FvH4_5g02640

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000238
Physical Location & Seq
Forward (+)
1571341 .. 1575381
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02640.t7

Sequence Viewer

Length: 948 bp
ATGTGGATATTTGGGTGGAAAGGGCCTTCTGGGTTTTCAGCACGCTCTACAGCAGAGGATGTTACTCAAGGGATTGATGGAATTGGCCTCACTGCCCTTGTTACAGGAGCTTCAAGTGGTCTTGGTTTGGAAACAACACGTGTTCTAGCATTGCGTGGTGTTCATGTCATCATGGCAGTAAGGAATGCAGATGCGGGTAGGGATGTCAAAGAATCAATACTTAAGGAAGTCCCCACTGCCAAGATTGATGTGATGGAACTAGATCTCAGCTCATTGGCATCAGTGAGAAAATTTGCATCGGATTACAAGTTATCTGGTCATCCATTGAATATCCTGATTAATAATGCAGGTGTTATGGGAACTCCATTCATGCTTTCACATGATAACATTGAAATGCAGTTTGCAACCAACCATTTAGGTCATTTTCTTTTGACAAACCTTCTATTGGATACCATGAAAAAGACAGCAAATGAAAGCAAGAAAGAGGGAAGGATCGTGATTGTATCATCCGAGGGTCATCGATTTACATATCGTGAGGGGGTTCGCTTTGATATGATTAATAATGAATCAGCGTACAACAGTTTGTATGCTTATGGACAATCAAAGCTAGCCAACATATTGCATGCTAGCGAGCTTGCAAAGCACTTGAAGGCAGAAGGGGTTGATATAACTGCTAATTCCCTTCATCCTGGATCTATTGTTACCAATCTTCTACGACACCACAGTTACATAAATGTTGTTGCTAATATGGTTGGAAAATATTTTCTTAAAAATGTGCACCAGGGAGCTGCAACTCAATGCTATTTGGCATTGCATCCGCAAGTTAAGGGTGTCAGTGGTGAGTATTTTATGGACAACAACATTGCCAATCCGACAGCCCTGGCTAAAGATGCAGAATTGGCAAAGAAGCTATGGGACTTCAGTCTGAGCCTGACAGAGCCAAAGTAA

Protein Analysis

316

Amino Acids

34.38

Weight (kDa)

