MD07G1274500.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000238
Physical Location & Seq
Forward (+)
33999934 .. 34002222
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1274500.v1.1.491

Sequence Viewer

Length: 942 bp
ATGTGGTGCTTCAGAAGAAGGGGGCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTCAAGGGATTGATGCCACTGGTCTCACCGCCATTGTTACAGATGGAGCATCTAGTGGTATTGGCACCGAAACTGCACGCGTTCTTGCACTGCGTGGCGCCCATGTGGTTATGGCAGTGAGGAACATGGCTGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATTCCCAGTGCCAAAGTTGATGCCATGGAATTGGATCTCAGTTCGTTATCATCCGTTAGGAAATTCGCCTCGGATTTCAATTCCTCTGGTCTTCCTCTTAACATCCTAATTAACAATGCAGGAGTGGCAACCCCTTTCACGCTTTCTAAAGACAAGATCGAACTTCAGTTCGCGACAAACCACGTAGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAGCACGCAAAAGCGGCAAAGAAGGGAGAATCGTAAATGTGTCCTCAGAAGGTCACCGCTACCCGTATCCTGAAGGAATTCGTTTTGATAAAATTAACGACCAACAAGGGTACAGCAACTTTCGTGCATATTGCCAATCGAAGCTTGCTAACATTTTGCACGCTAATGAGCTTGCAAGACGCTTAAAGGAAGAAGGAGCTGATATAACTGCAAACTCGCTTCACCCTGGTGCAATTGTTACCAATCTGTTTCGTTATAACAGTGCTATTAACGGGCTTGTTAAGGTGCTTGGTAGAGCTGTGCTTAAAAATGTTAAGCAGGGAGCGGCAACGACGTGCTATGTGGCACTGCATCCACAAGTCAAGGGGGTGACGGGCGAATATTTTCGGGACAGTAACCTATCCAAGCCAAGTCGACAAGGTCAAGATGCGGAGATGGCAAAGAAACTATGGGATTACAGCATGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

314

Amino Acids

34.01

Weight (kDa)

