Rw7G014450

Short-chain dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
14145742 .. 14149575
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014450.1

Sequence Viewer

Length: 1023 bp
ATGAATGATTATAACCCTCTTTCTCTTCATCCTCTACAATGGAGTCAATCTAGCCCTCTCAAACCAAAAAAGCAATCTAGCTCTTTGTGGCCATCTGGGTTCTCAGCCTCTTCCACAGCAGAGGAAGTTACTCGAGGGATTGATGGAACTGGTCTCACAGCCATTGTTACAGGAGCCACAAGTGGTCTTGGTTTAGAGACATCGCGCGTTCTTGCATTGCGTGGTGTCCATGTAGTTATGGCAGTAAGGAACACAAATGCAGGGGAAAATGTCAAAGAAGCAATCCTTAAAGAAATCCCCAATGCTAGAGTAGATGTTATGGAGTTAGATCTCAGCTCATTGGCATCTGTAAGAAAGTTTGCAGAAGAGTATAATTCCTTGGGCCTTTCACTGAACATCCTTATTAACAATGCAGGGGTTATAACACCATTCAAGCTTTCTCAAGACAACATAGAGCTGCATTTTGCAACTAATCACTTAGGGCACTTTCTTCTCACAAATCTTTTGTTGGAGACCATGAAACGCACATCGCGAGAAAGCAACAAAGAGGGAAGAATTGTAAATATCTCGTCAATGTGCCATCAATATGTGTACCGTGAAGGAATTCGTTTTGATAAAATTAATGATGAATCAAGCTACTACAAATATTTGGCTTATGGACAATCCAAGCTTGCTAATGTATTACATGCTAATGAGCTTACAAGGCGTCTGAAGGCAGAAGGAGTGGAGATCATTGTTAATTCTCTTCATCCGGGATCAATCCAGACCAATATCGTGCGCTTTGATAATGGCATGTTGCATTATATTGTGAAGGTGCTGGGTGTATTTATCATTCCGTTTATAAAAACTGTTCAACAGGGTGCAGCAACCACATGCTTTGTGGCACTCCATCCACAAGTTAAGGGAGTAAGCGGCGAATATTTTGCAGACTGCAACATTGCCAAACCGAGCAATCAAGCCAAAGATGCAGATTTGGCTTCCAAACTTTGGGATTTTAGCTTGAGCATGACTAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

340

Amino Acids

37.47

Weight (kDa)

