Rorug07G0041500

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000238
Physical Location & Seq
Reverse (-)
2922190 .. 2923600
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0041500.1

Sequence Viewer

Length: 756 bp
ATGACAACCGTCACGACTCAGGCGTCCGCCGTCTACCGGCCACAAATCACCTCGAAATCGAGGTTCCTTACCGGCTCTTCTGGCAAGTTAACTAGGGAAGTGGCTTTTAGGCCTGTGACATCTTCTGCTAGTTCTTTTAAAGTTGAGGCCAAGAAGGGTGAGTGGTTACCTGGCTTGCCATCACCAGGTTACCTAACTGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTTTGGCACTTGCTGAGGACCCAGAGAACCTGAAGTGGTTTGTACAAGCTGAGCTTGTGAACGGTCGTTGGGCTATGTTGGGTGTAGTTGGGATGCTATTGCCTGAAGTCTTGACAAGCACTGGGATCATTAACGTTCCGAAATGGTATGATGCTGGGAAAGCCGAGTACTTTGCATCTTCCTCCACCCTCTTTGTGATCGAGTTCATCTTGTTCCACTATGTCGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCACCAAATGAGGTAGGTTACCCTGGTGGCATCTTCAACCCTCTCAACTTTGCACCAACTGAGGAGGCCAAGGAGAAGGAAATCGCCAACGGGAGACTGGCAATGTTGGCATTCCTGGGATTTGTGGTTCAACACAATGTGACTGGCAAAGGACCCTTTGACAACCTAGTGCAGCATCTTTCTGACCCATGGCACAACACCATTGTCCAAACACTAAGGGGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

251

Amino Acids

27.72

Weight (kDa)