9.55

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 180 6.2e-25 short chain dehydrogenase
adh_short_C2 PF13561 37 - 281 3.9e-19 Enoyl-(Acyl carrier protein) reductase
KR PF08659 37 - 126 5.7e-06 KR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AccB1I GGYRCC 2 cut(s) 128, 161
AccBSI CCGCTC 1 cut(s) 788
AccI GTMKAC 1 cut(s) 877
AccII CGCG 2 cut(s) 144, 404
AciI CCGC 5 cut(s) 93, 477, 520, 788, 893
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 2 cut(s) 293, 540
AcuI CTGAAG 2 cut(s) 380, 555
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 1 cut(s) 310
AjiI CACGTC 1 cut(s) 798
AjnI CCWGG 1 cut(s) 688
AleI CACNNNNGTG 1 cut(s) 690
AluBI AGCT 4 cut(s) 607, 634, 662, 761
AluI AGCT 4 cut(s) 607, 634, 662, 761
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 273
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 293, 540
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
Asp700I GAANNNNTTC 2 cut(s) 540, 846
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 82, 509, 677, 844
BanI GGYRCC 2 cut(s) 128, 161
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 181
BccI CCATC 3 cut(s) 34, 101, 892
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 2 cut(s) 442, 540
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 165
BfuI GTATCC 2 cut(s) 442, 540
BisI GCNGC 3 cut(s) 195, 478, 789
BlsI GCNGC 3 cut(s) 196, 479, 790
Bme1390I CCNGG 1 cut(s) 690
BmgBI CACGTC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 24, 130, 163
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 6 cut(s) 67, 122, 196, 241, 823, 880
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 255, 300, 688
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 88, 237
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 3 cut(s) 255, 300, 688
BseGI GGATG 3 cut(s) 281, 333, 814
BseMII CTCAG 2 cut(s) 283, 522
BseNI ACTGG 2 cut(s) 88, 237
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 2 cut(s) 144, 404
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 2 cut(s) 128, 161
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 866
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 265, 387
Bsp19I CCATGG 1 cut(s) 255
Bsp68I TCGCGA 1 cut(s) 404
BspACI CCGC 5 cut(s) 93, 477, 520, 788, 893
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 282, 521
BspFNI CGCG 2 cut(s) 144, 404
BspLI GGNNCC 3 cut(s) 24, 130, 163
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 2 cut(s) 128, 161
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 788
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 88, 237
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 255, 300, 688
BssMI GATC 2 cut(s) 265, 387
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 725, 857
BstACI GRCGYC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 5 cut(s) 142, 469, 609, 624, 636
BstDEI CTNAG 2 cut(s) 269, 508
BstDSI CCRYGG 1 cut(s) 255
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 3 cut(s) 281, 333, 814
BstFNI CGCG 2 cut(s) 144, 404
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 268, 390
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 265, 387
BstMWI GCNNNNNNNGC 3 cut(s) 356, 477, 899
BstNI CCWGG 1 cut(s) 690
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 688
BstUI CGCG 2 cut(s) 144, 404
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 2 cut(s) 442, 540
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 798
BtsCI GGATG 3 cut(s) 281, 333, 814
BtsI GCAGTG 3 cut(s) 152, 186, 809
BtsIMutI CAGTG 6 cut(s) 81, 152, 186, 244, 730, 809
BtuMI TCGCGA 1 cut(s) 404
Cac8I GCNNGC 5 cut(s) 142, 469, 609, 624, 636
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 651
Csp6I GTAC 1 cut(s) 574
CviAII CATG 4 cut(s) 167, 190, 256, 925
CviJI RGCY 8 cut(s) 25, 194, 607, 634, 662, 739, 761, 871
CviKI_1 RGCY 8 cut(s) 25, 194, 607, 634, 662, 739, 761, 871
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 269, 508
DinI GGCGCC 1 cut(s) 163
DpnI GATC 2 cut(s) 267, 389
DpnII GATC 2 cut(s) 265, 387
DraIII CACNNNGTG 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 380, 555
Eco91I GGTNACC 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 170, 193, 259, 928
FaqI GGGAC 1 cut(s) 866
FatI CATG 4 cut(s) 166, 189, 255, 924
FblI GTMKAC 1 cut(s) 877
Fnu4HI GCNGC 3 cut(s) 195, 478, 789
FokI GGATG 3 cut(s) 268, 320, 801
Fsp4HI GCNGC 3 cut(s) 195, 478, 789
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 163
GluI GCNGC 3 cut(s) 195, 478, 789
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 651
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 170, 193, 259, 928
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 878
HindII GTYRAC 1 cut(s) 878
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 1 cut(s) 492
HpaII CCGG 1 cut(s) 198
HphI GGTGA 4 cut(s) 82, 509, 677, 844
Hpy166II GTNNAC 1 cut(s) 878
Hpy188I TCNGA 3 cut(s) 14, 304, 511
Hpy188III TCNNGA 4 cut(s) 403, 533, 851, 887
Hpy8I GTNNAC 1 cut(s) 878
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 6 cut(s) 12, 220, 479, 506, 530, 650
HpyCH4III ACNGT 2 cut(s) 725, 857
HpyCH4IV ACGT 2 cut(s) 414, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 477, 899
HpyF3I CTNAG 2 cut(s) 269, 508
HpySE526I ACGT 2 cut(s) 414, 797
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 170, 193, 259, 928
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 265, 387
LmnI GCTCC 3 cut(s) 110, 659, 785
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 6 cut(s) 67, 122, 196, 241, 823, 880
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 414, 797
MaeIII GTNAC 6 cut(s) 61, 100, 515, 700, 832, 857
MalI GATC 2 cut(s) 267, 389
MbiI CCGCTC 1 cut(s) 788
MboI GATC 2 cut(s) 265, 387
MboII GAAGA 6 cut(s) 27, 36, 68, 314, 469, 665
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 265
MluCI AATT 8 cut(s) 231, 260, 293, 310, 339, 540, 555, 696
MluI ACGCGT 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 5 cut(s) 177, 310, 325, 336, 517
MroXI GAANNNNTTC 2 cut(s) 540, 846
MseI TTAA 8 cut(s) 330, 342, 558, 647, 732, 744, 768, 777
MslI CAYNNNNRTG 2 cut(s) 627, 690
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 2 cut(s) 144, 404
MwoI GCNNNNNNNGC 3 cut(s) 356, 477, 899
NarI GGCGCC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 265, 387
NlaIII CATG 4 cut(s) 170, 193, 259, 928
NlaIV GGNNCC 3 cut(s) 24, 130, 163
NmuCI GTSAC 2 cut(s) 515, 832
NruI TCGCGA 1 cut(s) 404
OliI CACNNNNGTG 1 cut(s) 690
PdmI GAANNNNTTC 2 cut(s) 540, 846
PfeI GAWTC 1 cut(s) 492
PflFI GACNNNGTC 1 cut(s) 882
PkrI GCNGC 3 cut(s) 196, 479, 790
PluTI GGCGCC 1 cut(s) 165
Ppu21I YACGTR 1 cut(s) 415
PsiI TTATAA 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 688
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 3 cut(s) 24, 130, 163
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 882
RruI TCGCGA 1 cut(s) 404
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 627, 690
SalI GTCGAC 1 cut(s) 876
SaqAI TTAA 8 cut(s) 330, 342, 558, 647, 732, 744, 768, 777
SatI GCNGC 3 cut(s) 195, 478, 789
Sau3AI GATC 2 cut(s) 265, 387
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 690
SfaNI GCATC 6 cut(s) 67, 122, 196, 241, 823, 880
SfoI GGCGCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 627, 690
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 8 cut(s) 231, 260, 293, 310, 339, 540, 555, 696
SsiI CCGC 5 cut(s) 93, 477, 520, 788, 893
SspDI GGCGCC 1 cut(s) 161
SspI AATATT 1 cut(s) 845
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 725, 857
TaiI ACGT 2 cut(s) 417, 800
TaqI TCGA 3 cut(s) 390, 602, 877
TasI AATT 8 cut(s) 231, 260, 293, 310, 339, 540, 555, 696
TauI GCSGC 2 cut(s) 480, 791
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 8 cut(s) 330, 342, 558, 647, 732, 744, 768, 777
Tru9I TTAA 8 cut(s) 330, 342, 558, 647, 732, 744, 768, 777
TscAI CASTG 6 cut(s) 88, 159, 186, 244, 730, 816
TseFI GTSAC 2 cut(s) 515, 832
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 2 cut(s) 515, 832
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 6 cut(s) 88, 159, 186, 244, 730, 816
Tth111I GACNNNGTC 1 cut(s) 882
XapI RAATTY 2 cut(s) 293, 540
XmiI GTMKAC 1 cut(s) 877
XmnI GAANNNNTTC 2 cut(s) 540, 846
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.