8.61

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 53 - 196 2.7e-25 short chain dehydrogenase
KR PF08659 53 - 144 4.9e-07 KR domain
adh_short_C2 PF13561 58 - 264 1.4e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 12, 422, 842
AccB7I CCANNNNNTGG 1 cut(s) 987
AccII CGCG 3 cut(s) 205, 207, 532
AciI CCGC 1 cut(s) 912
AclWI GGATC 1 cut(s) 763
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 1 cut(s) 731
AcyI GRCGYC 1 cut(s) 706
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 1 cut(s) 987
AgsI TTSAA 2 cut(s) 433, 854
AluBI AGCT 8 cut(s) 81, 336, 436, 457, 636, 670, 697, 999
AluI AGCT 8 cut(s) 81, 336, 436, 457, 636, 670, 697, 999
Alw26I GTCTC 3 cut(s) 158, 191, 506
AlwI GGATC 1 cut(s) 763
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 2 cut(s) 89, 382
ApeKI GCWGC 2 cut(s) 457, 863
ApoI RAATTY 1 cut(s) 603
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 2 cut(s) 207, 780
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 753
AvaI CYCGRG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 486
BalI TGGCCA 1 cut(s) 91
BbvI GCAGC 2 cut(s) 444, 875
BccI CCATC 4 cut(s) 100, 137, 588, 897
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 3 cut(s) 158, 191, 506
BfaI CTAG 3 cut(s) 51, 78, 306
BglII AGATCT 1 cut(s) 328
BisI GCNGC 3 cut(s) 458, 864, 913
BlsI GCNGC 3 cut(s) 459, 865, 914
Bme1390I CCNGG 1 cut(s) 753
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 353, 955
BpuEI CTTGAG 3 cut(s) 426, 1001, 1021
BpuMI CCSGG 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 706
BsaI GGTCTC 2 cut(s) 158, 506
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 1 cut(s) 987
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 2 cut(s) 215, 936
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 4 cut(s) 28, 396, 748, 889
BseLI CCNNNNNNNGG 1 cut(s) 987
BseMI GCAATG 2 cut(s) 215, 936
BseMII CTCAG 2 cut(s) 117, 346
BseNI ACTGG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 2 cut(s) 444, 875
BseYI CCCAGC 1 cut(s) 817
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 3 cut(s) 205, 207, 532
BshFI GGCC 2 cut(s) 91, 384
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 752
BslI CCNNNNNNNGG 1 cut(s) 987
BsmAI GTCTC 3 cut(s) 158, 191, 506
BsnI GGCC 2 cut(s) 91, 384
Bso31I GGTCTC 2 cut(s) 158, 506
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 3 cut(s) 328, 729, 755
Bsp68I TCGCGA 1 cut(s) 532
BspACI CCGC 1 cut(s) 912
BspANI GGCC 2 cut(s) 91, 384
BspCNI CTCAG 2 cut(s) 116, 345
BspFNI CGCG 3 cut(s) 205, 207, 532
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 763
BspTNI GGTCTC 2 cut(s) 158, 506
BsrDI GCAATG 2 cut(s) 215, 936
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 328, 729, 755
BssNI GRCGYC 1 cut(s) 706
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 596, 850
Bst6I CTCTTC 4 cut(s) 30, 115, 360, 750
BstACI GRCGYC 1 cut(s) 706
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 103, 332, 478
BstF5I GGATG 4 cut(s) 28, 396, 748, 889
BstFNI CGCG 3 cut(s) 205, 207, 532
BstHHI GCGC 2 cut(s) 207, 780
BstKTI GATC 3 cut(s) 331, 732, 758
BstMAI GTCTC 3 cut(s) 158, 191, 506
BstMBI GATC 3 cut(s) 328, 729, 755
BstMWI GCNNNNNNNGC 3 cut(s) 703, 965, 974
BstNSI RCATGY 3 cut(s) 689, 796, 876
BstSCI CCNGG 1 cut(s) 751
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 3 cut(s) 205, 207, 532
BstV1I GCAGC 2 cut(s) 444, 875
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 2 cut(s) 91, 384
BtgZI GCGATG 2 cut(s) 186, 513
BtsCI GGATG 4 cut(s) 28, 396, 748, 889
BtsIMutI CAGTG 1 cut(s) 389
BtuMI TCGCGA 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 672
CfoI GCGC 2 cut(s) 207, 780
Cfr13I GGNCC 1 cut(s) 382
CseI GACGC 1 cut(s) 695
Csp6I GTAC 1 cut(s) 592
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 6 cut(s) 230, 517, 686, 793, 873, 1006
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 3 cut(s) 103, 332, 478
DpnI GATC 3 cut(s) 330, 731, 757
DpnII GATC 3 cut(s) 328, 729, 755
EaeI YGGCCR 1 cut(s) 89
Eam1104I CTCTTC 4 cut(s) 30, 115, 360, 750
EarI CTCTTC 4 cut(s) 30, 115, 360, 750
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 2 cut(s) 158, 506
Eco57I CTGAAG 1 cut(s) 731
