Rw1G037200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000238
Physical Location & Seq
Forward (+)
64878137 .. 64881331
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037200.1

Sequence Viewer

Length: 993 bp
ATGTGGTTCTTTAGAAGTATAGGCCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGCTACTCAAGGGATTGATGCTACTGGTCTCACTGCCATTGTTACAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATTATGGGAGTGAGGAATATGGCTGCTGGTAAAGATGTGAAAGAAGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTCAGTTCATTGTCATCTGTGAGGAAATTCGCATCAGATTACAAATCTGCTGGTCATCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCAACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCACATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTGCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTTTCCATATCATGGAGGAATCCGTTTTGATAAAATCAACGACCCATCGGAGGAAAGCTTTAAATATCTTTGGGGGTCTGAGTTTGTACTGGCTATTCACAGGTACAGCAGGTGGGCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAATTGAAGGAAGAGGGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGTAATTCTCACCAATCTTTTCCGTCATAGCAATGTTTTAAATGGGCTTGTTAATGTGCTCGGTAAAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCATTGCATCCACAAGCTGAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAACATCCCAAGCTGAAGACGAGTTGTTGGCAAAGAAACTCTGGGATTTCAGCAAGGATTTGACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

330

Amino Acids

35.86

Weight (kDa)

8.46

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 179 3.3e-26 short chain dehydrogenase
KR PF08659 31 - 131 4.4e-08 KR domain
adh_short_C2 PF13561 36 - 173 3.8e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 621
Acc36I ACCTGC 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 533
AccBSI CCGCTC 1 cut(s) 888
AccII CGCG 1 cut(s) 139
AciI CCGC 1 cut(s) 888
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 4 cut(s) 380, 531, 897, 957
AcvI CACGTG 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 2 cut(s) 609, 626
AfiI CCNNNNNNNGG 2 cut(s) 533, 571
AflIII ACRYGT 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 392, 690, 700
AjnI CCWGG 1 cut(s) 739
AleI CACNNNNGTG 1 cut(s) 741
AluBI AGCT 7 cut(s) 62, 515, 579, 658, 662, 875, 935
AluI AGCT 7 cut(s) 62, 515, 579, 658, 662, 875, 935
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 191, 638, 839
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AsiGI ACCGGT 1 cut(s) 519
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 5 cut(s) 509, 728, 745, 895, 902
AsuNHI GCTAGC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 945
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 3 cut(s) 178, 625, 851
BccI CCATC 2 cut(s) 34, 574
BciT130I CCWGG 1 cut(s) 741
BciVI GTATCC 2 cut(s) 442, 514
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 114, 659
BfuAI ACCTGC 1 cut(s) 621
BfuI GTATCC 2 cut(s) 442, 514
BisI GCNGC 3 cut(s) 192, 639, 840
BlsI GCNGC 3 cut(s) 193, 640, 841
Bme1390I CCNGG 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 5 cut(s) 67, 119, 238, 305, 874
BmtI GCTAGC 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 252, 739
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 571
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 88, 615
Bse3DI GCAATG 2 cut(s) 781, 860
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 252, 739
BseGI GGATG 3 cut(s) 319, 865, 926
BseLI CCNNNNNNNGG 2 cut(s) 533, 571
BseMI GCAATG 2 cut(s) 781, 860
BseMII CTCAG 2 cut(s) 280, 591
BseNI ACTGG 2 cut(s) 88, 615
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 3 cut(s) 178, 625, 851
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 804
BsiSI CCGG 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 533, 571
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 163, 804
Bsp143I GATC 1 cut(s) 262
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 888
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 279, 592
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 621
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 888
BsrDI GCAATG 2 cut(s) 781, 860
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 2 cut(s) 88, 615
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 252, 739
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 1 cut(s) 908
Bst6I CTCTTC 1 cut(s) 699
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 660, 675
BstDEI CTNAG 2 cut(s) 266, 600