7.88

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 172 3.3e-24 short chain dehydrogenase
KR PF08659 31 - 133 2e-08 KR domain
adh_short_C2 PF13561 36 - 242 7.4e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AciI CCGC 2 cut(s) 194, 818
AclWI GGATC 2 cut(s) 500, 700
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 904
AcvI CACGTG 1 cut(s) 140
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 445
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 2 cut(s) 137, 139
AgsI TTSAA 4 cut(s) 114, 328, 392, 649
AjnI CCWGG 3 cut(s) 688, 780, 879
AluBI AGCT 6 cut(s) 110, 270, 607, 634, 788, 910
AluI AGCT 6 cut(s) 110, 270, 607, 634, 788, 910
Alw21I GWGCWC 1 cut(s) 780
Alw44I GTGCAC 1 cut(s) 776
AlwI GGATC 2 cut(s) 500, 700
AoxI GGCC 2 cut(s) 23, 85
ApaLI GTGCAC 1 cut(s) 776
ApeKI GCWGC 1 cut(s) 788
ApoI RAATTY 1 cut(s) 290
AseI ATTAAT 2 cut(s) 339, 558
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 851
AsuNHI GCTAGC 2 cut(s) 607, 626
BaeGI GKGCMC 1 cut(s) 780
BbrPI CACGTG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 1 cut(s) 775
BccI CCATC 2 cut(s) 71, 247
BciT130I CCWGG 3 cut(s) 690, 782, 881
BciVI GTATCC 1 cut(s) 442
BfaI CTAG 4 cut(s) 146, 260, 608, 627
BfmI CTRYAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 442
BglII AGATCT 1 cut(s) 262
BisI GCNGC 1 cut(s) 789
BlsI GCNGC 1 cut(s) 790
Bme1390I CCNGG 3 cut(s) 690, 782, 881
BmgT120I GGNCC 1 cut(s) 23
BmrFI CCNGG 3 cut(s) 690, 782, 881
BmsI GCATC 5 cut(s) 181, 287, 305, 823, 880
BmtI GCTAGC 2 cut(s) 611, 630
BoxI GACNNNNGTC 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 520
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 510, 781, 879
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse3DI GCAATG 3 cut(s) 149, 809, 861
BseBI CCWGG 3 cut(s) 690, 782, 881
BseCI ATCGAT 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 510, 781, 879
BseGI GGATG 6 cut(s) 64, 208, 319, 506, 685, 814
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 3 cut(s) 149, 809, 861
BseMII CTCAG 2 cut(s) 280, 917
BseSI GKGCMC 1 cut(s) 780
BseXI GCAGC 1 cut(s) 775
BshFI GGCC 2 cut(s) 25, 87
BshVI ATCGAT 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 780
BslFI GGGAC 2 cut(s) 215, 929
BslI CCNNNNNNNGG 1 cut(s) 445
BsmFI GGGAC 2 cut(s) 215, 929
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 2 cut(s) 25, 87
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 3 cut(s) 262, 492, 692
BspACI CCGC 2 cut(s) 194, 818
BspANI GGCC 2 cut(s) 25, 87
BspCNI CTCAG 2 cut(s) 279, 918
BspDI ATCGAT 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 338
BspOI GCTAGC 2 cut(s) 611, 630
BspPI GGATC 2 cut(s) 500, 700
BspTI CTTAAG 1 cut(s) 221
BsrDI GCAATG 3 cut(s) 149, 809, 861
BssECI CCNNGG 3 cut(s) 510, 781, 879
BssMI GATC 3 cut(s) 262, 492, 692
Bst2UI CCWGG 3 cut(s) 690, 782, 881
Bst4CI ACNGT 2 cut(s) 581, 725
BstAFI CTTAAG 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 6 cut(s) 43, 609, 624, 628, 632, 636
BstDEI CTNAG 2 cut(s) 266, 926
BstF5I GGATG 6 cut(s) 64, 208, 319, 506, 685, 814
BstKTI GATC 3 cut(s) 265, 495, 695
BstMBI GATC 3 cut(s) 262, 492, 692
BstMWI GCNNNNNNNGC 3 cut(s) 640, 890, 899
BstNI CCWGG 3 cut(s) 690, 782, 881
BstNSI RCATGY 1 cut(s) 626
BstPAI GACNNNNGTC 1 cut(s) 921
BstSCI CCNGG 3 cut(s) 688, 780, 879
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 780
BstV1I GCAGC 1 cut(s) 775
BstX2I RGATCY 2 cut(s) 262, 692
BstYI RGATCY 2 cut(s) 262, 692
Bsu15I ATCGAT 1 cut(s) 520
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 25, 87
BsuTUI ATCGAT 1 cut(s) 520
BtsCI GGATG 6 cut(s) 64, 208, 319, 506, 685, 814
BtsI GCAGTG 2 cut(s) 90, 234
BtsIMutI CAGTG 4 cut(s) 90, 234, 288, 841
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 6 cut(s) 43, 609, 624, 628, 632, 636
Cfr13I GGNCC 1 cut(s) 23
ClaI ATCGAT 1 cut(s) 520
