Rw7G014330

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000238
Physical Location & Seq
Reverse (-)
13922409 .. 13924666
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014330.1

Sequence Viewer

Length: 936 bp
ATGGGGATATTATTTAGCAAGAAAGGACCATCTGGATTTTCTGCTTTTTCGACAGCAGAGGAGGTTACTCATGGGATTGATGGAACTGGTCTTACTGCCGTAGTCACAGGAGCTTCAAGTGGTATTGGCGTAGAGACATCACATGTCCTTGCTTTGCGGGGTGTCCATGTAGTAATGGCAGTCAGGAACATTGATGCTGGGAATAATGTTAAAGAAGCAATACTTAAGGACATTCCCACTGCTAAAATTGATATCATGGAATTAGACCTCAGCTCTTTAGCATCTGTAAGAAAATTTGCAGCGGACTATAATTCTAAAGGCCTTCCACTGAACATCCTTATTAACAATGCAGGGGTTATGGCAACTCCATTCAAGCTTTCTCAAGATAACATAGAACTTCAGTTTGCTACGAACCATTTAGGTCATTTTCTCCTCACAAATCTTCTCTTGGAGACAATGAAACACACATCGCGAGAGAGCAGAATAGAAGGAAGAGTTGTTAATGTAGCATCTTTAGGCCATAAATTTGGGTATCCGGAAGGAATTGTTTTCGATGAAATCAATGATGAATCAAGGTACAACAAATATCGTGCATATAACCAATCCAAGCTTGCTAACATATTACATGCTAATGAGCTTGCAAGGCGTTTAAAGGAAGAAGGTGTGGAGATAACTGCTAATTCTCTTCATCCCGGAGATATTTACACAAATCTTTTACGCAATACGCTGTCCCTGCTGGGTATATTTATGTCAAAAACCGTTGAGCAGGGAGCGGCGACAACATGCTTTGTGTCACTTCATCCACAAGTAAAGGGAGTAAGCGGTGAATACTTTTCAGGGTGCAACATCACCAAACCGAGCTCTCAGGCAAAAGATGGAGATGTGGCCAAGAAACTCTGGGAATTTAGCTTGAGTTTGACCGATCGAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

311

Amino Acids

33.81

Weight (kDa)

