Rh1BG382700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000238
Physical Location & Seq
Forward (+)
51114231 .. 51117530
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG382700.1

Sequence Viewer

Length: 894 bp
ATGGGAATATTTTCTTTGGCTCCTGATGTTGTATTGACAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGATGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTCAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCTGCTGGTCGTCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTTCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTTTGCATATCGTGAAGGAATCCGTTTTGATAGAATCAACGACCCATCAGGGTACAGCAGTTGGCCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAAATAAAGGAAGATGGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGCAATTCTCACCAATCTTTTCCGTCATAACATTGTTATCAATGGTAATCATGTCATTAATGGGCTTGTTAATGTGCTCGGTAGAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCACTGCATCCGCAAGCTAAAGGGGTTAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAAGACCTCAAGCTGAAGATGAGTTGTTGGCAAAGAAGCTCTGGGATTTCAGCAAGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

297

Amino Acids

32.25

Weight (kDa)

9.54

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 10 - 154 1.1e-24 short chain dehydrogenase
KR PF08659 10 - 109 2.8e-07 KR domain
adh_short_C2 PF13561 14 - 265 8.8e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 128, 770, 789
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 3 cut(s) 314, 465, 858
AdeI CACNNNGTG 1 cut(s) 89
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 71
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 3 cut(s) 326, 408, 573
AjnI CCWGG 1 cut(s) 622
AleI CACNNNNGTG 1 cut(s) 624
AluBI AGCT 6 cut(s) 449, 541, 545, 776, 836, 862
AluI AGCT 6 cut(s) 449, 541, 545, 776, 836, 862
Alw21I GWGCWC 1 cut(s) 705
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 518
ApeKI GCWGC 2 cut(s) 125, 740
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AseI ATTAAT 1 cut(s) 684
AsiGI ACCGGT 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 10
AsuHPI GGTGA 4 cut(s) 443, 611, 628, 803
AsuNHI GCTAGC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 499, 532
BanI GGYRCC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 2 cut(s) 112, 752
BccI CCATC 2 cut(s) 508, 584
BciT130I CCWGG 1 cut(s) 624
BciVI GTATCC 2 cut(s) 376, 448
BclI TGATCA 1 cut(s) 102
BfaI CTAG 2 cut(s) 48, 542
BfuI GTATCC 2 cut(s) 376, 448
BisI GCNGC 2 cut(s) 126, 741
BlsI GCNGC 2 cut(s) 127, 742
Bme1390I CCNGG 1 cut(s) 624
BmiI GGNNCC 2 cut(s) 21, 94
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 5 cut(s) 53, 136, 172, 239, 775
BmtI GCTAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 816
BsaJI CCNNGG 2 cut(s) 186, 622
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 453
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 186, 622
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 2 cut(s) 112, 752
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 92
BshTI ACCGGT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 527
BsnI GGCC 1 cut(s) 520
Bsp1286I GDGCHC 2 cut(s) 97, 705
Bsp143I GATC 2 cut(s) 102, 196
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 128, 770, 789
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 1 cut(s) 213
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 21, 94
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 186, 622
BssMI GATC 2 cut(s) 102, 196
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 809
BstC8I GCNNGC 4 cut(s) 522, 543, 558, 774
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 2 cut(s) 105, 199
BstMBI GATC 2 cut(s) 102, 196
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 622
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 112, 752