Eco88I CYCGRG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 6 cut(s) 233, 520, 689, 796, 876, 1009
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 6 cut(s) 229, 516, 685, 792, 872, 1005
Fnu4HI GCNGC 3 cut(s) 458, 864, 913
FokI GGATG 4 cut(s) 15, 383, 735, 876
Fsp4HI GCNGC 3 cut(s) 458, 864, 913
FspBI CTAG 3 cut(s) 51, 78, 306
GlaI GCGC 2 cut(s) 206, 779
GluI GCNGC 3 cut(s) 458, 864, 913
GsaI CCCAGC 1 cut(s) 821
HaeIII GGCC 2 cut(s) 91, 384
HapII CCGG 1 cut(s) 752
HgaI GACGC 1 cut(s) 695
HhaI GCGC 2 cut(s) 207, 780
Hin1I GRCGYC 1 cut(s) 706
Hin1II CATG 6 cut(s) 233, 520, 689, 796, 876, 1009
Hin6I GCGC 2 cut(s) 205, 778
HinP1I GCGC 2 cut(s) 205, 778
HindIII AAGCTT 2 cut(s) 434, 668
HinfI GANTC 2 cut(s) 43, 629
HpaII CCGG 1 cut(s) 752
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 1 cut(s) 711
Hpy188III TCNNGA 3 cut(s) 443, 531, 763
Hpy8I GTNNAC 1 cut(s) 592
HpyAV CCTTC 4 cut(s) 593, 706, 713, 805
HpyCH4III ACNGT 2 cut(s) 596, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 703, 965, 974
HpyF3I CTNAG 3 cut(s) 103, 332, 478
Hsp92I GRCGYC 1 cut(s) 706
Hsp92II CATG 6 cut(s) 233, 520, 689, 796, 876, 1009
HspAI GCGC 2 cut(s) 205, 778
Kzo9I GATC 3 cut(s) 328, 729, 755
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 9 cut(s) 81, 135, 156, 246, 399, 765, 776, 803, 842
Lsp1109I GCAGC 2 cut(s) 444, 875
LweI GCATC 2 cut(s) 353, 955
MaeI CTAG 3 cut(s) 51, 78, 306
MaeIII GTNAC 2 cut(s) 127, 166
MalI GATC 3 cut(s) 330, 731, 757
MboI GATC 3 cut(s) 328, 729, 755
MboII GAAGA 6 cut(s) 17, 102, 377, 482, 564, 737
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 486
MlsI TGGCCA 1 cut(s) 91
MluCI AATT 5 cut(s) 373, 555, 603, 618, 739
MluNI TGGCCA 1 cut(s) 91
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 7 cut(s) 27, 42, 66, 115, 118, 128, 541
Mox20I TGGCCA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 603
MscI TGGCCA 1 cut(s) 91
MseI TTAA 5 cut(s) 288, 405, 621, 738, 900
MslI CAYNNNNRTG 2 cut(s) 585, 690
Msp20I TGGCCA 1 cut(s) 91
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 753
MvnI CGCG 3 cut(s) 205, 207, 532
MwoI GCNNNNNNNGC 3 cut(s) 703, 965, 974
NciI CCSGG 1 cut(s) 753
NdeII GATC 3 cut(s) 328, 729, 755
NlaIII CATG 6 cut(s) 233, 520, 689, 796, 876, 1009
NlaIV GGNNCC 1 cut(s) 175
NruI TCGCGA 1 cut(s) 532
NspI RCATGY 3 cut(s) 689, 796, 876
PaeR7I CTCGAG 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 629
PflMI CCANNNNNTGG 1 cut(s) 987
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 3 cut(s) 459, 865, 914
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 621
PsiI TTATAA 3 cut(s) 12, 422, 842
PspFI CCCAGC 1 cut(s) 817
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 382
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 1 cut(s) 328
RruI TCGCGA 1 cut(s) 532
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
RseI CAYNNNNRTG 2 cut(s) 585, 690
SaqAI TTAA 5 cut(s) 288, 405, 621, 738, 900
SatI GCNGC 3 cut(s) 458, 864, 913
Sau3AI GATC 3 cut(s) 328, 729, 755
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 1 cut(s) 486
SetI ASST 9 cut(s) 83, 338, 438, 459, 638, 672, 699, 816, 1001
SfaNI GCATC 2 cut(s) 353, 955
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmiMI CAYNNNNRTG 2 cut(s) 585, 690
SmlI CTYRAG 4 cut(s) 132, 441, 1000, 1016
SmoI CTYRAG 4 cut(s) 132, 441, 1000, 1016
Sse9I AATT 5 cut(s) 373, 555, 603, 618, 739
SsiI CCGC 1 cut(s) 912
SspI AATATT 2 cut(s) 647, 920
SspMI CTAG 3 cut(s) 51, 78, 306
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 596, 850
TaqI TCGA 1 cut(s) 133
TasI AATT 5 cut(s) 373, 555, 603, 618, 739
TauI GCSGC 1 cut(s) 915
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 5 cut(s) 288, 405, 621, 738, 900
Tru9I TTAA 5 cut(s) 288, 405, 621, 738, 900
TscAI CASTG 1 cut(s) 396
TseI GCWGC 2 cut(s) 457, 863
TspDTI ATGAA 5 cut(s) 17, 17, 533, 642, 737
TspGWI ACGGA 1 cut(s) 825
TspRI CASTG 1 cut(s) 396
Van91I CCANNNNNTGG 1 cut(s) 987
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 1 cut(s) 603
XceI RCATGY 3 cut(s) 689, 796, 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XhoI CTCGAG 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 3 cut(s) 51, 78, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.