FvH4_5g02644

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000238
Physical Location & Seq
Forward (+)
1589037 .. 1589719
683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02644.t1

Sequence Viewer

Length: 342 bp
ATGGGGTTAATTAGCAGGAAAGGGCCATCTGGGTTCTCAGCCTCTTCCACAGCAGAGGAAGTTACTCAAGGGATTGATGGAACTGGTCTGACTGCCATTGTTACAGGAGCCACAAGTGGTCTTGGTTTAGAGACATCACGTGTTCTTGCCTTGCGTGGTGTGCATGTAGTTATGGCAATAAGGAACACGAGTGCAGGGAAAAATGTCAAAGAAGCAATTCTTAAAGAAATCCCCAGTGCTAGAGTTGATGTTATGGAGTTAGATCTGAGCTCATTGGCATCTGTAAGAAAGTTTGGAGAAGATTATAATTCCTTGGGGCTTCCACTGAACATCCTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

114

Amino Acids

11.72

Weight (kDa)

6.57

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 104 7.6e-10 short chain dehydrogenase
KR PF08659 31 - 104 8.7e-06 KR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AcvI CACGTG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 139
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 272
BauI CACGAG 1 cut(s) 187
BbrPI CACGTG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 272
BccI CCATC 2 cut(s) 34, 71
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 88, 234
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 51, 257
BseNI ACTGG 2 cut(s) 88, 234
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 50, 258
BspLI GGNNCC 1 cut(s) 109
BsrI ACTGG 2 cut(s) 88, 234
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 262
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 37, 266
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 241, 323
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 1 cut(s) 164
CviJI RGCY 5 cut(s) 25, 41, 110, 270, 319
CviKI_1 RGCY 5 cut(s) 25, 41, 110, 270, 319
DdeI CTNAG 2 cut(s) 37, 266
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 270
Eco72I CACGTG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 165, 173, 254, 306, 338
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 163
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 272
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 90, 267
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 163, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 37, 266
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 15, 69, 90, 180, 247
LweI GCATC 1 cut(s) 287
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 36, 311
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 3 cut(s) 9, 216, 307
MnlI CCTC 2 cut(s) 49, 52
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 2 cut(s) 8, 222
MslI CAYNNNNRTG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 216
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
PsiI TTATAA 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 272
PspCI CACGTG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 8, 222
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 272
SetI ASST 2 cut(s) 142, 272
SfaNI GCATC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 3 cut(s) 9, 216, 307
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 1 cut(s) 272
StyI CCWWGG 1 cut(s) 312
TaiI ACGT 1 cut(s) 142
TasI AATT 3 cut(s) 9, 216, 307
Tru1I TTAA 2 cut(s) 8, 222
Tru9I TTAA 2 cut(s) 8, 222
TscAI CASTG 2 cut(s) 241, 330
TspRI CASTG 2 cut(s) 241, 330
XceI RCATGY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.