6.44

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 62 - 221 1.2e-47 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 27
AclI AACGTT 1 cut(s) 363
AclWI GGATC 2 cut(s) 221, 362
AcoI YGGCCR 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 281, 354
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 2 cut(s) 273, 398
AfiI CCNNNNNNNGG 2 cut(s) 36, 185
AgsI TTSAA 3 cut(s) 514, 565, 659
AjnI CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
AluBI AGCT 3 cut(s) 278, 283, 525
AluI AGCT 3 cut(s) 278, 283, 525
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 2 cut(s) 221, 362
AoxI GGCC 4 cut(s) 38, 110, 147, 594
ApeKI GCWGC 1 cut(s) 700
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspS9I GGNCC 2 cut(s) 247, 680
AsuHPI GGTGA 4 cut(s) 40, 170, 174, 224
AvaII GGWCC 2 cut(s) 247, 680
BbsI GAAGAC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 712
BccI CCATC 2 cut(s) 187, 515
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 4 cut(s) 93, 129, 695, 754
BisI GCNGC 1 cut(s) 701
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 702
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
Bme18I GGWCC 2 cut(s) 247, 680
BmgT120I GGNCC 2 cut(s) 247, 680
BmiI GGNNCC 3 cut(s) 65, 249, 682
BmrFI CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 5 cut(s) 312, 370, 413, 567, 712
BmuI ACTGGG 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 5 cut(s) 484, 550, 597, 643, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 185
Bse118I RCCGGY 2 cut(s) 36, 71
Bse1I ACTGG 4 cut(s) 202, 355, 630, 676
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
BseDI CCNNGG 5 cut(s) 484, 550, 597, 643, 716
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 36, 185
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 4 cut(s) 32, 234, 270, 579
BseNI ACTGG 4 cut(s) 202, 355, 630, 676
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 40, 112, 149, 596
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 37, 72
BslI CCNNNNNNNGG 2 cut(s) 36, 185
BsmAI GTCTC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 4 cut(s) 40, 112, 149, 596
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 4 cut(s) 226, 354, 426, 456
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 1 cut(s) 27
BspANI GGCC 4 cut(s) 40, 112, 149, 596
BspCNI CTCAG 4 cut(s) 31, 235, 271, 580
BspLI GGNNCC 3 cut(s) 65, 249, 682
BspPI GGATC 2 cut(s) 221, 362
BspQI GCTCTTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 2 cut(s) 36, 71
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 4 cut(s) 202, 355, 630, 676
BssAI RCCGGY 2 cut(s) 36, 71
BssECI CCNNGG 5 cut(s) 484, 550, 597, 643, 716
BssMI GATC 4 cut(s) 226, 354, 426, 456
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 597, 716
Bst2UI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
Bst4CI ACNGT 3 cut(s) 10, 293, 465
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 176, 527
BstDEI CTNAG 5 cut(s) 18, 243, 279, 588, 743
BstDSI CCRYGG 1 cut(s) 716
BstEII GGTNACC 3 cut(s) 165, 188, 545
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 4 cut(s) 229, 357, 429, 459
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 226, 354, 426, 456
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 81, 389, 635
BstNI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
BstPAI GACNNNNGTC 1 cut(s) 8
BstPI GGTNACC 3 cut(s) 165, 188, 545
BstSCI CCNGG 6 cut(s) 169, 184, 208, 484, 550, 642
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 4 cut(s) 40, 112, 149, 596
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 176, 527
Cfr10I RCCGGY 2 cut(s) 36, 71
Cfr13I GGNCC 2 cut(s) 247, 680
CseI GACGC 1 cut(s) 12
CsiI ACCWGGT 1 cut(s) 184
Csp6I GTAC 2 cut(s) 272, 397
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 1 cut(s) 717
CviQI GTAC 2 cut(s) 272, 397
DdeI CTNAG 5 cut(s) 18, 243, 279, 588, 743
DpnI GATC 4 cut(s) 228, 356, 428, 458
DpnII GATC 4 cut(s) 226, 354, 426, 456
DraI TTTAAA 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 667
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 597, 716
Eco147I AGGCCT 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 247, 680
Eco57I CTGAAG 2 cut(s) 281, 354
Eco91I GGTNACC 3 cut(s) 165, 188, 545
EcoO109I RGGNCCY 2 cut(s) 247, 680
EcoO65I GGTNACC 3 cut(s) 165, 188, 545
EcoRII CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
EcoT14I CCWWGG 2 cut(s) 597, 716
ErhI CCWWGG 2 cut(s) 597, 716
FaeI CATG 1 cut(s) 720
FaiI YATR 4 cut(s) 305, 378, 450, 718
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 1 cut(s) 716
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 701
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 701
FspBI CTAG 4 cut(s) 93, 129, 695, 754
GluI GCNGC 1 cut(s) 701
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 4 cut(s) 40, 112, 149, 596
HapII CCGG 2 cut(s) 37, 72
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 720
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 16
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 2 cut(s) 37, 72
HphI GGTGA 4 cut(s) 40, 170, 174, 224
Hpy166II GTNNAC 4 cut(s) 34, 90, 289, 496
Hpy188I TCNGA 3 cut(s) 369, 461, 712
Hpy188III TCNNGA 4 cut(s) 13, 340, 454, 478
Hpy8I GTNNAC 4 cut(s) 34, 90, 289, 496
HpyAV CCTTC 2 cut(s) 148, 598
HpyCH4III ACNGT 3 cut(s) 10, 293, 465
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 404, 581, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 389, 635
HpyF3I CTNAG 5 cut(s) 18, 243, 279, 588, 743
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 720
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 226, 354, 426, 456
LguI GCTCTTC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 5 cut(s) 312, 370, 413, 567, 712
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 4 cut(s) 93, 129, 695, 754
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 7 cut(s) 10, 115, 165, 188, 212, 545, 667
MalI GATC 4 cut(s) 228, 356, 428, 458
MboI GATC 4 cut(s) 226, 354, 426, 456
MboII GAAGA 6 cut(s) 69, 114, 197, 399, 502, 553
MlyI GAGTC 1 cut(s) 10
MseI TTAA 3 cut(s) 89, 138, 360
MspI CCGG 2 cut(s) 37, 72
MspR9I CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
MwoI GCNNNNNNNGC 3 cut(s) 81, 389, 635
NcoI CCATGG 1 cut(s) 716
NdeII GATC 4 cut(s) 226, 354, 426, 456
NlaIII CATG 1 cut(s) 720
NlaIV GGNNCC 3 cut(s) 65, 249, 682
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 4 cut(s) 10, 115, 212, 667
PceI AGGCCT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 638
PkrI GCNGC 1 cut(s) 702
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 2 cut(s) 247, 680
PshAI GACNNNNGTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 363
Psp5II RGGWCCY 2 cut(s) 247, 680
Psp6I CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
PspEI GGTNACC 3 cut(s) 165, 188, 545
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
PspN4I GGNNCC 3 cut(s) 65, 249, 682
PspPI GGNCC 2 cut(s) 247, 680
PspPPI RGGWCCY 2 cut(s) 247, 680
RsaI GTAC 2 cut(s) 273, 398
RsaNI GTAC 2 cut(s) 272, 397
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 89, 138, 360
SatI GCNGC 1 cut(s) 701
Sau3AI GATC 4 cut(s) 226, 354, 426, 456
Sau96I GGNCC 2 cut(s) 247, 680
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 5 cut(s) 312, 370, 413, 567, 712
SinI GGWCC 2 cut(s) 247, 680
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 1 cut(s) 27
SspMI CTAG 4 cut(s) 93, 129, 695, 754
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 6 cut(s) 169, 184, 208, 484, 550, 642
StyI CCWWGG 2 cut(s) 597, 716
TaaI ACNGT 3 cut(s) 10, 293, 465
TaiI ACGT 1 cut(s) 366
TaqI TCGA 4 cut(s) 53, 59, 429, 453
TatI WGTACW 2 cut(s) 271, 396
Tru1I TTAA 3 cut(s) 89, 138, 360
Tru9I TTAA 3 cut(s) 89, 138, 360
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 4 cut(s) 10, 115, 212, 667
TseI GCWGC 1 cut(s) 700
Tsp45I GTSAC 4 cut(s) 10, 115, 212, 667
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 247, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 4 cut(s) 93, 129, 695, 754
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.