Csp6I GTAC 1 cut(s) 574
CviAII CATG 6 cut(s) 164, 172, 370, 380, 454, 623
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 266, 926
DpnI GATC 3 cut(s) 264, 494, 694
DpnII GATC 3 cut(s) 262, 492, 692
Eco57I CTGAAG 1 cut(s) 904
Eco72I CACGTG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 3 cut(s) 688, 780, 879
FaeI CATG 6 cut(s) 167, 175, 373, 383, 457, 626
FaqI GGGAC 2 cut(s) 215, 929
FatI CATG 6 cut(s) 163, 171, 369, 379, 453, 622
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 789
FokI GGATG 6 cut(s) 71, 215, 306, 493, 672, 801
Fsp4HI GCNGC 1 cut(s) 789
FspBI CTAG 4 cut(s) 146, 260, 608, 627
GluI GCNGC 1 cut(s) 789
HaeIII GGCC 2 cut(s) 25, 87
Hin1II CATG 6 cut(s) 167, 175, 373, 383, 457, 626
HinfI GANTC 2 cut(s) 212, 566
HphI GGTGA 1 cut(s) 851
Hpy166II GTNNAC 1 cut(s) 778
Hpy188I TCNGA 4 cut(s) 301, 511, 873, 927
Hpy188III TCNNGA 3 cut(s) 334, 496, 533
Hpy8I GTNNAC 1 cut(s) 778
HpyAV CCTTC 6 cut(s) 36, 449, 483, 643, 650, 692
HpyCH4III ACNGT 2 cut(s) 581, 725
HpyCH4IV ACGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 890, 899
HpyF3I CTNAG 2 cut(s) 266, 926
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 6 cut(s) 167, 175, 373, 383, 457, 626
Kzo9I GATC 3 cut(s) 262, 492, 692
LmnI GCTCC 2 cut(s) 107, 785
Lsp1109I GCAGC 1 cut(s) 775
LweI GCATC 5 cut(s) 181, 287, 305, 823, 880
MaeI CTAG 4 cut(s) 146, 260, 608, 627
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 4 cut(s) 61, 100, 700, 725
MalI GATC 3 cut(s) 264, 494, 694
MboI GATC 3 cut(s) 262, 492, 692
MboII GAAGA 1 cut(s) 701
MflI RGATCY 2 cut(s) 262, 692
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 4 cut(s) 81, 290, 676, 896
MmeI TCCRAC 2 cut(s) 733, 896
MnlI CCTC 5 cut(s) 49, 98, 478, 505, 529
MseI TTAA 5 cut(s) 222, 339, 558, 768, 825
MslI CAYNNNNRTG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 690, 782, 881
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 3 cut(s) 690, 782, 881
MwoI GCNNNNNNNGC 3 cut(s) 640, 890, 899
NdeII GATC 3 cut(s) 262, 492, 692
NheI GCTAGC 2 cut(s) 607, 626
NlaIII CATG 6 cut(s) 167, 175, 373, 383, 457, 626
NspI RCATGY 1 cut(s) 626
PaeI GCATGC 1 cut(s) 626
PaqCI CACCTGC 1 cut(s) 338
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 212, 566
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 1 cut(s) 790
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
PshAI GACNNNNGTC 1 cut(s) 921
PshBI ATTAAT 2 cut(s) 339, 558
Psp6I CCWGG 3 cut(s) 688, 780, 879
PspCI CACGTG 1 cut(s) 140
PspGI CCWGG 3 cut(s) 688, 780, 879
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 2 cut(s) 262, 692
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 5 cut(s) 222, 339, 558, 768, 825
SatI GCNGC 1 cut(s) 789
Sau3AI GATC 3 cut(s) 262, 492, 692
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 3 cut(s) 690, 782, 881
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 5 cut(s) 181, 287, 305, 823, 880
SfcI CTRYAG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 66, 221
SmoI CTYRAG 2 cut(s) 66, 221
SphI GCATGC 1 cut(s) 626
Sse9I AATT 4 cut(s) 81, 290, 676, 896
SsiI CCGC 2 cut(s) 194, 818
SspI AATATT 1 cut(s) 761
SspMI CTAG 4 cut(s) 146, 260, 608, 627
StyD4I CCNGG 3 cut(s) 688, 780, 879
TaaI ACNGT 2 cut(s) 581, 725
TaiI ACGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 520
TasI AATT 4 cut(s) 81, 290, 676, 896
TfiI GAWTC 2 cut(s) 212, 566
Tru1I TTAA 5 cut(s) 222, 339, 558, 768, 825
Tru9I TTAA 5 cut(s) 222, 339, 558, 768, 825
TscAI CASTG 4 cut(s) 97, 241, 288, 841
TseI GCWGC 1 cut(s) 788
TspDTI ATGAA 6 cut(s) 152, 358, 470, 486, 579, 674
TspRI CASTG 4 cut(s) 97, 241, 288, 841
Vha464I CTTAAG 1 cut(s) 221
VneI GTGCAC 1 cut(s) 776
VspI ATTAAT 2 cut(s) 339, 558
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 626
XspI CTAG 4 cut(s) 146, 260, 608, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.