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 196
BsuI GTATCC 2 cut(s) 376, 448
BsuRI GGCC 1 cut(s) 520
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 766
BtsI GCAGTG 3 cut(s) 83, 168, 761
BtsIMutI CAGTG 4 cut(s) 60, 83, 168, 761
Cac8I GCNNGC 4 cut(s) 522, 543, 558, 774
Cfr10I RCCGGY 1 cut(s) 453
Csp6I GTAC 1 cut(s) 508
CspAI ACCGGT 1 cut(s) 453
CviAII CATG 5 cut(s) 98, 106, 187, 557, 677
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 104, 198
DpnII GATC 2 cut(s) 102, 196
DraIII CACNNNGTG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 186
Eco57I CTGAAG 3 cut(s) 314, 465, 858
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 5 cut(s) 101, 109, 190, 560, 680
FatI CATG 5 cut(s) 97, 105, 186, 556, 676
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 126, 741
FokI GGATG 1 cut(s) 753
Fsp4HI GCNGC 2 cut(s) 126, 741
FspBI CTAG 2 cut(s) 48, 542
GluI GCNGC 2 cut(s) 126, 741
HaeIII GGCC 1 cut(s) 520
HapII CCGG 1 cut(s) 454
Hin1II CATG 5 cut(s) 101, 109, 190, 560, 680
HinfI GANTC 2 cut(s) 474, 489
HpaII CCGG 1 cut(s) 454
HphI GGTGA 4 cut(s) 443, 611, 628, 803
Hpy188I TCNGA 3 cut(s) 235, 445, 805
Hpy188III TCNNGA 2 cut(s) 23, 467
HpyAV CCTTC 2 cut(s) 413, 464
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4IV ACGT 1 cut(s) 403
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 5 cut(s) 101, 109, 190, 560, 680
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 102, 196
LmnI GCTCC 3 cut(s) 25, 41, 737
Lsp1109I GCAGC 2 cut(s) 112, 752
LweI GCATC 5 cut(s) 53, 136, 172, 239, 775
MaeI CTAG 2 cut(s) 48, 542
MaeII ACGT 1 cut(s) 403
MalI GATC 2 cut(s) 104, 198
MboI GATC 2 cut(s) 102, 196
MboII GAAGA 2 cut(s) 599, 851
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 97, 705
MluCI AATT 6 cut(s) 177, 224, 270, 285, 426, 630
MluI ACGCGT 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 174, 360
MnlI CCTC 5 cut(s) 108, 213, 267, 451, 840
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 6 cut(s) 156, 269, 273, 684, 696, 720
MslI CAYNNNNRTG 2 cut(s) 110, 624
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 526
NdeII GATC 2 cut(s) 102, 196
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 5 cut(s) 101, 109, 190, 560, 680
NlaIV GGNNCC 2 cut(s) 21, 94
NspI RCATGY 1 cut(s) 560
OliI CACNNNNGTG 1 cut(s) 624
PacI TTAATTAA 1 cut(s) 273
PaeI GCATGC 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 474, 489
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 2 cut(s) 127, 742
PshBI ATTAAT 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 2 cut(s) 21, 94
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 110, 624
SaqAI TTAA 6 cut(s) 156, 269, 273, 684, 696, 720
SatI GCNGC 2 cut(s) 126, 741
Sau3AI GATC 2 cut(s) 102, 196
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 2 cut(s) 97, 705
SetI ASST 9 cut(s) 355, 406, 451, 543, 547, 778, 832, 838, 864
SfaNI GCATC 5 cut(s) 53, 136, 172, 239, 775
SmiMI CAYNNNNRTG 2 cut(s) 110, 624
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
SphI GCATGC 1 cut(s) 560
Sse9I AATT 6 cut(s) 177, 224, 270, 285, 426, 630
SsiI CCGC 3 cut(s) 128, 770, 789
SspI AATATT 3 cut(s) 9, 797, 814
SspMI CTAG 2 cut(s) 48, 542
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 809
TaiI ACGT 1 cut(s) 406
TasI AATT 6 cut(s) 177, 224, 270, 285, 426, 630
TfiI GAWTC 2 cut(s) 474, 489
Tru1I TTAA 6 cut(s) 156, 269, 273, 684, 696, 720
Tru9I TTAA 6 cut(s) 156, 269, 273, 684, 696, 720
TscAI CASTG 4 cut(s) 67, 90, 175, 768
TseI GCWGC 2 cut(s) 125, 740
TspDTI ATGAA 2 cut(s) 195, 404
TspGWI ACGGA 2 cut(s) 467, 638
TspRI CASTG 4 cut(s) 67, 90, 175, 768
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 2 cut(s) 48, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.