7.16

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 183 8.8e-25 short chain dehydrogenase
adh_short_C2 PF13561 37 - 241 1.2e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 773
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 4 cut(s) 157, 302, 773, 822
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 3 cut(s) 293, 524, 902
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 2 cut(s) 578, 932
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 2 cut(s) 117, 373
AluBI AGCT 7 cut(s) 113, 273, 376, 610, 637, 861, 909
AluI AGCT 7 cut(s) 113, 273, 376, 610, 637, 861, 909
Alw21I GWGCWC 1 cut(s) 863
Alw26I GTCTC 2 cut(s) 128, 446
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 3 cut(s) 319, 517, 885
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 3 cut(s) 293, 524, 902
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 836, 841
AvaII GGWCC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 887
BanII GRGCYC 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 863
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 311
BccI CCATC 3 cut(s) 37, 74, 869
BceAI ACGGC 1 cut(s) 83
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 128, 446
BfrI CTTAAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 2 cut(s) 300, 774
BlsI GCNGC 2 cut(s) 301, 775
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 184, 290, 518
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 366, 931
BpuMI CCSGG 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 91
BseAI TCCGGA 1 cut(s) 535
BseGI GGATG 3 cut(s) 333, 688, 799
BseMII CTCAG 2 cut(s) 283, 878
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 74, 422
BseXI GCAGC 1 cut(s) 311
BseYI CCCAGC 2 cut(s) 197, 736
Bsh1236I CGCG 1 cut(s) 472
Bsh1285I CGRYCG 1 cut(s) 925
BshFI GGCC 3 cut(s) 321, 519, 887
BsiEI CGRYCG 1 cut(s) 925
BsiHKAI GWGCWC 1 cut(s) 863
BsiSI CCGG 2 cut(s) 536, 693
BslFI GGGAC 1 cut(s) 715
BsmAI GTCTC 2 cut(s) 128, 446
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 3 cut(s) 321, 519, 887
Bsp1286I GDGCHC 1 cut(s) 863
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 1 cut(s) 922
Bsp68I TCGCGA 1 cut(s) 472
BspACI CCGC 4 cut(s) 157, 302, 773, 822
BspANI GGCC 3 cut(s) 321, 519, 887
BspCNI CTCAG 2 cut(s) 282, 877
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 472
BspTI CTTAAG 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 773
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 922
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 2 cut(s) 487, 690
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 612, 639
BstDEI CTNAG 2 cut(s) 269, 864
BstF5I GGATG 3 cut(s) 333, 688, 799
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 1 cut(s) 925
BstMAI GTCTC 2 cut(s) 128, 446
BstMBI GATC 1 cut(s) 922
BstMCI CGRYCG 1 cut(s) 925
BstMWI GCNNNNNNNGC 2 cut(s) 643, 733
BstNSI RCATGY 3 cut(s) 146, 629, 786
BstSCI CCNGG 1 cut(s) 691
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 3 cut(s) 321, 519, 887
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 333, 688, 799
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 326
BtuMI TCGCGA 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 612, 639
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 577, 931
CviAII CATG 6 cut(s) 71, 143, 167, 256, 626, 783
CviQI GTAC 2 cut(s) 577, 931
DdeI CTNAG 2 cut(s) 269, 864
DpnI GATC 1 cut(s) 924
DpnII GATC 1 cut(s) 922
DraI TTTAAA 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 2 cut(s) 487, 690
EarI CTCTTC 2 cut(s) 487, 690
Ecl136II GAGCTC 1 cut(s) 861
Eco147I AGGCCT 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 861
EcoRV GATATC 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 863
FaeI CATG 6 cut(s) 74, 146, 170, 259, 629, 786
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 715
FatI CATG 6 cut(s) 70, 142, 166, 255, 625, 782
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 300, 774
FokI GGATG 3 cut(s) 320, 675, 786
FriOI GRGCYC 1 cut(s) 863
Fsp4HI GCNGC 2 cut(s) 300, 774
GluI GCNGC 2 cut(s) 300, 774
GsaI CCCAGC 2 cut(s) 201, 740
HaeIII GGCC 3 cut(s) 321, 519, 887
HapII CCGG 2 cut(s) 536, 693
Hin1II CATG 6 cut(s) 74, 146, 170, 259, 629, 786
HindIII AAGCTT 2 cut(s) 374, 608
HinfI GANTC 1 cut(s) 569
HpaII CCGG 2 cut(s) 536, 693
HphI GGTGA 2 cut(s) 836, 841
Hpy188III TCNNGA 5 cut(s) 33, 184, 383, 471, 536
HpyAV CCTTC 4 cut(s) 332, 482, 533, 653
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4V TGCA 5 cut(s) 299, 350, 593, 641, 843
HpyF10VI GCNNNNNNNGC 2 cut(s) 643, 733
HpyF3I CTNAG 2 cut(s) 269, 864
Hsp92II CATG 6 cut(s) 74, 146, 170, 259, 629, 786
Kpn2I TCCGGA 1 cut(s) 535
Kzo9I GATC 1 cut(s) 922
LmnI GCTCC 2 cut(s) 110, 770
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 3 cut(s) 184, 290, 518
MaeIII GTNAC 3 cut(s) 64, 103, 792
MalI GATC 1 cut(s) 924
MbiI CCGCTC 1 cut(s) 773
MboI GATC 1 cut(s) 922
MboII GAAGA 4 cut(s) 434, 504, 668, 677
MhlI GDGCHC 1 cut(s) 863
MlsI TGGCCA 1 cut(s) 887
MluCI AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 902
MluNI TGGCCA 1 cut(s) 887
MnlI CCTC 4 cut(s) 52, 55, 278, 443
Mox20I TGGCCA 1 cut(s) 887
MroI TCCGGA 1 cut(s) 535
MscI TGGCCA 1 cut(s) 887
MseI TTAA 5 cut(s) 210, 225, 342, 501, 650
MslI CAYNNNNRTG 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 887
MspA1I CMGCKG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 2 cut(s) 536, 693
MspR9I CCNGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 2 cut(s) 643, 733
NciI CCSGG 1 cut(s) 693
NdeII GATC 1 cut(s) 922
NlaIII CATG 6 cut(s) 74, 146, 170, 259, 629, 786
NmuCI GTSAC 2 cut(s) 103, 792
NruI TCGCGA 1 cut(s) 472
NspI RCATGY 3 cut(s) 146, 629, 786
PceI AGGCCT 1 cut(s) 321
PciI ACATGT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 2 cut(s) 301, 775
Ple19I CGATCG 1 cut(s) 925
PscI ACATGT 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 863
PspFI CCCAGC 2 cut(s) 197, 736
PspPI GGNCC 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PvuI CGATCG 1 cut(s) 925
RruI TCGCGA 1 cut(s) 472
RsaI GTAC 2 cut(s) 578, 932
RsaNI GTAC 2 cut(s) 577, 931
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 863
SaqAI TTAA 5 cut(s) 210, 225, 342, 501, 650
SatI GCNGC 2 cut(s) 300, 774
Sau3AI GATC 1 cut(s) 922
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 932
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 1 cut(s) 863
SfaNI GCATC 3 cut(s) 184, 290, 518
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 3 cut(s) 224, 381, 910
SmoI CTYRAG 3 cut(s) 224, 381, 910
Sse9I AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 902
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 4 cut(s) 157, 302, 773, 822
SstI GAGCTC 1 cut(s) 863
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 1 cut(s) 760
TaqI TCGA 3 cut(s) 50, 552, 925
TaqII GACCGA 1 cut(s) 935
TasI AATT 8 cut(s) 246, 260, 293, 310, 524, 543, 679, 902
TatI WGTACW 1 cut(s) 930
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 5 cut(s) 210, 225, 342, 501, 650
Tru9I TTAA 5 cut(s) 210, 225, 342, 501, 650
TscAI CASTG 2 cut(s) 244, 333
TseFI GTSAC 2 cut(s) 103, 792
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 103, 792
TspDTI ATGAA 5 cut(s) 473, 570, 582, 677, 788
TspRI CASTG 2 cut(s) 244, 333
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 293, 524, 902
XceI RCATGY 3 cut(s) 146, 629, 786
ZrmI AGTACT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.