pycom07g25040

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000238
Physical Location & Seq
Forward (+)
25484591 .. 25485068
478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25040.1

Sequence Viewer

Length: 354 bp
ATGAAGAAGACGATGTGGTTCTTCAGAAGAAAAGGGCCATCTGGGTTCTCATCATCTTCCACAGCGGAGAAAGTTACTGAACGGATTGATGCCACTGGTCTCACCGCCATTGTTACACGAGCATCTAGTGGTATTGGCACCGAAACTGCACGCGTTCTTGCACTGCGTGGCGCCCATGTGGTTATGGCAGTGAGGAACATGGCCGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATCCCCAGTGCCAAAGTTGATGCCATGGAATTCGATCTGAGTTCGTTATCATCTGTTAGGAAATTCGCATCGGATTTCAATTCCGCCGGTCTTCCTCTTAACATCTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

118

Amino Acids

12.52

Weight (kDa)

10.41

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 35 - 116 4.6e-10 short chain dehydrogenase
adh_short_C2 PF13561 42 - 109 1.5e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 137, 170
AccII CGCG 1 cut(s) 153
AciI CCGC 4 cut(s) 65, 105, 204, 324
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 2 cut(s) 269, 302
AcuI CTGAAG 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 2 cut(s) 35, 201
ApoI RAATTY 2 cut(s) 269, 302
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 94
BanI GGYRCC 2 cut(s) 137, 170
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 14, 323
BccI CCATC 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 139, 172
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 5 cut(s) 79, 131, 205, 250, 317
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 14, 323
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 264
Bse118I RCCGGY 2 cut(s) 206, 326
Bse1I ACTGG 2 cut(s) 100, 246
BseDI CCNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 100, 246
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 37, 203
BshNI GGYRCC 2 cut(s) 137, 170
BsiSI CCGG 2 cut(s) 207, 327
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 37, 203
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 4 cut(s) 65, 105, 204, 324
BspANI GGCC 2 cut(s) 37, 203
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 139, 172
BspT107I GGYRCC 2 cut(s) 137, 170
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 206, 326
BsrI ACTGG 2 cut(s) 100, 246
BssAI RCCGGY 2 cut(s) 206, 326
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 274
BstUI CGCG 1 cut(s) 153
BstV2I GAAGAC 2 cut(s) 14, 323
BsuRI GGCC 2 cut(s) 37, 203
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 2 cut(s) 161, 195
BtsIMutI CAGTG 4 cut(s) 93, 161, 195, 253
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 2 cut(s) 206, 326
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 176, 199, 265
CviJI RGCY 2 cut(s) 37, 203
CviKI_1 RGCY 2 cut(s) 37, 203
DdeI CTNAG 1 cut(s) 278
DinI GGCGCC 1 cut(s) 172
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraIII CACNNNGTG 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 201
EciI GGCGGA 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 264
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 179, 202, 268
FaiI YATR 4 cut(s) 177, 185, 200, 266
FatI CATG 3 cut(s) 175, 198, 264
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 2 cut(s) 37, 203
HapII CCGG 2 cut(s) 207, 327
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 3 cut(s) 179, 202, 268
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HpaII CCGG 2 cut(s) 207, 327
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 26, 279, 313
HpyAV CCTTC 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 149, 161, 218
HpyF3I CTNAG 1 cut(s) 278
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 3 cut(s) 179, 202, 268
HspAI GCGC 1 cut(s) 171
KasI GGCGCC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 27, 81, 220, 259, 340
LweI GCATC 5 cut(s) 79, 131, 205, 250, 317
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 73, 112
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 6 cut(s) 13, 16, 19, 39, 48, 323
MluCI AATT 3 cut(s) 269, 302, 319
MluI ACGCGT 1 cut(s) 151
Mly113I GGCGCC 1 cut(s) 171
MnlI CCTC 2 cut(s) 186, 345
MseI TTAA 2 cut(s) 339, 347
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 207, 327
MvnI CGCG 1 cut(s) 153
NarI GGCGCC 1 cut(s) 171
NcoI CCATGG 1 cut(s) 264
NdeII GATC 1 cut(s) 274
NlaIII CATG 3 cut(s) 179, 202, 268
NlaIV GGNNCC 2 cut(s) 139, 172
PkrI GCNGC 1 cut(s) 205
PluTI GGCGCC 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 139, 172
PspPI GGNCC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 339, 347
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 35
SfaNI GCATC 5 cut(s) 79, 131, 205, 250, 317
SfoI GGCGCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 3 cut(s) 269, 302, 319
SsiI CCGC 4 cut(s) 65, 105, 204, 324
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 269, 302, 319
TauI GCSGC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 339, 347
Tru9I TTAA 2 cut(s) 339, 347
TscAI CASTG 4 cut(s) 100, 168, 195, 253
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 4 cut(s) 100, 168, 195, 253
XapI RAATTY 2 cut(s) 269, 302
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.