CTYRAG 4 cut(s) 357, 635, 722, 923
SphI GCATGC 1 cut(s) 614
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 1 cut(s) 819
SspDI GGCGCC 1 cut(s) 630
SspI AATATT 2 cut(s) 688, 741
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 860
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 512, 839
TaqI TCGA 2 cut(s) 375, 446
TauI GCSGC 1 cut(s) 822
TfiI GAWTC 2 cut(s) 587, 796
Tru1I TTAA 5 cut(s) 318, 477, 537, 723, 807
Tru9I TTAA 5 cut(s) 318, 477, 537, 723, 807
TscAI CASTG 4 cut(s) 112, 162, 655, 798
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 456, 770
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 4 cut(s) 112, 162, 655, 798
Vha464I CTTAAG 1 cut(s) 722
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 4 cut(s) 207, 269, 344, 519
XceI RCATGY 2 cut(s) 614, 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XmnI GAANNNNTTC 3 cut(s) 195, 519, 644
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.