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 319, 865, 926
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 739
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 178, 625, 851
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 2 cut(s) 442, 514
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 319, 865, 926
BtsI GCAGTG 3 cut(s) 90, 149, 234
BtsIMutI CAGTG 4 cut(s) 90, 126, 149, 234
BveI ACCTGC 1 cut(s) 621
Cac8I GCNNGC 2 cut(s) 660, 675
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 608, 625
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 164, 253, 533, 674
CviQI GTAC 2 cut(s) 608, 625
DdeI CTNAG 2 cut(s) 266, 600
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 2 cut(s) 583, 783
DraIII CACNNNGTG 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 4 cut(s) 380, 531, 897, 957
Eco72I CACGTG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 167, 256, 536, 677
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 4 cut(s) 163, 252, 532, 673
FauNDI CATATG 1 cut(s) 643
Fnu4HI GCNGC 3 cut(s) 192, 639, 840
FokI GGATG 3 cut(s) 306, 852, 913
Fsp4HI GCNGC 3 cut(s) 192, 639, 840
FspBI CTAG 2 cut(s) 114, 659
GluI GCNGC 3 cut(s) 192, 639, 840
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 520
Hin1II CATG 4 cut(s) 167, 256, 536, 677
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 1 cut(s) 540
HpaII CCGG 1 cut(s) 520
HphI GGTGA 5 cut(s) 509, 728, 745, 895, 902
Hpy188I TCNGA 5 cut(s) 301, 511, 571, 601, 904
HpyAV CCTTC 3 cut(s) 479, 694, 872
HpyCH4III ACNGT 1 cut(s) 908
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 9 cut(s) 149, 347, 467, 473, 641, 673, 725, 731, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 266, 600
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 4 cut(s) 167, 256, 536, 677
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 107, 836
Lsp1109I GCAGC 3 cut(s) 178, 625, 851
LweI GCATC 5 cut(s) 67, 119, 238, 305, 874
MaeI CTAG 2 cut(s) 114, 659
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 888
MboI GATC 1 cut(s) 262
MboII GAAGA 4 cut(s) 36, 68, 716, 950
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 163, 804
MluCI AATT 7 cut(s) 243, 290, 336, 351, 492, 695, 747
MluI ACGCGT 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 240, 426
MnlI CCTC 7 cut(s) 174, 279, 333, 517, 530, 565, 700
MseI TTAA 7 cut(s) 222, 335, 339, 582, 782, 795, 819
MslI CAYNNNNRTG 2 cut(s) 741, 774
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 741
MunI CAATTG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 59
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 643
NdeII GATC 1 cut(s) 262
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 4 cut(s) 167, 256, 536, 677
NlaIV GGNNCC 1 cut(s) 160
NspI RCATGY 1 cut(s) 677
OliI CACNNNNGTG 1 cut(s) 741
PacI TTAATTAA 1 cut(s) 339
PaeI GCATGC 1 cut(s) 677
PaqCI CACCTGC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 540
PflMI CCANNNNNTGG 1 cut(s) 533
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 3 cut(s) 193, 640, 841
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 739
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 609, 626
RsaNI GTAC 2 cut(s) 608, 625
RseI CAYNNNNRTG 2 cut(s) 741, 774
SaqAI TTAA 7 cut(s) 222, 335, 339, 582, 782, 795, 819
SatI GCNGC 3 cut(s) 192, 639, 840
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 163, 804
SfaNI GCATC 5 cut(s) 67, 119, 238, 305, 874
SmiMI CAYNNNNRTG 2 cut(s) 741, 774
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 677
Sse9I AATT 7 cut(s) 243, 290, 336, 351, 492, 695, 747
SsiI CCGC 1 cut(s) 888
SspI AATATT 2 cut(s) 896, 913
SspMI CTAG 2 cut(s) 114, 659
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 908
TaiI ACGT 1 cut(s) 472
TasI AATT 7 cut(s) 243, 290, 336, 351, 492, 695, 747
TatI WGTACW 1 cut(s) 607
TfiI GAWTC 1 cut(s) 540
Tru1I TTAA 7 cut(s) 222, 335, 339, 582, 782, 795, 819
Tru9I TTAA 7 cut(s) 222, 335, 339, 582, 782, 795, 819
TscAI CASTG 4 cut(s) 97, 133, 156, 241
TseI GCWGC 3 cut(s) 191, 638, 839
TspDTI ATGAA 2 cut(s) 261, 470
TspGWI ACGGA 2 cut(s) 533, 755
TspRI CASTG 4 cut(s) 97, 133, 156, 241
Van91I CCANNNNNTGG 1 cut(s) 533
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 677
XspI CTAG 2 cut(s) 114, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.